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Volume 42, Nº 4 (2016)

Article

Antimicrobial peptides of invertebrates. Part 2. biological functions and mechanisms of action

Balandin S., Ovchinnikova T.

Resumo

Antimicrobial peptides (AMPs) of invertebrates are characterized by a wide variety of mechanisms of their action that involve not only disruption of the barrier function of a membrane of a target cell, but specific inhibition of metabolism processes via ligand-receptor interactions with specific molecules on the surface or within the cell as well. Endogenous AMPs can play a role of mediators of the immune system (immunomodulators) by activation of phagocytosis and chemotaxis, and by stimulation of production of cytokines. The second part of the review focuses on biological functions and mechanisms of action of AMPs of invertebrates. A problem of biological significance of antimicrobial properties in vitro is reviewed. The main mechanisms of the AMP action on a membrane (models of the barrel-stave channel and the toroidal pore and the “carpet” mechanism) are described, and the problems of selectivity of interaction with a microbial membrane are analyzed. The data on alternative mechanisms of the antimicrobial action, such as inhibition of transcription and translation, sequestration of metal ions, and inhibition of biosynthesis of bacterial and fungal cell walls, are presented. A number of examples demonstrate the AMP regulatory activities of invertebrates.

Russian Journal of Bioorganic Chemistry. 2016;42(4):343-360
pages 343-360 views

Penetration of the peptide lactaptin into human cancer cells

Chinak O., Fomin A., Nushtaeva A., Koval O., Savelyeva A., Kuligina E., Richter V.

Resumo

Lactaptin, a human milk protein with a molecular weight of 8.6 kDa, is a fragment of human ?casein, which has cytotoxic activity toward mammalian cancer cells in vitro. RL2 is a recombinant analogue of lactaptin, which induces the apoptosis of human cancer cells in culture and suppresses the tumor growth in vivo. It has been shown earlier that RL2 penetrates into both human cancer and nonmalignized cells and binds to cytoskeletal structures. In this process, it induces the apoptosis of cancer cells and does not diminish the viability of normal cells. The mechanism of the penetration of RL2 into human cancer cells has been studied by flow cytometry and fluorescence microscopy using the inhibitors of different endocytosis pathways. It has been shown that RL2 penetrates into cells partly through lipid raft-mediated dynamin-independent pinocytosis and partly through direct penetration across the plasma cell membrane. An analysis of the primary structure of RL2 and the mechanism of its penetration into the cell suggests that it can be assigned to the class of cell-penetrating peptides.

Russian Journal of Bioorganic Chemistry. 2016;42(4):361-371
pages 361-371 views

The arsenolysis reaction in the biotechnological method of synthesis of modified purine β-D-arabinonucleosides

Konstantinova I., Fateev I., Miroshnikov A.

Resumo

We found a unique property of E. coli purine nucleoside phosphorylases to selectively perform the arsenolysis reaction of ribonucleosides in their active site without affecting β-D-arabinonucleosides. In the synthesis of modified β-D-arabinonucleosides from the corresponding ribonucleosides, the catalytical amount of sodium arsenate in the transglycosylation reaction provided a 95 to 98% conversion rate. Such an approach was shown to simplify the composition of the reaction mixtures and facilitate the isolation of the target nucleosides, particularly, vidarabine, fludarabine, and nelarabine.

Russian Journal of Bioorganic Chemistry. 2016;42(4):372-380
pages 372-380 views

Influence of the (1–106) fragment of Escherichia coli Lon protease on the enzyme function and DNA binding

Kudzhaev A., Dubovtseva E., Serova O., Andrianova A., Rotanova T.

Resumo

Bifunctional Escherichia coli LonA protease (Ec-Lon) belongs to the superfamily of AAA+ proteins. It is a key member of the quality control system of the cell proteome. The enzyme degrades abnormal and defective polypeptides, as well as a number of regulatory proteins, by the processive mechanism. In addition to the ATPase module and the proteolytic domain, Ec-Lon subunit includes a two-domain N-terminal noncatalytic region. A comparative study of the enzyme properties and the DNA-binding ability of full-size Ec-Lon and its form with a deletion of 106 amino acid residues at the N-end has been carried out to reveal the role of the missing fragment in the Ec-Lon function. It has been shown that the fragment does not affect the enzyme peptidase site function or the hydrolysis of the protein substrate by the processive mechanism. However, it is essential for the manifestation of proper ATPase activity and for the implementation of the conformational rearrangements in the ATPase domain, stemming from the coordination of different nucleotides or their complexes by magnesium ions. The loss of the (1–106) fragment destabilizes the active Ec-Lon structure and results in intense Ec-Lon autolysis.

Russian Journal of Bioorganic Chemistry. 2016;42(4):381-388
pages 381-388 views

Effect of lipoic acid on the activity of caspases and the characteristics of the immune and antioxidant statuses in rats with rheumatoid arthritis

Kryl’skiy E., Popova T., Kirilova E., Safonova O.

Resumo

The activity of caspase-3, caspase-8, superoxide dismutase, and catalase and the content of circulating immune complexes and immunoglobulins A, M, and G in the blood serum and muscles of rats in the norm, in experimental rheumatoid arthritis, and by the action of lipoic acid against the background of progressive pathology have been studied. The induction of rheumatoid arthritis in rats was accompanied by an increase in marker parameters and immune status indices, as well as in the activity of caspase-3, caspase-8, superoxide dismutase, and catalase, which was probably caused by excessive generation of reactive oxygen species during the development of pathology. The administration of lipoic acid to rats with rheumatoid arthritis led to a normalization of the parameters, which was evidently due to the capacity of the compound to produce the antioxidant effect and reduce the severity of autoimmune diseases.

Russian Journal of Bioorganic Chemistry. 2016;42(4):389-396
pages 389-396 views

The derivatives of imidazo[1,2-a]benzimidazole as 5-HT2A receptor antagonists

Spasov A., Yakovlev D., Maltsev D., Zhukovskaya O., Anisimova V., Kovalev G., Zimin I., Morkovina Y.

Resumo

We studied in vitro the 5-HT2A antagonistic activity of 16 imidazo[1,2-a]benzimidazole derivatives. Using the radioligand method we showed the binding of 9-(2-diethylaminoethyl)-2-(4-methoxyphenyl)imidazo[1,2-a]benzimidazol dinitrate to the 2A subtype serotonin receptor.

Russian Journal of Bioorganic Chemistry. 2016;42(4):397-403
pages 397-403 views

Synthesis and properties of diadamantyl-containing symmetric diureas as target-oriented inhibitors of human soluble epoxide hydrolase

Burmistrov V., Butov G., Karlov D., Palyulin V., Zefirov N., Morisseau C., Hammock B.

Resumo

A series of target-oriented competitive inhibitors of human soluble epoxide hydrolase have been synthesized. The compounds retain the inhibitory properties at concentrations down to 4 nM. Based on the results of molecular modeling, it has been shown that the high inhibitory activity of this series of compounds is achieved by a unique mode of the binding to the active site of the enzyme.

Russian Journal of Bioorganic Chemistry. 2016;42(4):404-414
pages 404-414 views

Novel hydroxylamine-containing analogues of 1-guanidino-7-aminoheptane (GC7), an effective inhibitor of deoxyhypusine synthase

Khomutov M., Simonian A., Weisell J., Vepsalainen J., Kochetkov S., Khomutov A.

Resumo

Earlier unknown hydroxylamine-containing analogues of 1-guanidino-7-aminohepane (GC7) containing the free aminooxy group (1-aminooxy-6-guanidinohexane), bis-guanyl derivatives of 1-aminooxy-6-aminohexane, and 1-aminooxy-5-aminopentane, and mono-guanidinooxy analogue (1-guanidinooxy-6-aminohexane) were synthesized in high overall yields from commercially available 5-(Boc-amino)1-pentanol and 6-(Boc-amino)-1-hexanol. It was demonstrated that 1,3-di-Boc-2-(trifluoromethylsulfonyl)guanidine is able to specifically amidinate the amino group in the presence of the free aminooxy group. The application of newly synthesized GC7 analogues for the investigation of the peculiarities of their interaction with the active site of deoxyhypusine synthase was discussed.

Russian Journal of Bioorganic Chemistry. 2016;42(4):415-422
pages 415-422 views

Synthesis of 2,11-bis(methylidene)spermine, a new inhibitor of spermine oxidase

Grigorenko N., Khomutov M., Simonian A., Kochetkov S., Khomutov A.

Resumo

Earlier unknown 1,12-diamino-2,11-bis(methylidene)-4,9-diazadodecane, which may be considered as an enzyme-activated inhibitor of spermine oxidase, was synthesized in 6 steps starting from 2-chloromethyl-3-chloropropene-1 in a high yield. Application of newly synthesized spermine analogue for the inhibition of spermine oxidase was discussed.

Russian Journal of Bioorganic Chemistry. 2016;42(4):423-427
pages 423-427 views

Antimicrobial activities of some novel thiazoles

Al-Mousawi S., Moustafa M., Al-Saleh E.

Resumo

2-(4-Phenylthiazol-2(3H)-ylidene)-malononitrile was synthesized by treating 1-phenyl-2-thiocyanatoethanone with malononitrile. Reaction of 2-(4-phenylthiazol-2(3H)-ylidene)-malononitrile with hydrazine hydrate afforded 4-(4-phenylthiazol-2-yl)-1H-pyrazole-3,5-diamine, reaction with benzylidenemalononitrile yielded 2-(5-benzylidene-4-phenyl-5H-thiazol-2-ylidene)-malononitrile, and coupling with benzenediazonium chloride gave 2-(4-phenyl-5-phenylazo-3H-thiazol-2-ylidene)-malononitrile. Diaminopyrazole reacted with enaminonitrile to yield the 3-(4-phenylthiazol-2-yl)pyrazolo[1,5-a]pyrimidine-2,7-diamine. All synthesized compounds showed significant antimicrobial activities with MIC range of 5–750 µg/mL. The results demonstrated a correlation of the hydrophobicity of the compounds with their antimicrobial activity. The most potent antimicrobial compound was 2-(4-phenylthiazol-2(3H)-ylidene)-malononitrile.

Russian Journal of Bioorganic Chemistry. 2016;42(4):428-433
pages 428-433 views

Design, synthesis, and anticancer evaluation of some novel thiourea, carbamimidothioic acid, oxazole, oxazolidine, and 2-amino-1-phenylpropyl-2-chloroacetate derived from L-norephedrine

Abdel-Kader M., Ghorab M., Alsaid M., Alqasoumi S.

Resumo

A novel series of thiourea, carbamimidothioic acid, 4, 5-dihydrooxazole-2-thiol, oxazolidine-2thine, and 2-amino-1-phenylpropyl-2-chloroacetate derivatives was designed and synthesized using 2-amino-1-phenylpropan-1-ol (L-norephedrine) as a strategic starting material. The structures of the newly synthesized compounds were established by elemental analyses, IR, and 1H NMR and 13C NMR spectral data. The compounds were evaluated for their in vitro anticancer activity against various cancer cell lines. The corresponding acetamide, carbamimidothioic acid, and 2-2-amino-1-phenylpropyl-2-chloroacetate derivatives showed almost the same activity as the standard drug doxorubicin against human breast cancer cell line (MCF-7). Also, the acetamide and 2-thioxoimidazolidin-4-one derivatives exhibited higher activity than the reference drug doxorubicin against human colon cancer cell line (HCT 116).

Russian Journal of Bioorganic Chemistry. 2016;42(4):434-440
pages 434-440 views

Novel 3-pyridinecarbonitriles incorporating sulfonamide moieties as anti-breast cancer agents

Ghorab M., Alsaid M.

Resumo

A novel series of 3-pyridinecarbonitrile derivatives incorporating sulfonamide moieties and sulfonyl derivatives was synthesized using 2-chloro-6-methylnicotinonitrile as a strategic starting material. The structures of the synthesized compounds were elucidated on the basis of elemental analysis, IR, 1H NMR, 13C NMR, and mass spectral data. All the prepared compounds were evaluated for their in vitro anticancer activity against breast cancer cell line (MCF-7). Most of the compounds showed good to moderate activity, higher than that of the reference drug doxorubicin. Two compounds showed the same activity as doxorubicin, while three compounds exhibited remarkable activity.

Russian Journal of Bioorganic Chemistry. 2016;42(4):441-448
pages 441-448 views

Genetic link between IRR-receptor and Ly6/PLAUR protein

Shayahmetova D., Zhevlenev E., Mozhaev A., Deyev I., Petrenko A.

Resumo

Receptor tyrosine kinase IRR is a pH-sensor that able to be activated by alkaline extracellular media. IRR is a close homologue of the insulin receptor and insulin-like growth factor receptor but no endogenous ligands of a peptide or protein nature have been found for IRR. IRR expression was detected in certain populations of kidney cells, stomach, pancreas and also in parts of the sympathetic and cholinergic neurons. We have previously identified behavioral disorders in mice lacking IRR. In this study we performed a comparative analysis of wild-type mice brain transcriptomes and IRR-knockout mice brain transcriptomes using method of deep sequencing. The most significant difference (two-fold increase in expression) was observed for Ly6/PLAUR protein transcript. It is known that this protein is able to stimulate nicotinic acetylcholine receptor desensibilization. These results suggest that behavioral characteristics of mice lacking IRR are caused by the functional link between IRR and Ly6/PLAUR in cholinergic neurons of the brain.

Russian Journal of Bioorganic Chemistry. 2016;42(4):449-452
pages 449-452 views

Conformationally locked GFP chromophore derivatives as potential fluorescent sensors

Baleeva N., Yampolsky I., Baranov M.

Resumo

We propose to use the conformationally locked GFP chromophore derivatives (4-(2(difluoroboryl)benzylidene)-1H-imidazol-5(4H)-ones) as potential fluorescent sensors. The model carbamate derivatives were synthesized and their fluorescent properties were studied. It was shown that the introduction/cleavage of the carbamate groups at the nitrogen atom led to the noticeable shifts in the absorption and emission maxima of the resultant derivatives, which makes them promising candidates for new fluorescent sensors.

Russian Journal of Bioorganic Chemistry. 2016;42(4):453-456
pages 453-456 views

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