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Vol 54, No 7 (2018)

Producers, Biology, Selection, and Gene Engineering

Screening and Taxonomic Characterization of Xylanase Bacterial Producers

Kalinina A.N., Borshchevskaya L.N., Gordeeva T.L., Sineoky S.P.

Abstract

A stepwise screening of bacterial xylanase producers isolated from forest soil in Moscow oblast has been performed, and the taxa of the microorganisms have been identified based on an analysis of the 16S RNA gene sequences. An approach to the selection of the most active producers is suggested, and this selection has been carried out, resulting in four producing strains. Interestingly, the species of two of the selected strains (Paenibacillus jamilae and P. brasilensis) are described as producers of xylanolytic enzymes for the first time, and the characteristics of those xylanases have not yet been studied. The new strains can serve as a source of genes for the construction of high-efficient xylanase producers.

Applied Biochemistry and Microbiology. 2018;54(7):713-716
pages 713-716 views

Express Method for the Identification of Industrially Valuable Yeast

Borshchevskaya L.N., Gordeeva T.L., Kalinina A.N., Sineoky S.P.

Abstract

A method is proposed for the rapid identification of the taxa of five industrially valuable yeast groups: Pichia pastoris, Yarrowia lipolytica, Schizosaccharomyces pombe, Saccharomyces cerevisiae, and Kluyveromyces lactis. The specific primers selected based on nucleotide sequences of genes encoding rRNA were used in PCR. The method was effective in the identification of either pure yeast cultures or a mixture of deposited yeast strain cultures. Thus, this method was shown to be potentially viable for the identification of the studied yeasts in microbial preparations at the stages of the construction of producing strains and in industrial fermentations.

Applied Biochemistry and Microbiology. 2018;54(7):717-722
pages 717-722 views

Phylogenetic Analysis of Pectinases from Ascomycetous Yeasts

Shalamitskii M.Y., Naumov G.I.

Abstract

The paper reports on the search for the superfamily of divergent species-specific PGU genes in ascomycetous yeasts in the GenBank (http://www.ncbi.nlm.nih.gov/genbank/) and the Sanger Institute (http://www.sanger.ac.uk) databases. It has been demonstrated that the species within the Eremothecium, Galactomyces, Geotrichum, Kluyveromyces, and Lachancea genera contain divergent pectinase genes. Within these genera, we observed the following levels of similarity between the nucleotide sequences of the PGU genes: 64.5–98.2% in Kluyveromyces, 72.7–81.3% in Galactomyces/Geotrichum, and 69–87.9% in Eremothecium. Polymeric PGU genes capable of interspecies transfer were found in Galactomyces citri-aurantii, Geotrichum klebahnii, and Galactomyces candidus. The importance of PGU genes for the diagnosis and selection of yeasts is discussed.

Applied Biochemistry and Microbiology. 2018;54(7):723-729
pages 723-729 views

Gene Expression of the Antimicrobial Peptide Bombinin Increases the Resistance of Transgenic Tobacco Plants to Phytopathogens

Zakharchenko N.S., Pigoleva S.V., Furs O.V., Shevchuk T.V., Dyachenko O.V., Buryanov Y.I.

Abstract

Transgenic tobacco (Nicotiana tabacum L.) plants with an artificial gene from the antimicrobial peptide bombinin (bom) have been obtained and studied. The presence of the bom gene in the genome of kanamycin-resistant plants was shown by PCR. Expression of the bom gene was confirmed by antimicrobial activity measurements in leaf extracts. The obtained plants were morphogenetically resistant to Erwinia carotovora bacteria and Rhizoctonia solani fungi phytopathogens. In addition, the protective oxidative reaction to the infection, i.e., the SOD activity and proline content, were lower in transgenic plants than in the infected nontransgenic plants. Plants with the expression of the antimicrobial bombinin peptide gene are promising for use in agricultural biotechnology as plant protectors.

Applied Biochemistry and Microbiology. 2018;54(7):730-735
pages 730-735 views

Biological Preparation Technology

Yeast Debaryomyces hansenii within ORMOSIL Shells as a Heterogeneous Biocatalyst

Ponamoreva O.N., Afonina E.L., Kamanina O.A., Lavrova D.G., Arlyapov V.A., Alferov V.A., Boronin A.M.

Abstract

The relevant sol-gel encapsulation methods to design ORMOSIL (organically modified silica) protective shells around Debaryomyces hansenii yeast cells have been studied. Encapsulation is based on spontaneous “cell-in-shell” 3D structures. The physiological activity of the sol-gel encapsulated cells was determined by measurement of the oxidative activity of a BOD biosensor containing ORMOSIL-encapsulated cells. It was shown that the shells around the microbial cells did not prevent substrate diffusion and had excellent protection from extreme environmental factors (heavy metal ions, high pH, and UV radiation). In addition, it was found that the BOD biosensor surpasses some other known biosensors in their basic characteristics, including sensitivity, stability, and reproducibility. These results are important for the development of innovative methods of cell encapsulation and the creation of biocatalysts used in biotechnology and ecology.

Applied Biochemistry and Microbiology. 2018;54(7):736-742
pages 736-742 views

Use of Biologics

Effect of Antigens Obtained from the Recombinant Strain Bacillus anthracis 55ΔTPA-1Spo on Organs and Tissues of Immunized Animals

Mikshis N.I., Popova P.Y., Semakova A.P., Kudryavtseva O.M., Bugorkova S.A., Kravtsov A.L.

Abstract

The recombinant B. anthracis strain 55ΔTPA-1Spo was used for the development and trial of a method for the simultaneous production of immunogenic anthrax antigens, a protective antigen, and the EA1 protein of the S layer, which are components of a prototype anthrax vaccine. The proposed method includes inoculum preparation, cultivation in liquid medium without antibiotics, sterilizing filtration, concentration, diafiltration, and chromatographic purification on various carriers. This method provides for a high yield of both target products. The purified antigens (alone or in combination with each other) were shown to have no toxic effect on organs and tissues of vaccinated laboratory animals in amounts that were several times higher than immunizing doses. The minor changes revealed by histological examination reflect the adaptation-compensatory reactions of the macroorganism and tend to normalize. The response of immune-competent organs corresponded to moderate development of immunogenesis. The addition of EA1 protein to the recombinant protective antigen resulted in an increase in the expression of the genes determining TLR of innate immunity. Immunization of laboratory animals with the combined preparation caused more pronounced immunobiological alterations in lymphoid organs than the use of only the protective antigen.

Applied Biochemistry and Microbiology. 2018;54(7):743-755
pages 743-755 views

Metrology, Standardization, and Control

Generation and Characterization of the Monoclonal Antibody Panel Specific to the NS1 Protein of the Influenza A Virus

Krivitskaya V.Z., Konovalova N.I., Petrova E.R., Petrov S.V., Shaldzhyan A.A., Romanovskaya-Roman’ko E.A., Kadyrova R.A., Sergeeva M.V., Tsareva T.R., Sorokin E.V., Petrova P.A.

Abstract

The paper reports on the production of a panel of seven new monoclonal antibodies (MAbs) capable of specifically binding to the NS11–124 fragment of the influenza virus A/Puerto Rico/8/1934 (H1N1) NS1 protein in indirect enzyme-linked immunosorbent assay (ELISA), as well as to the full-size native NS1 protein in cells infected with different subtypes of the influenza A virus (A(H1N1), A(H1N1)pdm09, A(H2N2), A(H3N2), and A(H9N2)). A sensitive variant of the microcultural ELISA based on the use of the generated MAbs is proposed; it may be utilized to detect NS1 protein in infected cells and to study its antigenic variability. The results of the performed microcultural ELISA demonstrate type- and subtype-specific antigenic variability of the influenza virus NS1 protein.

Applied Biochemistry and Microbiology. 2018;54(7):756-765
pages 756-765 views