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Том 53, № 5 (2019)

Article

Potential Involvement of KIN10 and KIN11 Catalytic Subunits of the SnRK1 Protein Kinase Complexes in the Regulation of Arabidopsis γ-Tubulin

Yemets A., Krasnoperova E., Goriunova I., Isayenkov S., Karpov P., Blume Y.

Аннотация

SnRK1 protein kinases are integral components of cell signaling involved in stress response, regulation of energy metabolism, seed germination and maturation, autophagy, and other processes. Nevertheless, many functions of these protein kinases remain unknown. In order to study the intracellular localization of KIN10 (catalytic subunit of the SnRK1 protein kinase complexes), protoplasts of the wild A. thaliana ecotype (Col-0) were transformed with a construct that included the KIN10-RFP fusion gene. It was established that the chimeric KIN10-RFP protein was diffusely distributed in the cytoplasm; however, it was mainly localized on the cell periphery, in the region adjacent to the plasma membrane. The diffuse distribution of KIN10 and γ-tubulin in the cytoplasm of A. thaliana root cells was demonstrated by immunofluorescence microscopy. The patterns of γ-tubulin intracellular localization in the root cells of the kin10 and kin11 knockout mutants and wild type A. thaliana were shown to be different. The intensity of γ-tubulin fluorescence in both mutants was lower than in the wild type-plants: this may be indicative of certain impairments in the formation of γ-tubulin complexes in the mutants. A lower intensity of γ-tubulin fluorescence was also recorded in cells of all lines cultivated under the conditions of energy shortage. In particular, the lowest level of fluorescence was recorded in the kin10 and kin11 mutants exposed to this type of stress, and this may be indicative of the synergistic influence of simultaneous dysfunction of one of these genes and energy deficiency on the formation of γ-tubulin complexes (γTuSC and γTuRC). The results obtained demonstrate the possible involvement of SnRK1 (KIN10 and KIN11) in the physiological response of plants to energy stress. With the data on the possible phosphorylation of the Ser131 residue in plant γ-tubulin by KIN10 taken into account, it can be assumed that SnRK1 protein kinases are involved in the regulation of microtubule polymerization in plants.

Cytology and Genetics. 2019;53(5):349-356
pages 349-356 views

Zygotic Autopolyploidization of Rye (Secale cereale L.)

Gordej I., Lyusikov O., Gordej I.

Аннотация

The paper presents the results of zygotic autopolyploidization by the nitrous oxide (N2O) of diploid cultivars and F1 hybrids of winter rye. It has been shown that the method of creating zygotic rye tetraploids by the nitrous oxide (N2O) is effective and allows obtaining up to 86.0% of tetraploids. The average yield of tetraploids was 51.0%. Nine new rye tetraploids were created with this method. The created tetraploids are characterized by chromosomal balance and low levels of aneuploidy (up to 9.7%). Meiosis in rye zygotic tetraploids occurs with significantly more defections (P ≤ 0.05) than in the original diploids. It has been established that part of the nuclear DNA is eliminated in the created tetraploids to the C6–C7 generations. On the basis of the obtained tetraploid Yubileinaya, a new variety of winter tetraploid rye Camea 16 was created.

Cytology and Genetics. 2019;53(5):357-362
pages 357-362 views

Allelic Polymorphism of the ATM Gene and Its Contribution to the Formation of Resistance to the Impacts of Unfavorable Occupational Factors

Andrushchenko T., Goncharov S., Dosenko V.

Аннотация

Maintaining DNA integrity is an indispensable condition for normal cell functioning. The role of DNA repair gene polymorphism in the formation of individual genome sensitivity to mutagenic DNA-damaging effects is now being actively studied. The aim of this research was to study the frequency distribution of the ataxia telangiectasia-mutated (ATM (rs664677)) genotypes among workers of hazardous and unsafe industries in order to identify risk markers for developing bronchopulmonary pathology. The study included miners and workers of asbestos-cement plants (n = 214). The genotypes of ATM (rs664677) were identified using the real-time PCR method. The study has found that the ATMT/T genotype is associated with the risk of developing bronchopulmonary pathology in professional groups of workers from asbestos-cement plants (P = 0.02, χ2 = 4.98; OR = 3.47; 95% CI: 1.01–12.51) and miners (OR = 1.97; 95% CI: 070–5.53). The genotypes that exhibited resistance to the development of pathology in the respiratory system have also been identified: in the group of workers from asbestos-cement plants (ATMA/A (OR = 0.84; 95% CI: 0.45–1.58), ATMA/T (OR = 0.73; 95% CI: 0.41–1.33)) and in miners (ATMA/T (OR = 0.63; (0.28–1.43)). The obtained results indicated, for the first time, the significance of the ATM (rs664677) gene polymorphism for the development of bronchopulmonary pathology in workers of hazardous and unsafe industries of Ukraine.

Cytology and Genetics. 2019;53(5):363-366
pages 363-366 views

Expression Levels of Genes Ptgs2 and Tgfb1 in Esophageal Burns and When Introducing Melanin

Chornenka N., Raetska Y., Dranitsina A., Kalmikova O., Dzerginskiy N., Savchuk O., Ostapchenko L.

Аннотация

In this histological study, the degree of esophageal burn was confirmed and the effect of melanin on healing processes, namely, faster periods of recovery of damaged esophageal tissues, was assessed. Higher expression of genes Ptgs2 and Tgfb1 involved in the development of inflammation in blood and esophageal mucosa under conditions of second-degree alkali esophageal burn (AEB 2) was shown. After administration of melanin, the expression levels of genes Ptgs2 and Tgfb1 in blood and esophageal tissues decreased compared to those in the AEB 2 group. It was found that the content of proinflammatory (IL-1β, TNF-α) cytokines in blood and esophageal tissues increased in AEB 2. After administration of melanin, the content of proinflammatory cytokines decreased compared to those of the AEB 2 group. The obtained results demonstrated the anti-inflammatory properties of this compound, showing the prospect of using melanin as a substance contributing to chemical esophageal burn healing.

Cytology and Genetics. 2019;53(5):367-374
pages 367-374 views

Constitutional and Induced Accumulation of Callose and Phenol Compounds as Elements of Systemic Resistance in Winter Wheat Sprouts

Boboshko O., Emelyanov V., Panyuta O., Taran N.

Аннотация

The amounts of accumulated callose and phenol compounds in sprouts of two winter wheat cultivars under inoculation with pathogenic fungus Pseudocercosporella herpotrichoides, the causing agent of wheat eyespot, were determined. Considerable differences were demonstrated in the constitutional and induced accumulation of phytoimmunity substances by the sprouts of the Myronivska 808 and Renan cultivars, which cause specific features of their resistance to pathogenic microorganisms.

Cytology and Genetics. 2019;53(5):375-383
pages 375-383 views

IRAP Analysis of Transgenic Wheat Plants with a Double-Stranded RNA Suppressor of the Proline Dehydrogenase Gene

Morgun B., Dubrovna O.

Аннотация

The polymorphism level of DNA regions flanked by inverted LTR retrotransposon repeats has been analyzed by the IRAP method in genetically modified wheat plants that contained a double-stranded RNA suppressor of the proline dehydrogenase gene and that had been obtained by Agrobacterium-mediated transformation in an in vitro culture. No DNA polymorphism was detected in the transgenic plants when highly efficient primers for Sukkula, Sabrina, Wham, Nikita, and Wilma1 retrotransposons were used. We did not register the disappearance of amplicons in the DNA profiles of PCR in the experiment, and this may be indicative of the absence of rearrangements in the primer annealing sites and in the loci studied. The emergence of new amplicons was not observed in the spectra of DNA amplification products, which is indicative of the absence of activation of the transposon activity of mobile genetic elements in transgenic plants with a double-stranded RNA suppressor of the proline dehydrogenase gene. To expand the spectrum of amplicons in PCR products of the samples studied, we tested a method that involved the combined use of IRAP primers for different retrotransposons in a single reaction. IRAP primer pairs were selected experimentally, but the use of this method did not reveal the disappearance or emergence of polymorphic fragments. The absence of DNA polymorphism in transgenic plants with a double-stranded RNA suppressor of the proline dehydrogenase gene may be due to the phenomenon of RNA interference that suppresses retrotransposon activity.

Cytology and Genetics. 2019;53(5):384-391
pages 384-391 views

Gasotransmitters and Their Role in Adaptive Reactions of Plant Cells

Kolupaev Y., Karpets Y., Beschasniy S., Dmitriev A.

Аннотация

The review is devoted to the physiological functions of the main gasotransmitters (GT) in plants. The pathways for synthesis of nitric oxide, hydrogen sulphide, and carbon monoxide are characterized. Their interplay (cross-talk) with other key participants of signaling—calcium ions and reactive oxygen species—was shown. The main pathways for modification of target proteins by GT—S-nitrosylation, nitridation, and persulphidation—were considered. Special attention was paid to the mechanisms of functional interplay of GT among themselves caused by the direct chemical interaction, competition for targets of biomacromolecules, and reciprocal influence on synthesis. The participation of endogenous GT in the processes of plants’ adaptation to the influence of the main abiotic stressors—low and high temperatures, dehydration, and salinity—was described. The examples for practical use of GT donors for the induction of plants’ resistance to the abiotic stresses were provided.

Cytology and Genetics. 2019;53(5):392-406
pages 392-406 views

“Double Punch”: Hepatitis C in Patients with Genetic Defects of Iron Metabolism

Danilenko N., Siniauskaya M., Lukashyk S., Karpov I., Davydenko O.

Аннотация

The review is focused on the development of chronic viral hepatitis C in patients with a genetic defect in the hereditary hemochromatosis (HFE) gene that controls iron metabolism. The effect of HFE gene mutations on the patient’s susceptibility to viral attack, the development of pathological processes in the liver, including the most severe complications, such as liver cirrhosis and hepatocellular carcinoma in chronic viral hepatitis C, and responsiveness of patients carrying the mutations to the treatment of viral hepatitis C are discussed.

Cytology and Genetics. 2019;53(5):407-417
pages 407-417 views

Characterization of the Complete Chloroplast Genome of an Endemic Perennial Grass Orinus intermedius and Its Phylogenetic Analysis in Poaceae

Su X., Liu Y., Lv T., Ren Z.

Аннотация

Orinus intermedius is an endemic perennial species occurring exclusively in the southeastern Qinghai-Tibet Plateau (QTP). It has particularly important ecological and genetic values, and some of its morphological characters are between O. thoroldii and O. kokonoricus. In the present study, we conducted the sequencing and assembly of its complete chloroplast (cp) genome using Illumina HiSeq4000 platform in order to discuss its characterization and phylogenetic position of this species. The results showed that the complete cp genome of O. intermedius is 134 296 bp in size with a high AT content of 61.6%. The cp genome structure are standard quadripartite, which contains a pair of an inverted repeat (IRs, 21 024 bp each) separated by the small single copy (SSC, 12 478 bp) and large single copy (LSC, 79 770 bp) regions. It encodes 136 genes, including 81 protein-coding genes, 44 tRNAs genes and eight rRNAs genes. Most of these genes occur as a single copy. Moreover, there are no genes harbored introns among the annotated genes from the cp genome of O. intermedius. Phylogenetic analysis based on 41 complete cp genome sequences indicated that O. intermedius is sister clade to the clade of Eragrostis species in Chloridoideae.

Cytology and Genetics. 2019;53(5):418-423
pages 418-423 views

The P268S and M863V Polymorphisms of the NOD2/CARD15 Gene in Crohn’s Disease and Ulcerative Colitis

Diler S., Polat F., Yaraş S.

Аннотация

We aimed to determine P268S and M863V polymorphisms in NOD2/CARD15 genes associated with an increased risk of developing Crohn’s disease (CD) and ulcerative colitis (UC) and to establish correlations between P268S and M863V genotypes in Turkish population. This study included 152 healthy controls and 138 patients (62 CD and 76 UC) with IBD. Our results, the P268S CC genotype was prevalent on patients and controls (45 vs. 66%), followed by genotypes CT (48 vs. 28%) and TT (7 vs. 6%) in CD. The prevalence of genotypes of CC (wild-type), CT (heterozygous mutant) and TT (homozygous mutant) profiles for the P268S polymorphism were 68, 25 and 7% respectively in UC patients, and 66, 28 and 6% respectively in healthy control groups. We were found in wild-type M863V in all subjects and no other mutant band. P268S polymorphism may be associated with CD susceptibility in Turkish population, whereas there is not associated between M863V polymorphisms and patients with IBD in Turkish population.

Cytology and Genetics. 2019;53(5):424-429
pages 424-429 views

The Expression of Glypican-3 in Colorectal Cancer

Azizpour S., Ezati R., Saidijam M., Razavi A., Jalilian F., Mahdavinezhad A., Eslami H., Soltanian A., Mohammadpour H., Kamali F., Amini R.

Аннотация

Abstract—Glypican-3 (GPC3), a heparan sulfate proteoglycan is an emerging tumor marker; its overexpression has been stated in several types of cancer such as hepatocellular carcinoma (HCC), melanoma and etc. In this study, the expression of the GPC3 mRNA was investigated in 61 human colorectal cancer (CRC) tissues and 61 normal adjacent tissues, using the real-time PCR assay. Using immunohistochemistry (IHC), the expression of the GPC3 protein was examined in the cases that showed a marked elevation in the expression of the GPC3 mRNA in the tumor tissues, compared to the normal tissues. A significant increase in the expression of the GPC3 gene was revealed in 49.2% of the cases of CRC tumors, compared to the normal adjacent tissues. The expression of the GPC3 mRNA was found to significantly correlate with the pathological differentiation and the age of the patients. Interestingly, a significant reduction in the expression of the GPC3 mRNA was found in the tumor tissues of the 16 patients, who underwent the neoadjuvant chemotherapy, compared to the normal adjacent tissues. Unexpectedly, the GPC3 protein was not detected by IHC in 30 tissues, exhibiting the upregulation in the expression of the GPC3 mRNA. Our results indicated that GPC3 could be expressed in the CRC tissues at the mRNA level, while its expression could not be found at the protein level.

Cytology and Genetics. 2019;53(5):430-440
pages 430-440 views

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