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Vol 61, No 6 (2025)

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Articles

Modern Methods of Inorganic Polyphosphate Analysis in Biological Samples (Review)

Trilisenko L.V., Kulakovskaya T.V.

Abstract

Inorganic polyphosphates (polyP) are universal regulatory compounds and participate in the control of gene expression, stress adaptation, membrane transport, and cell motility. They plays important role in bone tissue development, thrombosis and inflammation processes, signal transmission in nerve cells, and amyloid formation. These polymers are participate in phosphorus homeostasis both in living cells and natural and technogenic ecosystems. PolyP are used as fertilizers, food additives, and water treatment compound and flame retardant. Modern highly sensitive and specific methods for polyP analysis are necessary for solving fundamental problems of biochemical process regulation and for a number of practical tasks, such as monitoring the state of environmental objects, food quality, and developing new methods for treating bone diseases, the cardiovascular system, and neurodegenerative pathologies. Currently, efficient and highly specific methods for polyP assay have been developed, such as special extraction methods, enzymatic analysis, electrophoresis, DAPI staining, and microscopic methods, including micro-X-ray analysis. NMR retains its importance, especially for determining the polymer chain length. In this review, we consider polyP analysis methods from the point of view of problems solved in the study of various biological objects, with special attention to the most modern and widespread approaches.
Applied Biochemistry and Microbiology. 2025;61(6):531–546
pages 531–546 views

Optimization of RNA Structure Enhances Biosynthesis of L-Asparaginase from E. coli During Gene Overexpression

Shaifutdinov R.R., Orlova N.A., Vorobyev I.I.

Abstract

A highly efficient expression system for recombinant type II L-asparaginase from Escherichia coli (EC 3.5.1.1) was developed using a synthetic gene optimized for the folding energy of mRNA secondary structures in the 5'-region. The engineered E. coli BL21[DE3]/pET28a-AsnSYN strain produced up to 291 ± 9 mg/L of enzymatically active protein (44.5 ± 2.6 mg/(L·OD)) in shake-flask cultures, 50% higher than the control strain with the native gene after 3 hours of induction. Codon optimization increased the mRNA secondary structure stability in the 5'-region from –70 to –47 kcal/mol, potentially improving translation efficiency. The purified asparaginase met pharmacopeial standards, with a total yield ≥25%, specific activity >250 IU/mg, and high purity (no detectable impurities by electrophoresis, <3% multimeric forms by gel filtration). These findings highlight the potential of synthetic gene design with DNA structure optimization for industrial-scale production of therapeutic enzymes.
Applied Biochemistry and Microbiology. 2025;61(6):547–559
pages 547–559 views

Increased Survival Rate of Probiotic Cultures in the Upper Gastrointestinal Tract during Storage Using a New Biocompatible Gel

Galuza O.A., Khramova A.V., Polishchuk E.K., El-Registan G.I., Nikolaev Y.A.

Abstract

Immobilization of lactic acid bacteria (using Enterococcus faecium as an example) in silanol-humate gels (SHG) not only increases the number of viable cells during long-term storage compared to the control (as previously shown), but also enhances their potential probiotic properties. The antagonistic activity against test strains of microorganisms (E. coli, S. aureus, and Y. lipolytica) increases by 0.7–5 times compared to planktonic cultures. The number of E. faecium in SHG under conditions of acid and enzymatic stress, simulating the conditions of the upper parts of the human gastrointestinal tract, is maintained at a level of 30–80% of the initial level, while in the control (unstabilized preparation), almost complete cell death is observed. Technological indicators of fermented milk products obtained using immobilized in SHG E. faecium as starters improve: the time of clot formation is reduced from 48 to 44 hours, the organoleptic assessment increases. The safety of SHG for animals has been demonstrated when ingested at doses not exceeding 5 g/kg/day. SHG can be recommended for use in veterinary medicine and the food industry as a feed additive-adsorbent and stabilizer of probiotic cultures as components of food products.
Applied Biochemistry and Microbiology. 2025;61(6):560–574
pages 560–574 views

Bioleaching of Nickel-Containing Metallurgical Slag by Chemolithotrophic Microorganisms at Various Temperatures

Fomchenko N.V., Novikov G.V., Melamud V.S., Muravyov M.I.

Abstract

The bioleaching process of metallurgical slag containing nickel and copper was investigated at temperatures of 40, 45, and 50°C. The experiments involved microbial communities cultivated at 40 and 45°C, which comprised the bacteria Leptospirillum ferriphilum and Sulfobacillus thermosulfidooxidans. The microbial community established at 50°C included representatives of S. thermosulfidooxidans and Acidiplasma sp. The findings indicate that the dissolution of the solid phase and the oxidation of ferrous iron by microorganisms reached their highest levels at 45°C. Under these conditions, the majority of copper (95.5–100%) and nickel (92.3–100%) released into solution within the first day of bioleaching. Kinetic studies of chemical leaching of non-ferrous metals during the initial four hours demonstrated that the presence of 5 g/l Fe3+ resulted in the extraction of 93.0% nickel and 94.3% copper, whereas, in the absence of Fe3+, 75.0% of nickel and 77.8% of copper were extracted.
Applied Biochemistry and Microbiology. 2025;61(6):575–582
pages 575–582 views

Effect of Endophytic Bacteria Bacillus subtilis on Components of the Pro-/Antioxidant System of Tomato Plants (Solanum lycopersicum L.) Infected with Potato Viruses X and Y

Veselova S.V., Sorokan A.V., Alekseev V.Y., Maksimov I.V.

Abstract

Currently, the most promising and environmentally friendly method of combating viral diseases is considered to be the use of plant growth promoting bacteria (PGPB) and their metabolites, which can exhibit both direct antiviral activity and stimulate the defense mechanisms of host plants. In this work, the ability of endophytic bacteria Bacillus subtilis (Cohn.) strains 26D and Ttl2 to suppress the reproduction of potato virus Y (PVY) and potato virus X (PVX) on tomato plants (Solanum lycopersicum L.) and to stimulate the growth of infected plants by regulating the redox balance was discovered. Bacterial strains B. subtilis 26D and B. subtilis Ttl2 reduced the titer of PVY and PVX in tomato plants, restored their growth to control values, which was accompanied by a decrease in symptoms and severity of the disease. PVY and PVX disrupted the redox status of plants for their development. Bacterial strains B. subtilis 26D and B. subtilis Ttl2 regulated the generation of hydrogen peroxide by changing the activity of catalase and positively affected the activity of peroxidases of tomato plants infected with PVY or PVX, which suggests the possibility of using these strains as a basis for creating an antiviral biocontrol agent.
Applied Biochemistry and Microbiology. 2025;61(6):583–591
pages 583–591 views

Bacterial Producers of Brassinosteroids

Aleschenkova Z.M., Ananyeva I.N., Naumovich N.I., Litvinovskaya R.P., Sauchuk A.L., Denisiuk D.V., Khripach V.A.

Abstract

The production of the most studied, active and widespread groups of brassinosteroids by salt-tolerant bacteria Priestia megaterium Ср-1, Rhodococcus jostii CA-6 and Pseudomonas koreensis FP2/1 isolated from saline soil samples was studied. It was shown that the studied bacterial strains are capable of producing steroidal phyto-hormones of the brassinolide, 24-epibrassinolide and 28-homobrassinolide groups, as well as brassinosteroid B-ketones, B-lactones and 6-deoxo derivatives. This circumstance may be the reason for the growth-stimulating activity of these bacteria and their effect on plant adaptation to stress factors.
Applied Biochemistry and Microbiology. 2025;61(6):592–599
pages 592–599 views

Estimation the Oxidation Efficiency of Petroleum Hydrocarbons by Bacterial Consortia Isolated from the Seas of Japan and Okhotsk

Kim A.V., Bogatyrenko E.A., Dunkai T.I.

Abstract

We have created microbial consortia from native hydrocarbon-oxidizing bacteria isolated from the Seas of Japan and Okhotsk, which not only have hydrocarbon-oxidizing activity, but also accelerate oil degradation due to additional properties (hydrophobicity to petroleum hydrocarbons, emulsifying and lipolytic activity). In addition to typical oil oxidizers, the consortia included bacteria of the genera Niallia, Rossellomorea and Patulibacter, whose hydrocarbon-oxidizing activity was studied for the first time. The established microbial consortia demonstrated high efficiency of oil oxidation in model experiments at salinity 30–40‰ and temperatures of 5 and 22°C. The degree of oxidation of oil on the 28th day of the experiment was 78–94%.
Applied Biochemistry and Microbiology. 2025;61(6):600–610
pages 600–610 views

Growth Study Arthrospira platensis Gomont Culture in a Two-Stage Luminostat

Gevorgiz R.G., Lelekov A.S., Beregovaya N.M.

Abstract

The work is devoted to the experimental study of Arthrospira platensis culture growth in a two-stage luminostat. A new method of flow culture is presented, which allows to increase the efficiency of light energy assimilation, as well as to control the content of photosynthetic pigments in algal biomass. In the first stage, the growth of A. platensis culture in the first stage of luminostat in batch mode was investigated. Due to high surface and spatial irradiance, a prolonged exponential phase is present on the growth curve. The maximum specific growth rate of the culture was 0.96 1/day and the chlorophyll a and C-phycocyanin content was low – 1.37 and 2.3% respectively. The light energy passing through the first stage varied from 2.23 to 33.24% depending on the maintained density of the quasi-continuous culture. The reduction in light flux affected the maximum productivity of A. platensis in the second stage of luminostat, which was 0.08 g/(l·day). In the second experiment, cultivation was carried out in a two-stage luminostat regime, in which the nutrient medium was sequentially flowed through both stages. It was shown that in the second stage, due to a decrease in irradiance, photoadaptation of A. platensis cells occurred, consisting in a slight increase in the proportion of chlorophyll a and a significant increase in C-phycocyanin – 13.6 %. The pigment content was directly influenced by the uniformity of cell irradiation, which for the second stage was only 8 %, which led to a decrease in productivity and an increase in the content of C-phycocyanin. The obtained results allow us to recommend the two-stage luminostat for optimisation problems solving on obtaining microalgae biomass of a given pigment composition.
Applied Biochemistry and Microbiology. 2025;61(6):611–619
pages 611–619 views

Exogenous Abscisic Acid and Its Effect on Seed Germination of Wheat and Triticale

Arabova L.I., Chumikina L.V., Arabov R.I., Topunov A.F.

Abstract

This study investigated the effects of exogenous abscisic acid (ABA) on early germination processes in seeds of two cereal crops: wheat and triticale (a hybrid of wheat and rye). A clear relationship was established between growth processes and both the concentration of ABA and the imbibition stage at which ABA was applied. At moderate to high concentrations (10–6–10–4 M), ABA acted as an inhibitor of physiological processes. Early stages of seed germination, specifically those involving physical swelling and radicle emergence, were found to be highly sensitive to ABA. Furthermore, a high concentration of exogenous ABA (10–4 M) inhibited the mobilization of protein reserves in the wheat embryo, which may contribute to the overall inhibition of germination.
Applied Biochemistry and Microbiology. 2025;61(6):620–629
pages 620–629 views

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