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Vol 68, No 2 (2023)

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REVIEWS

IONIC CONDUCTIVITY AT ROOM TEMPERATURE AND THERMAL STABILITY OF CHLORINE-CONDUCTING SOLID ELECTROLYTES

Sorokin N.I.

Abstract

Search for chlorine-conducting solid electrolytes with a high ionic conductivity σ293K at room temperature (293 K) is based on the analysis of temperature measurements of the electrical conductivity σ(T) of simple and complex compounds, solid solutions, composites, and glasses. A comparison of the thermal stability of chlorides is based on the analysis of the dependences σ(T) in cyclic heating–cooling measurements and the physicochemical data. Maximum σ293 K values were found for the solid solutions (3 × 10−5 S/cm) and (1 × 10−4 S/cm). Promising directions of search for chlorine-ion solid electrolytes for chemical current sources and chlorine sensors operating at room temperature are the method of crystallochemical heterovalent substitutions and implementation of the vacancy mechanism of electrical conductivity in crystal structures of the cotunnite (PbCl2) and fluorite (CaF2) types. The parameters of the ionic conductivity of cotunnite and fluorite crystals of chlorides and fluorides are analyzed.

Kristallografiâ. 2023;68(2):171-179
pages 171-179 views

ДИФРАКЦИЯ И РАССЕЯНИЕ ИОНИЗИРУЮЩИХ ИЗЛУЧЕНИЙ

COMPARATIVE X-RAY DIFFRACTOMETRY OF THE DEFECT STRUCTURE OF ZnO EPITAXIAL FILMS DEPOSITED BY MAGNETRON SPUTTERING ON C-PLANE Al2O3 SUBSTRATES IN INHOMOGENEOUS ELECTRIC FIELD

Volkovsky Y.A., Zhernova V.A., Folomeshkin M.S., Prosekov P.A., Muslimov A.E., Butashin A.V., Ismailov A.M., Grigoriev Y.V., Pisarevsky Y.V., Kanevsky V.M.

Abstract

The results of studying the specific features of the growth of zinc oxide films formed on sapphire substrates by magnetron sputtering in an inhomogeneous electric field are presented. The films have been analyzed by high-resolution X-ray diffractometry, pole figure technique, and electron microscopy. A sequence of changes in the lateral structure with an increase in the film thickness, which depends also on the local potential, is revealed. Thus, regions with a higher surface potential correspond to the ZnOá10 0ñ(0001)||Al2O3á11 0ñ(0001) epitaxial ratio with the least lattice mismatch.

Kristallografiâ. 2023;68(2):180-188
pages 180-188 views

IN-LINE METHOD OF X-RAY PHASE-CONTRAST MICRO-CT USING A WIDE-FOCUS LABORATORY SOURCE

Krivonosov Y.S., Buzmakov A.V., Asadchikov V.E., Fyodorova A.A.

Abstract

An experimental implementation of the “in-line” method of X-ray phase contrast using a standard wide-focus X-ray tube as a polychromatic source is described. Using the proposed experimental scheme, in vitro tomographic measurements of a sample of human brain pineal gland are carried out, and the morphological structure of the soft tissues of this organ is visualized based on the results obtained. The advantage of phase-contrast tomography in comparison with traditional absorption tomography for studying the structural features of soft tissues is experimentally demonstrated. The “in-line” phase-contrast scheme, implemented on a laboratory setup, allows tomographic study of samples with linear dimensions of several millimeters and a resolution of ∼20 μm.

Kristallografiâ. 2023;68(2):189-195
pages 189-195 views

COMPUTER SIMULATION OF THE EFFECT OF COHERENT DYNAMICAL DIFFRACTION OF SYNCHROTRON RADIATION IN CRYSTALS OF ARBITRARY SHAPE AND STRUCTURE

Kohn V.G.

Abstract

A new scheme for the numerical solution of Takagi–Taupin equations, which makes it possible to simulate the effect of synchrotron radiation diffraction in crystals of arbitrary structure, is described in detail. The new scheme is convenient to perform calculations for crystals of arbitrary shape. The rectangular coordinate system and the algorithm for calculating derivatives at half of step have proven their efficiency and are used, but the recurrence equations of this algorithm have been modified towards simplification. The boundary conditions are in no way related to the crystal boundaries. A computer program is developed, and two examples are considered for the cases of diffraction in the Laue and Bragg geometries, for which the analyticl solutions are known. The calculation results are in complete agreement with these solutions.

Kristallografiâ. 2023;68(2):196-203
pages 196-203 views

EXTRACTION, PURIFICATION, AND SMALL-ANGLE X-RAY SCATTERING ANALYSIS OF THE YSXC GTPASE OF STAPHYLOCOCCUS AUREUS

Biktimirov A.D., Islamov D.R., Validov S.Z., Peter's G.S., Khaliullina A.V., Yusupov M.M., Usachev K.S.

Abstract

Study of the structures of various biological macromolecules is one of the main directions that are intensively developed using physical methods. Since proteins are an elementary unit of the structural and functional organization of a cell, the strategies for combating pathogenic microorganisms include the analysis of the bacterial protein synthesis apparatus and related systems. The extraction, purification, and small-angle X-ray scattering analysis of the structure of YsxC protein from the Staphylococcus aureus pathogenic bacterium are reported. This protein is involved in the cell growth and division processes, serves an energy-dependent factor, and participates in the assembly of large ribosome subunit. The structural study of this protein opens up a possibility of searching for small molecules capable of inhibiting its function. Since the structural variability of protein factors is higher than that of the conservative ribosome sites, their inhibition makes it possible to selectively affect a pathogenic microorganism.

Kristallografiâ. 2023;68(2):204-208
pages 204-208 views

СТРУКТУРА НЕОРГАНИЧЕСКИХ СОЕДИНЕНИЙ

STRUCTURAL COMPLEXITY OF MOLECULAR, CHAIN, AND LAYERED CRYSTAL STRUCTURES OF NATURAL AND SYNTHETIC ARSENIC SULFIDES

Banaru D.A., Aksenov S.M., Yamnova N.A., Banaru A.M.

Abstract

A ladder-wise calculation scheme has been developed for the structural complexity of heterodesmic crystal structures, with crystal interpreted as a system of contacting molecules, chains, and layers. In the last stage of ladder-wise calculation the structural complexity of the main motif is summed with the complexity of the contacts beyond the main motif in correspondence with the strong additivity rule. The application potential of the scheme is demonstrated, and the calculation results for the crystal structures of natural and synthetic arsenic sulfides are presented. The coordination of molecules and chains that is necessary for calculating the complexity of contacts beyond the main motif is determined by the method of Voronoi–Dirichlet polyhedra.

Kristallografiâ. 2023;68(2):209-222
pages 209-222 views

FILLING OF CHANNELS OF THE ZEOLITE FRAMEWORK IN TRIGONAL POLAR NONABORATE Ва3Na0.9(OH)1.9[B9O16][B(OH)3]

Topnikova A.P., Belokoneva E.L., Dimitrova O.V., Volkov A.S., Zorina L.V.

Abstract

Crystals of the new trigonal borate Ва3Na0.9(OH)1.9[B9O16][B(OH)3] (sp. gr. P31c, a =10.23684(15) Å, c = 8.72926(13) Å) were prepared by the mild hydrothermal synthesis. The filling of the channels in the framework of the polar nonaborate was found to differ from that determined previously. It is consistent with the main features of this structure type with the preservation of sassoline molecules in the channels. The structure contains an additional ОН group, which is involved in the coordination of Ва.

Kristallografiâ. 2023;68(2):223-227
pages 223-227 views

LOCAL ATOMIC ENVIRONMENT OF Zn2+ IONS IN A LOW-CONCENTRATION ZnCl2 AQUEOUS SOLUTION: XANES STUDY

Lysenko V.Y., Kremennaya M.A., Yalovega G.E.

Abstract

The diverse local environment of zinc ions in a ZnCl2 solution, depending on the symmetry, ligand type, and solution concentration, has been analyzed using the data in the literature. Experimental zinc K-edge XANES spectra in a ZnCl2 aqueous solution with a critically low concentration (10–3 М) have been theoretically analyzed. It is shown that Zn(H2O) complexes with Zn2+ ions in the octahedral coordination environment of water molecules are dominant in this solution.

Kristallografiâ. 2023;68(2):228-233
pages 228-233 views

STRUCTURE OF ORGANIC COMPOUNDS

COMPLEXES OF ETHYLENEDIAMINETETRAACETIC ACID WITH AMINES. MOLECULAR STRUCTURES OF BIS(MONOETHANOLAMINIUM) ETHYLENEDIAMINETETRAACETATE AND BIS[TRIS(HYDROXYMETHYL)METHYLAMINIUM] ETHYLENEDIAMINETETRAACETATE TRIHYDRATE

Semenov V.V., Zolotareva N.V., Novikova O.V., Petrov B.I., Lazarev N.M., Fukin G.K., Cherkasov A.V., Razov E.N.

Abstract

Tetrabasic ethylenediaminetetraacetic acid H4L binds two molecules of monobasic amines to give the corresponding salts: ethylenediaminetetraacetates of bis(monoethanolaminium) H2L2–⋅2+H3NCH2CH2ОН, tris(hydroxymethyl)methylaminium H2L2–⋅2+H3NС(CH2ОН)3⋅3H2О, diethylaminium H2L2–⋅2+H2N(C2H5)2⋅H2О, tert-butylaminium H2L2–⋅2+H3NС(CH3)3⋅5H2О, and triethanolaminium H2L2–⋅2+HN(CH2CH2ОH)3. Dibasic hexamethylene-1,6-diamine, triethylenediamine, and tetramethylethylenediamine form the following 1 : 1 adducts: H2L2–⋅
+NH3(CH2)6NH , H2L2–⋅+NH3CH2CH2(OCH2CH2)2NH , H2L2–⋅ +HN(CH2)3NH+⋅H2О, and H2L2–⋅+H(CH3)2NCH2CH2N(CH3)2H+. The molecular structures of bis(monoethanolaminium) ethylenediaminetetraacetate and bis[tris(hydroxymethyl)methylaminium] ethylenediaminetetraacetate trihydrate were determined

Kristallografiâ. 2023;68(2):234-245
pages 234-245 views

THE CRYSTAL-CHEMICAL LAWS WITHIN THE ISODIMORPHOUS SUBSTITUTION SERIES Na4[ZnxNi(1–x){N(CH2PO3)3}] ⋅ nH2O (x = 0–1)

Suksin N.E., Ul’yanov A.I., Somov N.V., Chausov F.F., Kazantseva I.S., Lomova N.V., Bel’tukov A.N., Shumilova M.A.

Abstract

Heterometallic complexes of zinc and nickel with nitrilo-tris(methylenephosphonic acid) Na4[ZnxNi {N(CH2PO3)3}] ⋅ nH2O (x = 0–1) form an isodimorphous substitution series during crystallization. The extreme zinc and nickel terms have, respectively, triclinic and monoclinic structures. The intermediate terms are crystallized in one of the following phases: either in the triclinic phase with dominance of zinc, Na4[(Zn,Ni){N(CH2PO3)3}] ⋅ 13H2O (sp. gr. P , Z = 2, a = 11.171(4)–11.2396(2) Å, b = 11.2612(5)–11.28800(10) Å, c = 12.3241(5)–12.35530(10) Å, α =108.422(4)°–108.4510(10)°, β = 97.1603(16)°–97.1790(10)°, γ = 117.0870(10)°–117.133(2)°) and trigonal-bipyramidal coordination of metal atom, or in the monoclinic phase with dominance of nickel, Na4[(Ni,Zn)(H2O){N(CH2PO3)3}] ⋅ 11H2O (sp. gr. C2/c, Z = 4, a = 11.9987(2)–12.05615(18) Å, b = 18.6231(3)–18.7073(3) Å, c = 21.0758(3)–21.1264(4) Å, β =104.3044(17)°–104.3688(16)°) and octahedral coordination of metal atom. The dependence of the bond angle, type of chemical bonding, and spectroscopic and magnetic properties on the fraction of zinc among complexing metals in the crystal, x = [Zn]/([Zn] + [Ni]), has been studied.

Kristallografiâ. 2023;68(2):246-261
pages 246-261 views

CRYSTAL AND MOLECULAR STRUCTURE OF THE ISLAND TETRANUCLEAR DIOXOMOLYBDENUM(VI) COMPLEX [MoO2(L1)]4 (H2L1 IS ACETYLACETONE ISONICOTINOYLHYDRAZONE) WITH LARGE INTRA- AND INTERMOLECULAR CHANNELS

Sergienko V.S., Abramenko V.L., Churakov A.V.

Abstract

The solvated complex [МоО2(L1)]4dimethylformamide (I) was synthesized. Its structure was
determined by X-ray diffraction analysis. The crystal structure is composed of the tetranuclear complexes [МоО2(L1)]4 (Ia) as the structural units lying on crystallographic twofold axes. Both crystallographically independent molybdenum atoms are in a distorted octahedral coordination environment formed by two cis-О(oxo) ligands, two N(L1) atoms of two molecules Ia in trans positions to the О(oxo) ligands, and two О(L1) atoms of one complex molecule in cis positions to О(oxo) and trans to each other. Each (L1)2– ligand is coordinated to two Мо atoms in a tetradentate tridentate-chelating (2О, N) bridging (N) mode. The average bond lengths in complex Iа are as follows: Мо–О(oxo), 1.701 Å; Мо–N(L1), 2.460 (b) and 2.214 Å (c); Мо–О(L1), 1.980 Å. The О(oxo)–МоО–(oxo) bond angle is 105.6°. The ordered dimethylformamide molecule is located in a narrow channel in the structure. The strongly disordered (non-located) solvent molecules (methanol/dimethylformamide/water) occupy wide channels in the structure of I.

Kristallografiâ. 2023;68(2):262-267
pages 262-267 views

STRUCTURE OF MACROMOLECULAR COMPOUNDS

STRUCTURAL BIOINFORMATICS STUDY OF THE STRUCTURAL BASIS OF SUBSTRATE SPECIFICITY OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS

Garipov I.F., Timofeev V.I., Zayats E.A., Abramchikc Y.A., Kostromina M.A., Konstantinova I.D., Esipov R.S.

Abstract

Molecular dynamics simulations were performed for wild-type purine nucleoside phosphorylase in complexes with two substrates (adenosine and guanosine). The MD simulations were also performed for the mutant form of the enzyme with the same substrates. The free energy changes upon the formation of the complexes were evaluated from the molecular dynamics trajectories by the MM-GBSA method.

Kristallografiâ. 2023;68(2):268-275
pages 268-275 views

EXTRACTION, PURIFICATION, AND CRYSTALLIZATION OF GTPASE ERA FROM STAPHYLOCOCCUS AUREUS

Klochkova E.A., Islamov D.R., Biktimirov A.D., Rogachev A.V., Validov S.Z., Bikmullin A.G., Simakin A.V., Peters G.S., Yusupov M.M., Usachev K.S.

Abstract

Protein crystal structure studies are an important tool for drug design. The growth of high-quality crystals suitable for X-ray diffraction is the limiting factor and the bottleneck in obtaining the structural data. Here we report the extraction, purification, and crystallization of the protein GTPase Era from the pathogenic bacterium Staphylococcus aureus. In bacterial cells, GTPase Era acts as a ribosome assembly factor. This enzyme is responsible for the cell growth and division. However, its structure is poorly understood. We obtained crystals of Staphylococcus aureus GTPase Era, which can be used in further structural studies by single-crystal X-ray diffraction analysis.

Kristallografiâ. 2023;68(2):276-280
pages 276-280 views

ФИЗИЧЕСКИЕ СВОЙСТВА КРИСТАЛЛОВ

LUMINESCENCE OF TWO-DIMENSIONAL ZnO NANOSTRUCTURES: NANOWALLS, NANOSHEETS, NANOCOMBS

Tarasov A.P., Zadorozhnaya L.A., Nabatov B.V., Volchkov I.S., Kanevsky V.M.

Abstract

Preliminary comparative studies of the photoluminescent properties of two-dimensional ZnO nanostructures with morphology of nanowalls, nanosheets, and nanocombs, fabricated by gas-transport synthesis, have been performed. All structures exhibited near-band-edge (NBE) UV emission of the same order of intensity. Unlike nanocombs, whose spectrum contains a comparatively strong green luminescence band, nanowalls and nanosheets are characterized by a large ratio of the UV and visible components. This distinction is presumably due to the difference in the mechanisms of structure formation: nanowalls and nanosheets are formed according to the vapor–liquid–solid mechanism, whereas nanocombs grow according to the vapor–solid mechanism

Kristallografiâ. 2023;68(2):281-284
pages 281-284 views

IONIC CONDUCTIVITY AND THERMAL STABILITY OF BiF3 CRYSTALS

Sorokin N.I., Karimov D.N.

Abstract

The temperature dependence of the ionic conductivity σdc(T) and thermal stability of BiF3 crystals with the structure of orthorhombic β-YF3 (sp. gr. Pnma, a = 6.5620(1) Å, b = 7.0144(1) Å, c = 4.8410(1) Å, V/Z = 55.71 Å3), grown from melt by the vertical directional crystallization technique have been investigated. The electrical characteristics of BiF3 are obtained from impedance measurements in the temperature range of 360−540 K. The σdc value at T = 500 K and the ion transport activation enthalpy ΔHa are found to be 2.5 × 10−5 S/cm and 0.48 ± 0.05 eV, respectively. The ΔHa value for the crystal studied is smaller by a factor of 1.4 in comparison with the isostructural rare-earth (Tb, Ho, Er, Y) trifluorides, which is due to the high electronic polarizability and large ionic radius of Bi3+ cations. It was found that BiF3 crystals are thermally stable at temperatures up to 550−600 K; at higher temperatures degradation was observed due to the sublimation and pyrohydrolysis of this material. The formation of oxofluoride phases is responsible for the detected conductivity jump in the dependence σdc(T) at T ∼ 600 K.

Kristallografiâ. 2023;68(2):285-289
pages 285-289 views

ПОВЕРХНОСТЬ, ТОНКИЕ ПЛЕНКИ

STRUCTURAL AND PHASE TRANSFORMATIONS ON THE SURFACE OF SUPERPROTONIC CRYSTALS OF ACID SALTS OF POTASSIUM-AMMONIUM SULFATE

Gainutdinov R.V., Tolstikhina A.L., Selezneva E.V., Makarova I.P., Vasiliev A.L.

Abstract

The results of comprehensive studies of structural and phase transformations in
(K0.43(NH4)0.57)3H(SO4)2 superprotonic crystals under the influence of atmospheric moisture are presented. The real structure, composition, and thickness of the modified surface layers have been analyzed using scanning electron microscopy and X-ray microscopy. The local characteristics of nanostructures, formed on the freshly cleaved (001) crystal surface subjected to the electrostatic effect, have been investigated by conductive atomic force microscopy. A correlation has been established between the time changes in the structure, composition, and magnitude of the electrostatic potential of the crystal surface. The results are considered in the context of evaluation of the chemical stability of the samples and searching for the ways to optimize the compositions and functional properties of superprotonic compounds.

Kristallografiâ. 2023;68(2):290-297
pages 290-297 views

НАНОМАТЕРИАЛЫ, КЕРАМИКА

HIGH-CAPACITY CALCIUM CARBONATE PARTICLES AS PH-SENSITIVE CONTAINERS FOR DOXORUBICIN

Pallaeva T.N., Mikheev A.V., Khmelenin D.N., Eurov D.A., Kurdyukov D.A., Popova V.K., Dmitrienko E.V., Trushina D.B.

Abstract

Nanostructured submicron calcium carbonate particles with sizes of 500 ± 90 and 172 ± 75 nm have been synthesized by mass crystallization in aqueous solutions with addition of glycerol, as well as a mixture of polyethylene glycol, polysorbate, and a cellular medium. CaCO3 : Si : Fe nanoparticles 65 ± 15 nm in size have been obtained by template synthesis in pores of silica particles. The crystal structure and polymorphism of these particles are studied, and the influence of the size and structure of particles on the efficiency of their loading with a chemotherapy agent , as well as its release under model conditions at different рН, is determined.

Kristallografiâ. 2023;68(2):298-305
pages 298-305 views

COMPOSITION MATERIALS IN THE CaF2–BaF2 SYSTEM

Buchinskaya I.I., Teplyakova T.O., Sorokin N.I., Karimov D.N.

Abstract

Composite nanomaterials (1 – x)CaF2–xBaF2 with 0.4 ≤ х ≤ 0.6 have been prepared by directional melt crystallization in a fluorinating atmosphere. The structural, optical, mechanical, and electrical characteristics of the synthesized nanocomposites are studied. Biphasic (1 – x)CaF2–xBaF2 composites have a lamellar fine microstructure. The lamella thickness decreases with an increase in the BaF2 content and reaches 30–50 nm for the composition with x = 0.5. The composites retain high transparency in the IR range (close to the values for the initial components). The microhardness (НV ≈ 5.0 GPa) and ionic conductivity (σdc = (1–3) × 103  S/cm at 823 K) of these composites exceed significantly the corresponding parameters of CaF2 and BaF2 crystals. The fluoride nanocomposites under investigation are promising materials for practical applications in photonics and solid-state ionics.

Kristallografiâ. 2023;68(2):306-312
pages 306-312 views

GALLIUM NANOPARTICLES OBTAINED ON SILICON SUBSTRATES BY THERMAL EVAPORATION METHOD

Kozhemyakin G.N., Belov Y.S., Trufanova M.K., Artemov V.V., Volchkov I.S.

Abstract

Gallium nanostructures have been obtained on silicon substrates by thermal evaporation in an argon atmosphere. The sizes, density, and shape of Ga particles have been determined by computer processing of electron SEM-images. The condensation of Ga on Si substrates for 10, 15, and 20 s ensured the formation of particles of several types: spherical, triangular, square, and in the form of rods and polyhedrons. The increase in the Ga condensation time to 20 s led to the increase in the density of spherical nanoparticles by 41%.

Kristallografiâ. 2023;68(2):313-318
pages 313-318 views

CRYSTAL GROWTH

ATOMIC FORCE MICROSCOPY AND THE BUILDING PARTICLE IN THE FLUCTUATION THEORY OF CRYSTAL GROWTH

Rakin V.I.

Abstract

The specific features of application of a low-energy atomic-force microscope (AFM) for studying the dynamic process of face growth in terms of the fluctuation model of crystal growth are discussed. It is shown that the probe interaction with an area of growing crystal surface on the time scale characteristic of a sequence of free energy fluctuations is a limiting factor for constructing an image of growing face surface.Agreement between the phenomenological and quantum (according to the uncertainty relation) descriptions of the effect of limiting magnification for a growing crystal face in an AGM is demonstrated. Specific features of detecting a growth stage on a crystal face using a transmission/scanning high-resolution electron microscope in a gas medium are also discussed. The effect of ultimate magnification when observing crystal growth in an АСМ is a basis for discussing the concept of the transient state of matter in the topochemical reaction of crystal growth and the phenomenon of building particle.

Kristallografiâ. 2023;68(2):319-327
pages 319-327 views

THE VARIANCE AND THERMODYNAMIC EQUILIBRIUM OF THE FACE SYSTEM OF CRYSTAL

Admakin L.A., Admakin A.L.

Abstract

The thermodynamic elements of a face system of crystal are reticular faces, divided into two uniform groups: basic faces (which are systematic in a face system) and supplementary faces (which shorten and disappear during crystal growth). The existing methods for estimating the equilibrium of a face system and crystal faces are analyzed. It is shown that the Gibbs equilibrium condition is not satisfied for a face system consisting of basic and supplementary faces; it is valid for only a basic crystal. The functions of intensive parameters of a face system are free coordination bonds and temperature. Pressure does not affect the formation of reticular faces. The chemical potentials of the crystal components are invariant. The extensive parameters are the areas of reticular faces and entropy. The variance function of a face system is derived.
An extended form of the Gibbs condition is obtained by expanding the internal intensive parameters in isolated groups of faces, and it is shown that the basic faces, being invariant, d not affect the crystal equilibrium. An equilibrium of a face system is determined by supplementary faces. An example of calculating the variance of two shapes of zircon crystals is presented.

Kristallografiâ. 2023;68(2):328-336
pages 328-336 views

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