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Vol 59, No 10 (2023)

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ОБЗОРНЫЕ И ТЕОРЕТИЧЕСКИЕ СТАТЬИ

Immunogenetic Factors in the Pathogenesis of Schizophrenia

Plotnikova M.Y., Kunizheva S.S., Rozhdestvenskikh E.V., Andreeva T.V.

Abstract

Human predisposition to neurological diseases such as schizophrenia, Alzheimer’s, Parkinson’s and other neuropathologies is associated with genetic and environmental factors. One of the promising directions in the area of molecular neurosciences is the study of the role of immunogenetic mechanisms in different types of pathological processes in brain. This review explores the role of complex histocompatibility genes in the pathogenesis of schizophrenia, evaluating changes in the immune repertoire of T- and B-cell receptors in neuroinflammation.

Genetika. 2023;59(10):1103-1111
pages 1103-1111 views

The Genetic Resource of Thinopyrum elongatum (Host) D.R. Dewey in Breeding Improvement of Wheat

Korostyleva T.V., Shiyan A.N., Odintsova T.I.

Abstract

Thinopyrum elongatum (Host) D.R. Dewey is a valuable resource for the application of genomic engineering and modern genetic technologies aimed at wheat improvement because it carries genome Е, the parent genome of the Thinopyrum genus. Its representatives are successfully used in distant hybridization and production of introgressive lines for transferring genes of economically valuable traits into new wheat varieties. This review presents the available data on the main genetically characterized traits of Th. elongatum that have been or can be used for transfer into the wheat genome. These traits include resistance to fusariosis, septoriosis, rust diseases, and abiotic environmental factors – overwatering, soil salinity and low temperatures, as well as the traits that determine the quality of bakery products. The latest studies of Th. elongatum genome by genome and transcriptome sequencing are also considered.

Genetika. 2023;59(10):1112-1119
pages 1112-1119 views

Genetic Factors of Reflex Epilepsies

Dudko N.A., Kunizheva S.S., Andreeva T.V., Adrianova I.Y., Rogaev E.I.

Abstract

Reflex epilepsy is a relatively rare form of epilepsy, occurring only in five percent of all cases of this disease. The genetic factors of reflex epilepsy are diverse and, in general, poorly studied. This review examines the main results obtained in recent years in the study of molecular genetic factors of reflex epilepsy, including new data on the mechanisms of genetic regulation in reflex epilepsy caused by triggers such as audio and video stimulation, food consumption, reading, contact with water and hypoxia. The results obtained in studies on animal models and patients using next-generation sequencing technology are presented.

Genetika. 2023;59(10):1120-1133
pages 1120-1133 views

ГЕНЕТИКА РАСТЕНИЙ

Molecular Marking in Brassica oleracea L. Breeding for Resistance to Fusarium Wilt

Dubina E.V., Makukha Y.A., Artem’eva A.M., Fateev D.A., Garkusha S.V., Gorun O.L., Lesnyak S.A.

Abstract

This article presents the results of research on the identification of informative DNA marker systems, providing reliable control of the resistance gene to fusarium wilt Foc1 presence in white cabbage breeding material. At the beginning of the work 14 molecular markers, taken from VegMarks database and literature sources were tested on isogenic white cabbage lines with contrasting resistance to fusarium wilt (resistant line DT-46 and susceptible line Kb1P). InDel-marker M10 and SSR-markers Frg13 and O110-D01 have been ascertained to show polymorphism between white cabbage forms with contrasting resistance to fusarium wilt. Also PCR-analysis of segregating F2-population plants of hybrid combination DT-46 × Kb1P using these markers and phytopathology testing have been conducted. As a result of statistical analysis of segregation it has been found that SSR-marker Ol10-D01 only is cosegregated with the trait of resistance to fusarium wilt as expected segregation of F2-plants by genotype 1 : 2 : 1 according to Mendel’s law, the least recombination frequency between the resistance gene Foc1 and the marker (1.6%) has just been observed by this locus only and highly polymorphic (PIC = 0.51).

Genetika. 2023;59(10):1134-1141
pages 1134-1141 views

ГЕНЕТИКА ЖИВОТНЫХ

Phylogeny of the Genus Eleginus (Gadidae) according to the Analysis of the Variability of Microsatellite Locus and mtDNA CO1 Fragment

Stroganov A.N., Ponomareva E.V., Ponomareva M.V., Shubina E.A., Zhukova K.A., Smirnov .A., Rakitskaya T.A., Rakitina M.V.

Abstract

Genetic methods based on the study of the variability of mitochondrial (CO1) and nuclear (microsatellites) DNA were used to study the processes of morphogenesis in the genus Eleginus. The revealed level of genetic differentiation characterizes the Pacific Saffron cod (Eleginus gracilis) and Navaga (Eleginus nawaga) as independent species that diverged in a relatively recent period at the boundary of the Pliocene and Pleistocene. The White Sea Navaga’s populations were by microsatellites markers differed from the Navaga inhabiting the basins of the Kara and the Barents seas. At the same time, it is assumed that the Kara-Barents Sea region could act as a “glacial refugium”, which ensured the post-glacial settlement of Navaga, including in the “watered” White Sea depression. Phylogenetic analysis based on CO1 haplotypes diversity reveals demand of possible reorganization in order Gadiformes, including Eleginus in an independent subfamily – sister in relation to the subfamilies Gadinae, Lotinae, Merlucciinae. The prospects of improving genetic methodological approaches in the framework of the development of research on Saffron cod are noted.

Genetika. 2023;59(10):1142-1153
pages 1142-1153 views

DNA Identification of Parasitic Copepods Salmincola (Copepoda, Siphonostomatoida, Lernaeopodidae): Variability and Rate of Evolution of the Mitochondrial Cytochrome c Oxidase Subunit I Gene

Shedko S.V., Shedko M.B., Miroshnichenko I.L., Nemkova G.A.

Abstract

The barcode fragment of the COI gene was sequenced in 91 specimens of five species of parasitic Salmincola copepods, sampled from salmonids mainly from the Russian Far East: S. californiensis (mykiss and masu salmon) and S. edwardsii (various species of chars, sockeye salmon from Lake Kronotskoe), S. carpionis (various species of chars), S. markewitschi (whitespotted char), S. stellata (Sakhalin taimen). A total of 41 haplotypes were found with a maximum level of differences of 0.183 nucleotide substitutions per position. The distance between species varied from 0.139 ± 0.014 in the S. markewitschiS. carpionis pair to 0.179 ± 0.015 in the S. stellataS. californiensis pair. The intraspecific nucleotide diversity of the COI gene fragment is much lower: for S. californiensis and S. edwardsii, inhabiting the gill cavity and fins of the host – 0.013 ± 0.003 and 0.015 ± 0.003, and for S. stellata, S. markewitschi, and S. carpionis, localized in the buccal cavity of the hosts – 0.002 ± 0.001, 0.004 ± 0.001, and 0.005 ± 0.001, respectively. A comparison of samples of three Salmincola copepod species from different regions of the Russian Far East revealed a significant (Fst = 0.28–0.42, P \( \ll \) 0.001) genetic subdivision. Three subclades of edwardsii-like copepods – S. edwardsii from the Russian Far East, S. edwardsii from the American brook char of eastern North America, and S. siscowet from the lake char of Michigan (COI sequences of copepods from the last two groups are taken from genetic databases) – differed from each other by an average of 9.3–10.9% nucleotide positions, which means the need for a taxonomic revision of S. edwardsii. According to the molecular dating carried out, the divergence of Salmincola lineages started in the Miocene and ended in the early Pliocene. The phylogenetic substitution rate was 0.0228 (95% interval: 0.0132–0.033) nucleotide substitutions/position/million years/lineage. The rate of nucleotide substitutions at the population level is 3.7 times higher – 0.0849 (0.0212–0.170). The high level of variability of the COI gene fragment makes this marker a useful tool both for developing the taxonomy and phylogeny of Salmincola and Lernaeopodidae copepods at the species and genus levels, and for analyzing the differentiation of their populations.

Genetika. 2023;59(10):1154-1164
pages 1154-1164 views

ГЕНЕТИКА ЧЕЛОВЕКА

Study of the Association of Polymorphic Variants rs2295080 and rs1883965 of the MTOR Gene with the Development of Pulmonary Sarcoidosis

Malysheva I.E., Topchieva L.V., Tikhonovich E.L.

Abstract

The aim of the study was to study the association of polymorphic variants rs2295080 and rs1883965 of the MTOR gene with the risk of developing pulmonary sarcoidosis. The study included 253 people (122 patients diagnosed with morphologically verified sarcoidosis with lung involvement (average age – 41.00 ± 12.56 years) and 131 healthy people (control group) (average age – 44.00 ± 14.23). The distribution of alleles and genotypes of polymorphic markers rs2295080 and rs1883965 of the MTOR gene was analyzed in the study groups. There was a statistically significant increase in the level of mRNA expression of the MTOR gene in PBL of patients with pulmonary sarcoidosis compared with the control group (p = 0.007). A decrease in the number of transcripts of this gene was noted in patients receiving therapy compared with patients without therapy (p = = 0.025). There were no statistically significant differences in the distribution of allele and genotype frequencies for polymorphic markers rs2295080 and rs1883965 of the MTOR gene in the group of patients with pulmonary sarcoidosis and in the control group: (χ2 = 0.196, d.f. = 1, p = 0.658 and χ2 = 0.637, d.f. = 2, p = = 0.728) and (χ2 = 0.034, d.f. = 1, p = 0.855 and χ2 = 0.051, d.f. = 2, p = 0.975) respectively. Conclusion: аn increased level of expression of the MTOR gene in peripheral blood leukocytes of patients with pulmonary sarcoidosis may indicate the involvement of this gene in the pathogenesis of this disease. Polymorphic markers rs2295080 and rs1883965 of the MTOR gene are not associated with the risk of developing pulmonary sarcoidosis. Probably, an increase in the expression level of the MTOR gene in patients with pulmonary sarcoidosis is due to the development of inflammation.

Genetika. 2023;59(10):1165-1170
pages 1165-1170 views

Effect of Chronic Radiation Exposure on Human microRNA Expression

Yanishevskaya M.A., Blinova E.A., Akleyev A.V.

Abstract

Relative expression of mature microRNA assessed in peripheral blood cells in persons chronically exposed to low-dose radiation in the long-term period. The study included people exposed in the 1950s on the Techa River (Southern Urals, Russia). The cumulative red bone marrow doses (RBM) of the persons in the main study group (33 persons) ranged from 77.7 to 2869.8 mGy (mean value – 698.5 mGy). The comparison group consisted of 30 people with RBM dose not exceeding 70 mGy over their lifetime. Reverse transcription of RNA samples was performed using specific stem-loop primers (“stem-loop”). Changes in the relative content of microRNA were assessed by real-time PCR on the CFX96 detection system (BioRad, USA). Statistical analysis of the results was performed using Mann–Whitney U-criterion. A significant increase in hsa-miR-125b, hsa-miR-181a, and hsa-miR-16-5p content was detected in exposed people after 60 years, and their expression was found to depend on the RBM dose.

Genetika. 2023;59(10):1171-1178
pages 1171-1178 views

Genome-Wide Association Study: Analysis of Association of Polymorphic Loci in 4p15.2 and 20q13.31 Regions with Paranoid Schizophrenia

Gareeva A.E.

Abstract

Over fifteen years, genome-wide association studies (GWAS) have identified several million polymorphic risk markers for schizophrenia, significantly advancing our understanding of the genetic architecture of schizophrenia. The aim of this study was to study genetic risk factors for the development of schizophrenia in a genome-wide association analysis in Russians, Tatars, and Bashkirs from the Republic of Bashkortostan. The studied sample consisted of 816 patients with paranoid schizophrenia and 989 healthy individuals. GWAS genotyping of DNA samples was carried out on the PsychChip, which included 610 000 single nucleotide polymorphic variants (SNPs). As a result of the study, for the first time, an association of SNPs rs73254185 (4p15.2) and rs587778384 of the GNAS gene (20q13.31) with the risk of paranoid schizophrenia in individuals of different ethnicity, Russians, Tatars and Bashkirs living in the Republic of Bashkortostan, was established, which probably may indicate involvement of PI4K2B and GNAS genes localized in these chromosomal regions in the pathogenesis of schizophrenia.

Genetika. 2023;59(10):1179-1190
pages 1179-1190 views

Polymorphism of the MAOA Gene (rs1137070) and Internet Addiction in Adolescents

Kopylova K.V., Marchenko I.V., Shubina M.V., Gorbacheva N.N., Novitckii I.A., Smolnikova M.V.

Abstract

Monoamine oxidase A (MAOA) catalyzes the degradation of norepinephrine, dopamine, and serotonin, i.e. neurotransmitters involved in the pathogenesis of pathological addictions, including internet addiction (IA). Gene MAOA has been actively studied in terms of genetic predisposition to the development of aggressive behavior potentially involved in the formation of IA. The study included 602 adolescents (9–18 years old, mean age = 14.6, SD 1.7) from the Angara-Yenisei macroregion (Russians n = 329, Tuvans n = 158, Khakasses n = 158). The type of IA was assessed according to the Chen scale (Chen Internet Addiction Scale, CIAS), gene polymorphism was detected using real-time PCR. The distribution of the TT genotype of MAOA rs1137070 polymorphism associated with low activity of the monoamine oxidase A enzyme and aggressive behavior affected by IA, was found to be significantly higher in Tuvan adolescents compared with Russians (31.1/21.2% p = = 0.02). Pathological internet addiction (more than 65 points by Chen scale) often observed among Khakass adolescents compared to Russian (26.4/15.5%, p = 0.03). Thus, the allelic variant T of MAOA rs1137070 polymorphism appears to be potential marker for dependent and aggressive behavior to form, Asian representatives being more susceptible to the development of pathological addictions than Caucasian populations.

Genetika. 2023;59(10):1191-1198
pages 1191-1198 views

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