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卷 69, 编号 1 (2024)

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Molecular biophysics

Chlorophyllin Inhibits Lipid Peroxidation Triggered by the Fenton Reaction

Romodin L.

摘要

The Fenton reaction was used to model a system in which particles similar to those formed during water radiolysis are created. A method of registering the chemiluminescence was applied to the analysis of the chlorophyllin-induced suppression of reactions caused by hydroxyl radicals. It has been shown that sodium copper chlorophyllin dose-dependently inhibits the chemiluminescence which accompanies the Fenton-mediated oxidation of phosphatidic acid. This leads us to conclude that copper chlorophyllin can inhibit the metabolism of lipid radiotoxins, also known as lipid peroxidation, caused by the attack of water radiolysis products to lipid molecules.
Biofizika. 2024;69(1):5-9
pages 5-9 views

Secondary Metabolites and Amino Acids in the Neocortex of the Long-Tailed Ground Squirrel Urocitellus undulatus at Different Stages of Hibernation

Karanova M., Zakharovа N.

摘要

This study is a continuation of our previous research aimed at investigating changes in the pools of amino acids in the myocardium of the ground squirrel during winter torpor. Neurochemical profiles of amino acids and the secondary metabolites (taurine, phosphoserine, and cysteic acid) were explored in the neocortex of the ground squirrel at different stages of torpor: in the beginning of torpor (2–3 days) and during prolonged torpor (9–10 days), as well as during short-term winter arousal (winter activity, euthermia). Reduced excitatory neurotransmitter levels (glutamate by 7% and 14%; aspartate by 25% and 52% in a coordinated manner and the increased level of GABA, the main transmission inhibitor (by 50% and 67%) were observed from the onset of the torpor entry and at the end of the torpor arousal, respectively. Alanine, which was formed in negligible amounts in the neocortex in the summer season, increased at the initial stage of hibernation and after multiday torpor bout (by 98% and 126%, respectively), indicating a partial switch to anaerobic glycolysis. Short-term inter-bout euthermia returned levels of these substances back to normal. The behavior of glutamate and aspartate, the anaplerotic substrates, that supported cycling of the tricarboxylic acid cycle during torpor and winter activity periods was like their responses in the myocardium, though differed quantitatively. The responses of the neuromodulators such as glycine, threonine, and lysine differed radically when compared to their responses in the myocardium. No changes in taurine and phosphoserine pools were detected, but the level of cysteic acid decreased compared to the summer control from 0.51 ± 0.06 μmol/g to 0.07 ± 0.01 μmol/g at the end of torpor, while during winter euthermia it became 2 times lower than the summer level. Our data suggest that metabolic pathways, involving anaplerotic amino acids of the neocortex, are more active than the myocardium during winter torpor, while the pools of neuromodulators that regulate inhibition processes, increase.
Biofizika. 2024;69(1):10-23
pages 10-23 views

Superoxide Generating Activity of Nicotinamide Coenzymes

Sirota T.

摘要

It has been shown that nicotinamide coenzymes (NADPH, NADH, NADP+, NAD+) are capable of generating superoxide anions (O2─●) in an alkaline environment. The superoxide-generating activity of coenzymes is associated with high pH values and is sensitive to SOD. However, nicotinamide itself, being a functional part of coenzyme molecules, does not have this property. Polarographic studies have shown that in the presence of coenzymes, molecular oxygen is consumed from the buffer, namely oxygen activation occurs due to the formation of O2-●. Based on the results obtained and in accordance with the literature, our observations suggest that the formation of adducts of nicotinamide, which is part of the coenzyme molecule, and hydroxyl anions (OH−) may lead to the formation of O2─●. Under mild conditions in the organism, the studied coenzymes, while performing their main functions, are expected to generate superoxide, meaning that they can be signaling molecules.
Biofizika. 2024;69(1):24-31
pages 24-31 views

Annotation of a New Low Voltage Activated Calcium Channel of Trichoplax adhaerens (Phylum Placozoa)

Kuznetsov A., Kartashov L.

摘要

Studying the voltage-gated calcium channels sheds light on the formation of systems responsible for the coupling of sensors and actuators in a living cell. A homologue of 2090 aa lUNKth in the Trichoplax sp. H2 scaffold and an incomplete protein of 1510 aa lUNKth in the Trichoplax adhaerens scaffold were identified on the basis of the data on the voltage-gated calcium channel TCav3 (2063 aa) from the Trichoplax adhaerens cells. The incomplete hypothetical protein is annotated as Cav3-channel. An EEDD selective filter was found for all 3 proteins and the calcium channel core structure consisting of 24 trans-membrane α-helices was reconstructed. However, the studied proteins demonstrated significant variations in their cytoplasmic domains that indicates the different specialization of Cav3-channels in the signal transduction. So part of the AID motive (alpha-interacting domain) and the adjacent potential sensor from the annotated channel have homologies in 25 species of bony fish, and the corresponding region from both other channels in 41 species of bony fish and in 4 species of snakes was found. Significantly, a highly conserved IIS1-S2 loop with the IEHHNQP sequence was identified lower from the AID motif of bony fish, like in Trichoplax, while the homologous IEHHEQP sequence was revealed in snakes, which differs in the negative residue of glutamic acid that is also present in the corresponding proteins of the rat and human. A modular mechanism for the evolution of Cav3-channels by insertions and merging of protein domains that perform various regulatory functions is suggested based on the analysis of primary transcripts and mature proteins.
Biofizika. 2024;69(1):32-52
pages 32-52 views

Spatial Structure of the Casoxin C Molecule

Akhmedov N., Agaeva L., Abbasli R., Ismailova L.

摘要

A theoretical conformational analysis was performed to study the conformational possibilities for thecasoxin C molecule (Tyr1-Ile2-Pro3-Ile4-Gln5-Tyr6-Val7-Leu8-Ser9-Arg10-OH). The potential functionof the system is chosen as a sum of non-valence, electrostatic and torsion interactions and the energy of hydrogen bonds. The low-energy conformations of the casoxin C molecule were found, the values of dihedralangles of the main and side chains of the amino acid residues that make up the molecule were determined,and the energy of intra- and interresidual interactions was estimated. It has been shown that the spatial structure of the casoxin C molecule is represented by conformations of eight shapes of the peptide skeleton. Theresults obtained can be used to elucidate the structural and structural-functional organization of casoxin molecules.
Biofizika. 2024;69(1):53-61
pages 53-61 views

Differential Scanning Calorimetry of Edible Plant-based Protein Using Glycerol as a Medium

Lukin A., Dotlov M., Pozdnyakov N., Shilov S., Sadreeva R., Beloklokov D., Zalyatdinov A., Kononenko V., Sogorin E.

摘要

Plant-based protein isolates are common food ingredients. Differential scanning calorimetry is used to forecast functional properties of these isolates as well as to evaluate the propensity of these isolates for bioplastic formation through heat-induced formation of intermolecular disulfide, hydrophobic, and other types of bonds. In this work, differential scanning calorimetry was employed in the study of a suspension containing soy protein isolate and glycerol. It was shown that heat release occurred upon heating the isolate in the presence of glycerol. Preheating-induced denaturation of soy proteins in aqueous solution (95°С, 30 min) made the observed heat more exothermic, whereas exothermic reaction was not observed during enzymatic hydrolysis of the protein. Since adding β-mercaptoethanol to soy protein isolate had no effect on the observed exothermic process, this chemical compound could not contribute to formation of new disulfide bonds. Thus, bioplastic formation using soy protein isolate occurs independently of the formation of new disulfide bonds, and differential scanning calorimetry can be used to assess protein solubility.
Biofizika. 2024;69(1):62-68
pages 62-68 views

Identification of Two QTLs Contolling Flax Resistance to Fusarium Wilt

Rozhmina T., Kanapin A., Bankin M., Samsonova M.

摘要

Bulk segregant analysis was applied to the evaluation of F2 population developed by crossing two flax cultivars which differ in the resistance genes to Fusarium wilt. The causative agent of this disease, the fungus Fusarium oxysporum f. sp. lini, is one of the main flax pathogens causing enormous economic damage to the linen industry worldwide. DNA pools of highly resistant and susceptible F2 plants to Fusarium wilt were sequenced and subsequent data analysis identified two regions on chromosomes 9 and 13 that conferred resistance to Fusarium wilt. Candidate genes for subsequent analysis were selected by functional gene annotation and by analyzing the expression of genes in QTL regions based on data generated in transcriptomic experiment made with the infected flax cultivar Atalante resistant to Fusarium. By combining these two approaches, three candidate genes were identified within each of QTL regions which, according to the literature data, are involved in the plant response to infection and have been differentially expressed in the transcriptomics experiment.
Biofizika. 2024;69(1):69-76
pages 69-76 views

Cell biophysics

Morphometric Analysis of Serotoninergic Structures in the Nervous System of Planarian Schmidtea mediterranea

Kuznetsov G., Mitkovskii D., Kreshchenko N.

摘要

The nervous system of planarians includes cerebral ganglia situated in the anterior part of the body and a pair of well-defined ventral nerve cords that extend throughout the whole animal. Serotoninergic components of the nervous system were determined by indirect method of immunocytochemical staining of whole mount tissue preparations of planarians Schmidtea mediterranea, followed by analysis using a fluorescence microscope. The results obtained show the presence of serotoninergic components in the central and peripheral parts of the nervous system of planarians S. mediterranea. The morphological parameters of serotonin-immunopositive structures were estimated, as well as neuron counts in the cerebral ganglion were done. The measurements were carried out on micrographs taken through a digital camera from stained whole mount preparations. The size of serotonin neurons in three areas of the body, the thickness of the nerve trunks and cerebral ganglion, and the distance between the nerve cords and transversal commissures were taken into consideration. For the first time, the new quantitative data were obtained characterizing the morphological properties of the nervous system of planarian S. mediterranea. Also, the observation of the eyes regeneration in planarians in response to decapitation and exposure to serotonin was performed. It was found that exogenous serotonin at concentrations of 0.01–1 μm accelerated eye differentiation during the regeneration of the head end of S. mediterranea planarian.
Biofizika. 2024;69(1):77-89
pages 77-89 views

Astaxanthin Prevents Dysregulation of Mitochondrial Dynamics in Rat Brain Mitochondria Induced under Isoproterenol-Induced Injury

Krestinin R., Baburina Y., Odinokova I., Sotnikova L., Krestinina О.

摘要

Mitochondria are involved in the development of diseases with different etiologies. The use of drugs which can enhance the functional state of mitochondria may turn into a promising therapeutic approach to diseases with different etiologies. Astaxanthin, a keto-carotenoid (xanthophyll) predominantly of marine origin, shows both lipophilic and hydrophilic properties and can penetrate the cell membrane to localize to mitochondria where it prevents mitochondrial dysfunction. This study examined the effect of astaxanthin on the functional state of rat brain mitochondria, investigated the changes in mitochondrial dynamics and mitophagy under isoproterenol-induced injury. In the presence of astaxanthin, mitochondria were more resistant to Ca2+-induced opening of a nonspecific pore, and the activity of complexes I, IV and V of the respiratory chain increased. Moreover, the presence of astaxanthin led to altered mitochondrial fission and fusion as well as mitophagy, in isoproterenol-induced mitochondrial dysfunction. This presumably increased the quantity of rat brain mitochondria and enhanced their functional state. Astaxanthin can be considered as a mitochondria-targeted agent in therapy in pathological conditions associated with oxidative damage and mitochondrial dysfunction caused by acute heart failure. Astaxanthin as a dietary supplement has the potential to provide antioxidant protection to cells in cardiovascular disease.
Biofizika. 2024;69(1):90-102
pages 90-102 views

Antitumor and Cytotoxic Effects of Silver Polyacrylate

Ostrovskaya L., Korman D., Nekrasova E., Chigasova A., Bluhterova N., Rikova V., Fomina M., Khochenkova Y., Abzaeva K.

摘要

Silver polyacrylate (argacryl) exerts antitumor activity against murine solid tumors in vivo and exhibits cytotoxic effects on human tumor cells in vitro. Argacryl enhances the antitumor effect of cisplatin (a murine Lewis lung carcinoma cell line) and does not show cross-resistance to cisplatin and doxorubicin (MCF-7, human breast cancer cells). The molecular mechanism of action of argacryl is associated with the induction of DNA single-strand breaks in the absence of cross-linking in the DNA molecule.
Biofizika. 2024;69(1):103-115
pages 103-115 views

Complex systems biophysics

Electrogenesis in the Root Environment of Various Lettuce Varieties

Kuleshova T., Gasieva Z., Rusakov D., Galushko A., Panova G.

摘要

Bioelectrochemical systems based on electroactive processes in the root environment of plants are a promising direction for the combined production of green electricity and plant products. This work aimed to investigate the dynamics of the potential differences formation in the root environment, diffuse reflectance indices of leaves, fluorescence parameters, morphometric and biochemical characteristics of the lettuce varieties (Chinese curly, Chinese red-green, Ballet, Cockarde, Mercury, Dubrava, Robin) and Solos F1 hybrid. A maximum potential difference of 430 mV was observed for the Mercury variety, and a minimum potential difference of 352 mV was determined for the Chinese curly variety. Analysis of measurements taken including morphometric, biochemical and photosynthetic characteristics in addition to electrical parameters revealed that the Ballet lettuce variety showed the best parameters among other lettuce varieties under study. It is evident based on the data obtained that it is possible to create agrophytocenoses that include plants capable of high and stable electricity generation along with high productivity and good quality of the resulting plant products due to the effective absorption and conversion of light energy.
Biofizika. 2024;69(1):116-129
pages 116-129 views

Low-frequency Oscillations of Functional Indicators of the Body

Grishin O., Grishin V.

摘要

A number of our studies have shown that low-frequency (LF) oscillations in the functional parameters of the oxygen transport system are stable and synchronized with one another. The literature presents a large number of examples of LF oscillations in various functional parameters that are directly or indirectly related to energy metabolism. In parallel, artificially induced damped and constant spontaneous oscillations related to energy produced by the mitochondria over a range of LF frequencies have been studied for more than 40 years. A parameter study is therefore needed to find the connection between the oscillation amplitudes and the physical characteristics both of the oxygen transport system and mitochondria that operate on common LF range (0.003–0.03 Hz). We believe the nature of all these oscillation amplitudes to be affected by the periodic dynamics of energy dissipation in mitochondria that form an interconnected network. The process of creating these oscillations occurs in two phases. In the 1st phase, the amount of Са2+ entering the mitochondria exceeds the amount of Са2+ released by mitochondria thereby promoting an increase in oxidative phosphorylation efficiency. In the 2nd phase, Са2+ efflux from mitochondria prevails over Са2+ influx and is accompanied by inhibition of oxidative phosphorylation. The oscillations remain stable and spontaneous and arise from an “autocatalytic” interaction based on feedback mechanisms. The inertia of the processes of a full cycle (1st and 2nd phases) that lasts 1–3 minutes may be due to the capacity of the phosphate buffer of mitochondria. The structural basis for synchronizing oscillations at the tissue level may be mitochondrial networks of excitable tissues. Synchronization at the organism level between mitochondrial oscillations and fluctuations in parameters associated with energy metabolism can be achieved through a system of tunnel nanotubes.
Biofizika. 2024;69(1):130-145
pages 130-145 views

Peculiarities of Purinergic Modulation of Myoneural Transmission in Presence of Capsaicin

Khairullin A., Mukhamedyarov M., Mukhamedzyanov R., Kashtanova N., Zhivotova E., Suchkova G., Shaikhutdinova A., Eremeev A., Grishin S.

摘要

This study aimed to investigate myoneural transmission in the presence of capsaicin that acts as an “integrator of painful stimuli and causes heat sensation”. The effects of purines such as ATP and adenosine that participate in synaptic transmission in presence of capsaicin have been explored. When the muscle-nerve preparation of frog was perfused with solution containing capsaicin, the inhibitory effects of both purines were significantly reduced. A reduction of the depressant effects of adenosine is associated with the inhibition of A1 signaling, since the A2A receptor agonist CGS21680 showed pronounced, almost completely hidden in the control, potentiating effect in presence of capsaicin. Our findings suggest that the known neuroprotective effect of capsaicin is primarily due to elimination of inhibition by endogenous purines of the induced quantum output of the neurotransmitter.
Biofizika. 2024;69(1):146-151
pages 146-151 views

Content of Nitrogen Monoxide and Copper in the Hippocampus of a Rat Model of Short-Term Cerebral Ischemia Followed by Reperfusion

Gainutdinov K., Andrianov V., Yafarova G., Bazan L., Bogodvid T., Iyudin V., Filipovich T., Shanko Y., Tokalchik Y., Kulchitsky V.

摘要

Electron paramagnetic resonance (EPR) spectroscopy was used to determine the content of nitric oxide (NO) and copper in the hippocampus of healthy rats and rat models of ischemia. The rat model of ischemia was established via both carotid arteries ligation and ligation of the carotid arteries with subsequent withdrawal of a 3 ml of blood from the common carotid artery. The EPR signals of the (DETC)2-Fe2+-NO and Cu(DETC)2 complexes were recorded. The NO level in the hippocampus showed a significantly drop by an average of 28% one day after modeling ischemic stroke caused by carotid artery ligation and by 56% in the rat model of ischemia established via ligation of the carotid arteries with subsequent withdrawal of a 3 ml of blood from the common carotid artery. The copper content decreased significantly in the hippocampus by an average of 20% one day after modeling ischemia by ligation of the carotid arteries and our findings indicate that the copper content tends to decrease in the rat model of ischemia established via ligation of the carotid arteries with subsequent withdrawal of blood. High variability couldn’t tell us if there was a significant difference between groups, though. Thus, brain hypoxia of rats subjected to carotid arteries ligation is accompanied not only by a decrease in NO production in the hippocampus, but also by signs of a weakening of the antioxidant system, thus, worsening conditions for the maintenance of homeostasis.
Biofizika. 2024;69(1):152-160
pages 152-160 views

Physical Parameters of Arterial Thrombus as a Porous Medium

Bershadsky E., Nechipurenko D.

摘要

The formation of a hemostatic thrombus is a key response of the hemostasis system to a wide range of possible vessel injuries. The basic mechanism of thrombus formation at high shear rate is platelet adhesion and aggregation. It is known that arterial thrombi are spatially heterogeneous. Such heterogeneity is thought to be due to the heterogeneous distribution of the platelet activators inside the thrombus. Spatiotemporal dynamics of molecules, which are involved in thrombus formation, depends on rates at which the substrates are transported. To explore the dynamics of arterial thrombus formation, continuum models that represent the thrombus as a porous media are currently widely used. Still, choosing parameters for these models is complicated due to a high level of uncertainty in the published experimental data. This review is focused on the analyses of the literature data on physical parameters of the arterial thrombus as a porous medium. Special attention is paid to the parameters of the thrombus shell, which is generally characterized by the higher values of porosity and permeability.
Biofizika. 2024;69(1):161-172
pages 161-172 views

Hafnium Complexes as Dose Enhancement Agents for Photon Capture Therapy and as Contrast Agents for Radiotherapy

Lipengolts A., Skribitsky V., Finogenova Y., Shulyak A., Abakumov M., Bykov A., Grigorieva E., Smirnova A., Shpakova K., Zhizhin K.

摘要

Hafnium is a promising element as contrast agent for diagnostic and therapeutic radiology. Currently there is no suitable hafnium drugs with renal excretion, which can be used in radiology. In this work two new hafnium complexes with nitrilotriacetic acid (Hf-NTA) and 1,2-diaminocyclohexanetetraacetic acid (Hf-CDTA) were synthesized and studied for acute toxicity and biodistribution. Inorganic chemistry methods were used for Hf-NTA and Hf-CDTA synthesis. Acute toxicity was studied in female mice C57Bl/6. Biodistribution and contrast properties studies of Hf-CDTA were made in vivo with micro-CT. Mice with transplanted subcutaneous mammary adenocarcinoma Ca755 were used for the study. Median lethal dose (LD50) of Hf-CDTA was assessed as 408 ± 64 mg Hf/kg and of Hf-NTA less than 120 mg Hf/kg. CT imaging of mice intravenously injected with Hf-CDTA confirmed its renal excretion and contrast capability. CT imaging of tumor region with single intratumoral administration of Hf-CDTA showed promising hafnium concentration and retention in tumor for use in contrast enhanced radiotherapy. Hf-CDTA showed acceptable toxicity and biodistribution in mice with subcutaneous tumors for biomedical application in radiology and radiotherapy. For diagnostic clinical application Hf-CDTA formulation must be improved to increase water solubility and decrease toxicity. Hf-NTA appeared to be unacceptably toxic for radiological application.
Biofizika. 2024;69(1):173-182
pages 173-182 views

Regularities of Induction and Growth of Tumors in Mice upon Irradiation of Ehrlich Carcinoma Cells ex vivo and in vivo with a Pencil Scanning Beam of Protons

Rozanova O., Smirnova E., Belyakova T., Strelnikova N., Smirnov A.

摘要

The patterns of tumor induction and growth in mice were studied under single irradiation with a proton beam at doses of 30, 60, and 80 Gy of Ehrlich carcinoma cells under ex vivo and in vivo conditions. It was shown that the frequency of tumor induction after proton irradiation of Ehrlich carcinoma cells ex vivo at a dose of 30 Gy was lower than after irradiation in vivo, and at doses of 60 Gy and 80 Gy, the number of tumors was the same. The temporal patterns of tumor occurrence during irradiation of Ehrlich carcinoma cells ex vivo differed significantly from in vivo irradiation: the period of time when the appearance of new tumors was recorded in the ex vivo groups was the same for all doses, and during in vivo irradiation it had a dose dependence. The growth rate of Ehrlich carcinoma tumors after cell irradiation ex vivo and in vivo did not depend on the dose, the method of irradiation, or the time of their occurrence, but was significantly lower than in the control group. The results obtained are of interest for understanding the mechanisms of manifestation of potentially lethal damage to tumor cells, the role of the tumor microenvironment in the induction of relapses and ways to overcome them using the potential of proton therapy, as well as for the development of biomedical models to search for optimal targets for hadron cancer therapy.
Biofizika. 2024;69(1):183-192
pages 183-192 views

Medical biophysics

Fluctuation Dielectric Fourier Spectrometer and Rapid Evaluation of Blood Cell Characteristics

Kovalev A., Grinstein Y., Maltseva A., Krukova O., Soukhovolsky V.

摘要

A method for determining a state of formed elements from dielectric properties is considered. A design of a fluctuation dielectric Fourier spectrometer is presented which offers the possibility of estimating the distribution of blood cells according to the state of membranes. To demonstrate this method, experiments on the assessment of the functional state of patients with coronary heart disease and experiments on the effect of Ehrlich ascites carcinoma in laboratory mice are described. It has been shown that using the proposed spectrometer, it is possible to obtain rapid assessments of changes in blood characteristics in diseases and to reveal dynamics of pathological processes in animals after infection.
Biofizika. 2024;69(1):193-201
pages 193-201 views

Effects of the Pulsating Flow of Cerebrospinal Fluid on Spinal Pathologies

Zverev A., Tokarev Y.

摘要

Based on cerebrospinal fluid flow dynamic parameters, an original formula for assessing pathology of the spinal motion segments of the vertebra is given. In this paper, graphs are used to clearly show changes in pathology depending on the depth of trauma. The data collected can be useful for computed tomography and magnetic resonance imaging technicians, who still describe pathology in a simple way.
Biofizika. 2024;69(1):202-208
pages 202-208 views
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