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Volume 42, Nº 3 (2016)

Article

Antimicrobial peptides of invertebrates. Part 1. structure, biosynthesis, and evolution

Balandin S., Ovchinnikova T.

Resumo

Antimicrobial peptides and proteins (AMPs) are among the most important components of the immune system of multicellular organisms. The role of AMPs is of particular importance for invertebrates which constitute the vast majority of species diversity of the living world, because these animals lack acquired immunity. The AMPs of animal origin are ribosomally-synthesized molecules that have, as a rule, a positive net charge and amphiphilic properties. They can act against bacteria, yeast and filamentous fungi, protozoa, and enveloped viruses. AMPs can also play a role of mediators of the immune system. Search and investigation for protective factors of the invertebrate host defense provide a better understanding of mechanisms of the innate immunity of humans and other mammals and give a key to a development of new medicines. The first part of this review focuses on special features of a structure, biosynthesis, regulation of gene expression, and molecular evolution of AMPs of invertebrates.

Russian Journal of Bioorganic Chemistry. 2016;42(3):229-248
pages 229-248 views

Biological activity of usnic acid and its derivatives: Part 2. effects on higher organisms. Molecular and physicochemical aspects

Luzina O., Salakhutdinov N.

Resumo

Usnic acid (UA) is a commercially available lichen metabolite. Its biological activity is diverse, and it is of interest for pharmacopoeia. The second part of the review is dedicated to the biological action of UA and its derivatives on higher organisms. Effects exhibited by UA at the cellular level and the molecular and physicochemical aspects of its biological activity are considered. Special attention is placed on the possibility of modifying the biological activity of UA by change of its bioavailability or modification of its molecular structure.

Russian Journal of Bioorganic Chemistry. 2016;42(3):249-268
pages 249-268 views

The synthetic peptide octarphin activates soluble guanylate cyclase in macrophages

Sadovnikov V., Zinchenko D., Navolotskaya E.

Resumo

The effect of the peptide octarphin (TPLVTLFK), a selective agonist of the nonopioid β-endorphin receptor, on the activity of soluble (sGC) and membrane-bound guanylate cyclase (mGC) of peritoneal macrophages from mouse, rat, and guinea pig has been studied. It has been found that, in the concentration range of 10–1000 nM, octarphin increases the activity of sGC and has no effect on the activity of mGC in macrophages of these species. The activating effect of the peptide toward sGC was dose-dependent and was maximal at a concentration of 100 nM. These results indicate that the increase in the concentration of guanosine 3',5'-cyclophosphate in macrophages in the presence of octarphin occurs through the activation of sGC. It can be stated that the activating effect of octarphin on peritoneal macrophages is accomplished in the following way: an increase in the activity of inducible NO synthase → an increase in NO production → activation of sGC → an increase in the intracellular cGMP level.

Russian Journal of Bioorganic Chemistry. 2016;42(3):269-271
pages 269-271 views

Purification and characterization of two glutathione peroxidases from embryo of the camel tick Hyalomma dromedarii

Ibrahim M., Mohamed M., Ghazy A., El-Mogy M., Masoud H.

Resumo

Two glutathione peroxidase isoenzymes were purified from 24-day old embryos of the camel tick Hyalomma dromedarii and designated tick embryo glutathione peroxidase 1 and 2 (TEGPx1 and TEGPx2). The purification procedure involved ammonium sulfate precipitation, as well as ion exchange and gel filtration column chromatography. Glutathione peroxidase isoenzymes subunit molecular mass was determined by SDS-PAGE to be 36 ± 2 kDa and 59 ± 1.5 kDa for TEGPx1 and TEGPx2, respectively. TEGPx1 isoenzyme exhibited a dimeric structure with native molecular mass of 72 kDa while TEGPx2 was a monomeric protein. TEGPx1 and TEGPx2 displayed their pH optima at 7.6 and 8.2. Both isoenzymes cleaved preferentially H2O2 with Km values of 24 and 49 μM. Iodoacetamide competitively inhibited TEGPx1 with Ki value of 0.45 mM and 1.10; phenanthroline competitively inhibited TEGPx2 with Ki value of 0.12 mM. These results indicate the presence of two different forms of glutathione peroxidase in the developing camel tick embryos. This finding enhances our knowledge and understanding of the physiology of these ectoparasites and will encourage the development of new and untraditional control methods.

Russian Journal of Bioorganic Chemistry. 2016;42(3):272-281
pages 272-281 views

Computational prediction of micrornas and their target genes in rainbow trout (Oncorhynchus mykiss)

Huang Y., Ma X., Yang Y., Gao X., Ren H., Zhang C.

Resumo

MicroRNAs (miRNA) are non-coding small RNA molecules consisting of 20–24 nucleotides (nt), which regulate gene expression negatively at the post-transcriptional levels depending on the extent of complementation between miRNA and mRNA in a variety of eukaryotic organisms. They have attracted increasing attention recently. To date, a total of 1637 mature miRNAs from fishes have been deposited in the miRBase database (Release 21) and they are just a small portion of the miRNAs described in fish species. Especially in rainbow trout (Oncorhynchus mykiss) miRNAs, it is far from the numbers of miRNAs found in other fishes and many more miRNA remain to be discovered. In present study, we used known animal miRNAs to systematically search miRNA homologs in available expressed sequence tags (EST), genomic survey sequences (GSS), and transcript sequence assemblies (TSA) of O. mykiss based on the conservation of miRNA sequences. Following the filtering with a combination of stringent criteria, 39 miRNAs belonging to 25 independent families were identified, of which 14 are novel identified miRNAs firstly in O. mykiss. The randomly selected 13 miRNAs were verified by stem-loop RT-PCR indicating that the prediction method that we used to identify the miRNAs was effective. Furthermore, total of 94 target genes were predicted and their probable functions were illustrated. Their target genes are involved in transcription factors, development, metabolism, signaling, immunity, and cell division. The current study has provided an update on O. mykiss miRNAs and their targets, which will be helpful for future research on miRNA-mediated gene regulation in this important fish species.

Russian Journal of Bioorganic Chemistry. 2016;42(3):282-293
pages 282-293 views

Staphylococcal enterotoxin a detection with phage displayed antibodies

Fursova K., Shchannikova M., Shepelyakovskaya A., Pavlik L., Brovko F.

Resumo

A technique for detection of staphylococcal enterotoxin A with sandwich enzyme-linked immunoassay (ELISA) was developed. Mouse monoclonal anti-SEA antibodies were used as capture antibodies and phage displayed anti-SEA scFv were used as detection antibodies. The limit of detection was 6–12.5 ng/mL for different pairs of antibodies. Some conditions of phage-displayed antibodies for storage in dissolved and lyophilized state were examined. It was shown the use of trehalose and arginine preserved the functional activity of phage-displayed antibodies.

Russian Journal of Bioorganic Chemistry. 2016;42(3):294-299
pages 294-299 views

Delivery of lactoferrin to cells using biodegradable microcapsules

Kochetkova O., Yurinskaya M., Shabarchina L., Suslikov A., Naumov A., Tikhonenko S., Vinokurov M.

Resumo

The possibility of the effective delivery of lactoferrin to the cells of the innate immune system (neutrophils and monocytes) by means of biodegradable polyelectrolyte microcapsules has been shown. A study of the effect of the structural component of microcapsules, poly-L-arginine, has shown that the production of reactive oxygen species (ROS) was maximum at a concentration of the polyelectrolyte of 0.5 μg/mL. Increasing the polycation concentration significantly decreased the neutrophil viability and ROS production. The study of neutrophil apoptosis showed that hollow microcapsules containing no lactoferrin accelerated the apoptosis of phagocytes by 15–20%. Encapsulated lactoferrin inhibited the neutrophil apoptosis by 65–70%, whereas nonencapsulated lactoferrin decreased it by 35%. It was found that encapsulated lactoferrin reduced the production of TNF-α by THP-1 promonocytic cells to an approximately the same degree as nonencapsulated lactoferrin.

Russian Journal of Bioorganic Chemistry. 2016;42(3):300-304
pages 300-304 views

Novel fluorescent membrane probe 2,3;5,6-bis(cyclohexyl)-BODIPY-labeled phosphatidylcholine

Alekseeva A., Tretiakova D., Melnikova D., Molotkovsky U., Boldyrev I.

Resumo

The novel fluorescent membrane probe, bis(cyclohexyl)-BODIPY (BCHB)-labeled phosphatidylcholine, is structurally similar to 1,3,5,7-tetramethyl-BODIPY (TMB)-labeled phosphatidylcholine. Formally, BCHB and TMB have similar systems of conjugated bonds; however, spectral properties of the probes are notably different. BCHB and TMB have a perfect spectral overlap. The fact makes BCHB a good FRET acceptor for TMB. Thus, the pair of phosphatidylcholines labeled with BCHB and TMB is a good tool for FRET-based membrane studies, e.g. lipid transfer studies.

Russian Journal of Bioorganic Chemistry. 2016;42(3):305-309
pages 305-309 views

Antioxidant and α-glucosidase inhibitory phenolic constituents of Lactuca indica L.

Choi C., Eom H., Kim K.

Resumo

Lactuca indica L. (Compositae) has been used as a folk medicine for the treatment of intestinal disorders. Phytochemical constituents of L. indica were investigated, and their antioxidant and α-glucosidase inhibitory activities thoroughly studied. A phytochemical investigation of the aerial parts of L. indica resulted in the isolation and identification of eight phenolic compounds. The structures of the compounds were elucidated on the basis of spectroscopic evidence as apigenin, luteolin, isoquercitrin, chlorogenic acid, protocatechuic acid, p-hydroxymethyl benzoic acid, trans-cinnamic acid, and p-coumaric acid. Luteolin, isoquercitrin, chlorogenic acid, and p-hydroxymethyl benzoic acid showed antioxidant activities with IC50 values in the range of 35.5–52.5 μM. In addition, apigenin and luteolin showed α-glucosidase inhibition activities with IC50 values of 96.4 and 100.7 μM, respectively. These findings strongly suggest that L. indica is a potential source of natural antioxidants and/or anti-diabetic agents in pharmaceutical and health functional foods.

Russian Journal of Bioorganic Chemistry. 2016;42(3):310-315
pages 310-315 views

Synthesis and evaluation of cytotoxicity of 6-amino-4-aryl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carbonitriles

Atapour-Mashhad H., Soukhtanloo M., Massoudi A., Shiri A., Bakavoli M.

Resumo

Several derivatives of 6-amino-4-aryl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carbonitriles were synthesized via Biginelli type reaction and tested for their anti-proliferative activity on human breast cancer (MCF-7) and human colon carcinoma (HT29) cell lines. Malignant and non-malignant cells were cultivated in RPMI medium and incubated with different concentrations of these pyrimidines. Cell viability was evaluated by MTT assay. Apoptotic cells were determined using DAPI (4'-6-diamidino-2-phenylindole) and propidium iodide staining of DNA fragmentation by flow cytometry (sub-G1 peak). 6-Amino-4-(4-chlorophenyl)-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carbonitrile and 6-amino-4-[4-dimethylamino)phenyl]-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carbonitrile decreased the viability of MCF-7 and HT29 cells, in contrast to L929 cells. These compounds induced a sub-G1 peak inflow cytometry histograms of treated cells indicating that apoptosis is involved in their toxicity.

Russian Journal of Bioorganic Chemistry. 2016;42(3):316-322
pages 316-322 views

Microwave assisted synthesis of (E)-1-(2-((1-benzyl-1H-1,2,3-triazol-4-yl)methoxy)phenyl)-3-(9-ethyl-9H-carbazol-3-yl)prop-2-en-1-ones and their antimicrobial activity

Ashok D., Ravi S., Lakshmi B., Ganesh A., Adam S.

Resumo

A novel series of 1,2,3-triazolo-carbazole chalcones were synthesized by the Claisen-Schmidt condensation reaction followed by the copper catalyzed Huisgen (2 + 3) cycloaddition reaction by conventional as well as microwave irradiation methods. The structures of the newly synthesized compounds were established on the basis of IR, 1H NMR, 13C NMR, and mass spectral data. All the compounds were screened in vitro for antibacterial and antifungal activities.

Russian Journal of Bioorganic Chemistry. 2016;42(3):323-331
pages 323-331 views

Antimicrobial activities of some synthesized 1-(3-(2-methylphenyl)-4-Oxo-3H-quinazolin-2-yl-4-(substituted)thiosemicarbazide derivatives

Alagarsamy V., Anjana G., Sulthana M., Parthiban P., Solomon V.

Resumo

The substituted thiosemicarbazide moiety was placed at the C-2 position and 2-methylphenyl group at N-3 position of quinazoline ring and obtained compounds were tested for their antitubercular activities and antibacterial activities against selected gram-positive and gram-negative bacteria. The target compounds 1-(3-(2-methylphenyl)-4-oxo-3H-quinazolin-2-yl)-4-(substituted) thiosemicarbazides were obtained by the reaction of 2-hydrazino-3-(2-methylphenyl) quinazolin-4(3H)-one with different dithiocarbamic acid methyl ester derivatives. All synthesized compounds were also screened for their antimicrobial activity against selective gram-positive and gram-negative bacteria by agar dilution method. Among the series, 1-[3-(2-methylphenyl)-4-oxo-3H-quinazolin-2-yl]-4-[4-chlorophenyl]-thiosemicarbazide exhibited the most potent activity against S. typhi, E. coli, and B. subtilis, while 1-[3-(2-methylphenyl)-4-oxo-3H-quinazolin-2-yl]-4-[4-nitrophenyl]-thiosemicarbazide was the most potent against E. coli, B. subtilis, P. aeruginosa, S. typhi, and S. flexneri. These two compounds exhibited the antitubercular activity at the minimum concentration (3 μg/mL) that offered potential for further optimization and development of new antitubercular agents. The obtained results demonstrated promising antimicrobial and antitubercular activities of the synthesized quinazoline compounds which could be used as new scaffolds for improving their antimicrobial activity.

Russian Journal of Bioorganic Chemistry. 2016;42(3):332-339
pages 332-339 views

Letter to the Editor

The interaction of secreted proteins Noggin4 and Wnt8 from Xenopus laevis embryos

Martynova N., Nesterenko A., Orlov E., Eroshkin F., Borodulin A., Bayramov A., Zaraisky A.

Resumo

We demonstrated that the secreted protein Noggin4 from Xenopus laevis was capable of the in vitro binding to the secreted factor Wnt8, one of the ligands of the Wnt/betaCatenin signaling pathway. It was also shown that posttranslational modifications occurring during secretion of these proteins from the embryonic cells were necessary for their effective interaction. Also, we proposed a method for the preparation of physiologically active secreted morphogenic proteins from the intercellular space of the Xenopus laevis embryos.

Russian Journal of Bioorganic Chemistry. 2016;42(3):340-342
pages 340-342 views

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