Hybrid proteins containing proteorhodopsin from Exiguobacterium sibiricum
- Авторлар: Petrovskaya L.1,2, Kryukova E.1,3, Bolshakov V.4, Lukashev E.4, Siletsky S.4, Mamedov M.4, Sudakov R.4, Dolgikh D.1,3,4, Kirpichnikov M.1,4
-
Мекемелер:
- Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, RAS
- Moscow Institute of Physics and Technology
- Emanuel Institute of Biochemical Physics
- Lomonosov Moscow State University
- Шығарылым: Том 50, № 3 (2024)
- Беттер: 301-310
- Бөлім: Articles
- URL: https://journals.rcsi.science/0132-3423/article/view/261482
- DOI: https://doi.org/10.31857/S0132342324030099
- EDN: https://elibrary.ru/NZAHXH
- ID: 261482
Дәйексөз келтіру
Аннотация
The genes of hybrid proteins including Exiguobacterium sibiricum proteorhodopsin (ESR) and various N-terminal soluble domains have been constructed. Effective synthesis in Escherichia coli cells was observed only in the case of hybrids with chaperone Caf1M and maltose-binding protein MBP expressed as precursors with their own signal sequences. The study of the isolated MBP-ESR protein in micelles and proteoliposomes demonstrated formation and decay of the main photocycle intermediates at pH > 8. The photoelectric response of the hybrid proteins Caf-ESR and MBP-ESR is comparable in amplitude to the wild-type ESR response, indicating their homogeneous orientation in the membrane. The obtained constructions can be used to create bacterial expression systems for various retinal proteins, ensuring their uniform incorporation into proteoliposomes.
Толық мәтін
Авторлар туралы
L. Petrovskaya
Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, RAS; Moscow Institute of Physics and Technology
Хат алмасуға жауапты Автор.
Email: lpetr65@yahoo.com
Ресей, ul. Miklukho-Maklaya 16/10, Moscow, 117997; Institutskiy per. 9, Dolgoprudny, Moscow Region, 141701
E. Kryukova
Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, RAS; Emanuel Institute of Biochemical Physics
Email: lpetr65@yahoo.com
Ресей, ul. Miklukho-Maklaya 16/10, Moscow, 117997; ul. Kosygina 4, Moscow, 119334
V. Bolshakov
Lomonosov Moscow State University
Email: lpetr65@yahoo.com
Faculty of Biology
Ресей, Leninskie gory 1/11, Moscow, 119234E. Lukashev
Lomonosov Moscow State University
Email: lpetr65@yahoo.com
Faculty of Biology
Ресей, Leninskie gory 1/11, Moscow, 119234S. Siletsky
Lomonosov Moscow State University
Email: lpetr65@yahoo.com
Belozersky Institute of Physico-Chemical Biology
Ресей, Leninskye gory 1/40, Moscow, 119992M. Mamedov
Lomonosov Moscow State University
Email: lpetr65@yahoo.com
Belozersky Institute of Physico-Chemical Biology
Ресей, Leninskye gory 1/40, Moscow, 119992R. Sudakov
Lomonosov Moscow State University
Email: lpetr65@yahoo.com
Belozersky Institute of Physico-Chemical Biology
Ресей, Leninskye gory 1/40, Moscow, 119992D. Dolgikh
Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, RAS; Emanuel Institute of Biochemical Physics; Lomonosov Moscow State University
Email: lpetr65@yahoo.com
Faculty of Biology, Lomonosov Moscow State University
Ресей, ul. Miklukho-Maklaya 16/10, Moscow, 117997; ul. Kosygina 4, Moscow, 119334; Leninskie gory 1/11, Moscow, 119234M. Kirpichnikov
Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, RAS; Lomonosov Moscow State University
Email: lpetr65@yahoo.com
Faculty of Biology, Lomonosov Moscow State University
Ресей, ul. Miklukho-Maklaya 16/10, Moscow, 117997; Leninskie gory 1/11, Moscow, 119234Әдебиет тізімі
- Govorunova E.G., Sineshchekov O.A., Li H., Spudich J.L. // Annu. Rev. Biochem. 2017. V. 86. P. 845–872. https://doi.org/10.1146/annurev-biochem-101910144233
- Gushchin I., Gordeliy V. // In: Membrane Protein Complexes: Structure and Function. Subcellular Biochemistry. V. 87 / Eds. Harris J., Boekema E. Singapore: Springer Singapore, 2018. P. 19–56. https://doi.org/10.1007/978-981-10-7757-9_2
- Kandori H. // Biophys. Rev. 2020. V. 12. P. 355–361. https://doi.org/10.1007/s12551-020-00645-0
- Brown L.S. // Biochim. Biophys. Acta Biomembr. 2022. V. 1864. P. 183867. https://doi.org/10.1016/j.bbamem.2022.183867
- Lanyi J.K. // Biochim. Biophys. Acta. 2006. V. 1757. P. 1012–1018. https://doi.org/10.1016/j.bbabio.2005.11.003
- Oesterhelt D., Stoeckenius W. // Nature. 1971. V. 233. P. 149–152. https://doi.org/10.1038/newbio233149a0
- Lanyi J.K., Luecke H. // Curr. Opin. Str. Biol. 2001. V. 11. P. 415–419. https://doi.org/10.1016/S0959-440X(00)00226-8
- Ovchinnikov Y.A., Abdulaev N.G., Feigina M.Y., Kiselev A.V., Lobanov N.A. // FEBS Lett. 1979. V. 100. P. 219–224. https://doi.org/10.1016/0014-5793(79)80338-5
- Ovchinnikov Y.A. // Photochem. Photobiol. 1987. V. 45. P. 909–914. https://doi.org/10.1111/j.1751-1097.1987.tb07902.x
- Oesterhelt D., Stoeckenius W. // Proc. Natl. Acad. Sci. USA. 1973. V. 70. P. 2853–2857. https://doi.org/10.1073/pnas.70.10.2853
- Gómez-Consarnau L., Raven J.A., Levine N.M., Cutter L.S., Wang D., Seegers B., Arístegui J., Fuhrman J.A., Gasol J.M., Sañudo-Wilhelmy S.A. // Sci. Adv. 2019. V. 5. P. eaaw8855. https://doi.org/10.1126/sciadv.aaw8855
- DeLong E.F., Beja O. // PLoS Biol. 2010. V. 8. e1000359. https://doi.org/10.1371/journal.pbio.1000359
- Lyukmanova E., Shenkarev Z., Khabibullina N., Kopeina G., Shulepko M., Paramonov A., Mineev K., Tikhonov R., Shingarova L., Petrovskaya L., Dolgikh D., Arseniev A., Kirpichnikov M. // Biochim. Biophys. Acta. 2012. V. 1818. P. 349– 358. https://doi.org/10.1016/j.bbamem.2011.10.020
- Amati A.M., Graf S., Deutschmann S., Dolder N., von Ballmoos C. // Biochem. Soc. Trans. 2020. V. 48. P. 1473–1492. https://doi.org/10.1042/bst20190966
- Racker E., Stoeckenius W. // J. Biol. Chem. 1974. V. 249. P. 662–663. https://doi.org/10.1016/S0021-9258(19)43080-9
- Deisinger B., Nawroth T., Zwicker K., Matuschka S., John G., Zimmer G., Freisleben H.-J. // Eur. J. Biochem. 1993. V. 218. P. 377–383. https://doi.org/10.1111/j.1432-1033.1993.tb18387.x
- Pitard B., Richard P., Duñarach M., Girault G., Rigaiud J.-L. // Eur. J. Biochem. 1996. V. 235. P. 769–778. https://doi.org/10.1111/j.1432-1033.1996.00769.x
- Lee K.Y., Park S.-J., Lee K.A., Kim S.-H., Kim H., Meroz Y., Mahadevan L., Jung K.-H., Ahn T.K., Parker K.K. // Nat. Biotechnol. 2018. V. 36. P. 530–535. https://doi.org/10.1038/nbt.4140
- Choi H.-J., Montemagno C.D. // Nano Lett. 2005. V. 5. P. 2538–2542. https://doi.org/10.1021/nl051896e
- Rigaud J.-L., Pitard B., Levy D. // Biochim. Biophys. Acta. 1995. V. 1231. P. 223–246. https://doi.org/10.1016/0005-2728(95)00091-v
- Shen H. H., Lithgow T., Martin L. // Int. J. Mol. Sci. 2013. V. 14. P. 1589–1607. https://doi.org/10.3390/ijms14011589
- Bogdanov M., Dowhan W., Vitrac H. // Biochim. Biophys. Acta. 2014. V. 1843. P. 1475–1488. https://doi.org/10.1016/j.bbamcr.2013.12.007
- Cymer F., Von Heijne G., White S.H. // J. Mol. Biol. 2015. V. 427. P. 999–1022. https://doi.org/10.1016/j.jmb.2014.09.014
- Huang K.-S., Bayley H., Khorana H.G. // Proc. Nat. Acad. Sci. USA. 1980. V. 77. P. 323–327. https://doi.org/10.1073/pnas.77.1.323
- Dioumaev A.K., Wang J.M., Bálint Z., Váró G., Lanyi J.K. // Biochemistry. 2003. V. 42. P. 6582– 6587. https://doi.org/10.1021/bi034253r
- Seigneuret M., Rigaud J.-L. // FEBS Lett. 1985. V. 188. P. 101–106. https://doi.org/10.1016/0014-5793(85)80883-8
- Seigneuret M., Rigaud J.-L. // FEBS Lett. 1988. V. 228. P. 79–84. https://doi.org/10.1016/0014-5793(88)80589-1
- Tunuguntla R., Bangar M., Kim K., Stroeve P., Ajo-Franklin C.M., Noy A. // Biophys. J. 2013. V. 105. P. 1388–1396. https://doi.org/10.1016/j.bpj.2013.07.043
- Pfleger N., Wörner A.C., Yang J., Shastri S., Hellmich U.A., Aslimovska L., Maier M.S., Glaubitz C. // Biochim. Biophys. Acta. 2009. V. 1787. P. 697–705. https://doi.org/10.1016/j.bbabio.2009.02.022
- Lee H., Kim H. // Biochem. Biophys. Res. Commun. 2014. V. 453. P. 268–276. https://doi.org/10.1016/j.bbrc.2014.05.111
- Ritzmann N., Thoma J., Hirschi S., Kalbermatter D., Fotiadis D., Muller D.J. // Biophys. J. 2017. V. 113. P. 1181–1186. https://doi.org/10.1016/j.bpj.2017.06.022
- Petrovskaya L.E., Lukashev E.P., Chupin V.V., Sychev S.V., Lyukmanova E.N., Kryukova E.A., Ziganshin R.H., Spirina E.V., Rivkina E.M., Khatypov R.A., Erokhina L.G., Gilichinsky D.A., Shuvalov V.A., Kirpichnikov M.P. // FEBS Lett. 2010. V. 584. P. 4193–4196. https://doi.org/10.1016/j.febslet.2010.09.005
- Петровская Л.Е., Балашов С.П., Лукашев Е.П., Имашева Э.С., Гущин И.Ю., Дюмаев А.К., Рубин А.Б., Долгих Д.А., Горделий В.И., Лани Я.К., Кирпичников М.П. // Биохимия. 2015. Т. 80. С. 814–828. [Petrovskaya L., Balashov S., Lukashev E., Imasheva E., Gushchin I.Y., Dioumaev A., Rubin A., Dolgikh D., Gordeliy V., Lanyi J., Kirpichnikov M. // Biochemistry (Moscow). 2015. V. 80. P. 688–700]. https://doi.org/10.1134/S000629791506005X
- Петровская Л.Е., Силецкий С.А., Лукашев Е.П., Балашов С.П., Долгих Д.А., Кирпичников М.П. // Биохимия. 2023. Т. 88. С. 1867–1879. [Petrovskaya L.E., Siletsky S.A., Mamedov M.D., Lukashev E.P., Balashov S.P., Dolgikh D.A., Kirpichnikov M.P. // Biochemistry (Moscow). 2023. V. 88. P. 1544–1554]. https://doi.org/10.1134/s0006297923100103
- Balashov S.P., Petrovskaya L.E., Imasheva E.S., Lukashev E.P., Dioumaev A.K., Wang J.M., Sychev S.V., Dolgikh D.A., Rubin A.B., Kirpichnikov M.P., Lanyi J.K. // J. Biol. Chem. 2013. V. 288. P. 21254–21265. https://doi.org/10.1074/jbc.M113.465138
- Siletsky S.A., Mamedov M.D., Lukashev E.P., Balashov S.P., Dolgikh D.A., Rubin A.B., Kirpichnikov M.P., Petrovskaya L.E. // Biochim. Biophys. Acta Bioenerg. 2019. V. 1860. P. 1–11. https://doi.org/10.1016/j.bbabio.2018.09.365
- Petrovskaya L.E., Lukashev E.P., Mamedov M.D., Kryukova E.A., Balashov S.P., Dolgikh D.A., Rubin A.B., Kirpichnikov M.P., Siletsky S.A. // Int. J. Mol. Sci. 2023. V. 24. P. 7369. https://doi.org/10.3390/ijms24087369
- Петровская Л.Е., Шульга А.А., Бочарова О.В., Ермолюк Я.С., Крюкова Е.А., Чупин В.В., Бломмерс М.Ж.Ж., Арсеньев А.С., Кирпичников М.П. // Биохимия. 2010. Т. 75. C. 1001–1013. [Petrovskaya L., Shulga A., Bocharova O., Ermolyuk Y.S., Kryukova E., Chupin V., Blommers M., Arseniev A., Kirpichnikov M. // Biochemistry (Moscow). 2010. V. 75. P. 881–891]. https://doi.org/10.1134/S0006297910070102
- Ishihara G., Goto M., Saeki M., Ito K., Hori T., Kigawa T., Shirouzu M., Yokoyama S. // Prot. Expr. Purif. 2005. V. 41. P. 27–37. https://doi.org/10.1016/j.pep.2005.01.013
- Chen G.Q., Gouaux J.E. // Prot. Sci. 1996. V. 5. P. 456–467. https://doi.org/10.1002/pro.5560050307
- Lyukmanova E., Shenkarev Z., Khabibullina N., Kulbatskiy D., Shulepko M., Petrovskaya L., Arseniev A., Dolgikh D., Kirpichnikov M. // Aсt. Nat. 2012. V. 4. P. 58–64. https://doi.org/10.32607/20758251-2012-4-4-58-64
- Raran-Kurussi S., Waugh D.S. // PLoS One. 2012. V. 7. e49589. https://doi.org/10.1371/journal.pone.0049589
- Kapust R.B., Waugh D.S. // Prot. Sci. 1999. V. 8. P. 1668–1674. https://doi.org/10.1110/ps.8.8.1668
- Yeliseev A., Zoubak L., Gawrisch K. // Prot. Expr. Purif. 2007. V. 53. P. 153–163. https://doi.org/10.1016/j.pep.2006.12.003
- Weiß H.M., Grisshammer R. // Eur. J. Biochem. 2002. V. 269. P. 82–92. https://doi.org/10.1046/j.0014-2956.2002.02618.x
- Hu J., Qin H., Gao F.P., Cross T.A. // Prot. Expr. Purif. 2011. V. 80. P. 34–40. https://doi.org/10.1016/j.pep.2011.06.001
- Gubellini F., Verdon G., Karpowich N.K., Luff J.D., Boel G., Gauthier N., Handelman S.K., Ades S.E., Hunt J.F. // Mol. Cell. Proteom. 2011. V. 10. P. 930. https://doi.org/10.1074/mcp.M111.007930
- Xu L.Y., Link A.J. // Biotechnol. Lett. 2009. V. 31. P. 1775–1782. https://doi.org/10.1007/s10529-009-0075-5
- Petrovskaya L.E., Ziganshin R.H., Kryukova E.A., Zlobinov A.V., Gapizov S.S., Shingarova L.N., Mironov V.A., Lomakina G.Y., Dolgikh D.A., Kirpichnikov M.P. // Appl. Biochem. Biotechnol. 2021. V. 193. P. 3672–3703. https://doi.org/10.1007/s12010-021-03634-5
- Balashov S.P., Petrovskaya L.E., Lukashev E.P., Imasheva E.S., Dioumaev A.K., Wang J.M., Sychev S.V., Dolgikh D.A., Rubin A.B., Kirpichnikov M.P., Lanyi J.K. // Biochemistry. 2012. V. 51. P. 5748–5762. https://doi.org/10.1021/bi300409m
- Siletsky S.A., Mamedov M.D., Lukashev E.P., Balashov S.P., Petrovskaya L.E. // Biophys. Rev. 2022. V. 14. P. 771–778. https://doi.org/10.1007/s12551-022-00986-y
- Drachev L.A., Jasaitis A.A., Kaulen A.D., Kondrashin A.A., Liberman E.A., Nemecek I.B., Ostroumov S.A., Semenov A.Y., Skulachev V.P. // Nature. 1974. V. 249. P. 321–324. https://doi.org/10.1038/249321a0
- Siletsky S.A., Mamedov M.D., Lukashev E.P., Balashov S.P., Dolgikh D.A., Rubin A.B., Kirpichnikov M.P., Petrovskaya L.E. // Biochim. Biophys. Acta. 2016. V. 1857. P. 1741–1750. https://doi.org/10.1016/j.bbabio.2016.08.004
- Petrovskaya L., Gapizov S. S., Shingarova L., Kryukova E., Boldyreva E., Yakimov S., Svirschevskaya E., Lukashev E., Dolgikh D., Kirpichnikov M. // Russ. J. Bioorg. Chem. 2014. V. 40. P. 375–382. https://doi.org/10.1134/S1068162014030121
- Siletsky S.A., Lukashev E.P., Mamedov M.D., Borisov V.B., Balashov S.P., Dolgikh D.A., Rubin A.B., Kirpichnikov M.P., Petrovskaya L.E. // Biochim. Biophys. Acta Bioenerg. 2021. V. 1862. P. 148328. https://doi.org/10.1016/j.bbabio.2020.148328