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Том 45, № 1 (2019)

Review Article

The Diverse Roles of Spliceosomal Proteins in the Regulation of Cell Processes

Anufrieva K., Shender V., Arapidi G., Lagarkova M., Govorun V.

Аннотация

The spliceosome is necessary for the removal of intron sequences in transcribed pre-mRNA in eukaryotic cells. More than 200 proteins are involved in the process of pre-mRNA splicing; they coordinate the alternative splicing of most eukaryotic genes, which participate in the regulation of a variety of important cellular processes. However, a growing number of studies demonstrate the functions of spliceosomal proteins that are not directly related to the splicing process, such as (1) R-loop formation, (2) DNA repair, (3) telomere elongation, (4) M phase regulation, and (5) mRNA export from the nucleus. In this review, we summarize the data on the noncanonical functions of the spliceosomal proteins. Taking into account the fact that mutations in spliceosomal genes are commonly found in tumor cells, a careful study of noncanonical functions of spliceosomal proteins may provide new insights into the development of effective methods of cancer treatment and design of drugs for delaying cell aging.

Russian Journal of Bioorganic Chemistry. 2019;45(1):1-8
pages 1-8 views

Article

Mass Spectrometric Amino Acid Sequencing of Short and Mid-Sized Peptides in a ESI-o-TOF System as an Alternative to MS/MS. II: Selective Fragmentation of Dansylated Peptides with Predominant Formation of b-Ions

Nazimov I., Bublyaev R.

Аннотация

A scheme for analyzing the mass spectra of fragmented peptides, including chemical modification of the N-terminal amino group of the peptide by 5-(N,N-dimethylamino)naphthalene-1-sulfonyl chloride followed by ionization of the dansylated peptide by electrospray and its fragmentation at the low vacuum zone of the sample solution input unit into the mass spectrometer (ESI-o-TOF scheme), has been proposed. It is shown that the resulting ions are fragmented with the predominant formation of b-ions bearing a Dns-group. In this way, it is possible to obtain high-intensity b-ions (peak/noise intensity ratio of 10/1 to 100/1), including b1 and b2 ions that are especially valuable for determining the structure. In combination with the previously proposed method of obtaining informative y-ions, this approach allows one to reliably determine the complete amino acid sequence of peptides containing up to 10 amino acid residues, without using computer programs for analyzing the fragment composition of peptides.

Russian Journal of Bioorganic Chemistry. 2019;45(1):9-17
pages 9-17 views

Optimization of the Synthesis of an Apelin-12 Structural Analog and the NMR Study of Its Stability in Human Plasma

Sidorova M., Palkeeva M., Azmuko A., Ovchinnikov M., Molokoedov A., Bushuev V., Pisarenko O.

Аннотация

A method for the solid-phase synthesis of the apelin-12 analog has been developed using the Fmoc methodology in combination with the temporary protection of the guanidine function of the arginine residues by protonation (salt formation) during the formation of the amide bond. Proton magnetic resonance spectroscopy has been used to compare the proteolytic stability of apelin-12 and its structural analog in human blood plasma. The half-life of the analog in plasma has been shown to be about three times longer than that of the natural peptide.

Russian Journal of Bioorganic Chemistry. 2019;45(1):18-26
pages 18-26 views

Detection of Divinyl Ether Synthase Activity and a Novel Oxylipin (1'Z)–Colneleic Acid in Asparagus (Asparagus officinalis L.)

Ogorodnikova A., Mukhitova F., Chechetkin I., Khairutdinov B., Grechkin A.

Аннотация

The activity of divinyl ether synthase (EC: 4.2.1.121), an enzyme involved in the lipoxygenase cascade of unsaturated fatty acids in plants, has been found in the roots and stalks of asparagus Asparagus officinalis L. Incubation of homogenates of roots and/or etiolated stalks of Asparagus officinalis L. with linoleic acid results in the formation of mainly divinyl ether (9Z,11Z,1'E)-12-(1'-hexenyloxy)-9,11-dodecadienoic acid ((11Z)-etheroleic acid), as well as a minor amount of its geometric isomer (9Z,11E,1'E)-12-(1'-hexenyloxy)-9,11-dodecadienoic acid (etheroleic acid). These compounds are derived from linoleic acid by the sequential action of regiospecific 13-lipoxygenase and divinyl ether synthase. Moreover, a minor compound, whose amount increases after the incubation of homogenates with the 9-hydroperoxide of linoleic acid ((9S,10E,12Z)-9-hydroperoxy(10,12)–octadecadienoic acid), has been found. This compound has been identified as (8E,1'Z,3'Z)-9-(1',3'-nonadienyloxy)-8-nonenoic acid ((1'Z)-colneleic acid). These data suggest that nonphotosynthetic tissues of asparagus exhibit the activity of a novel 13/9-specific divinyl ether synthase.

Russian Journal of Bioorganic Chemistry. 2019;45(1):27-33
pages 27-33 views

Initiated Oxidation of Phosphatidylcholine Liposomes with Some Functional Nutraceuticals

Sazhina N., Antipova A., Semenova M., Palmina N.

Аннотация

Design and research of liposome structures on the basis of soy phosphatidylcholine (PC) as nanocontainers for delivery of various functional nutraceuticals in tissues and cells of organisms, as well as models for studying biochemical processes in cell membranes, has been of undoubted interest recently. As liposomes are oxidized and destroyed under the influence of light and high temperatures, there are various ways to protect them. In the present work, the effect of temperature on the soy PC liposome oxidation initiated by a water-soluble azo-initiator AAPH was investigated; also the influence of ω-3 α-linolenic fatty acid (ALA) supplement in the liposomes on the process was studied. Inhibition of liposome oxidation by essential oil of clove buds (EOC) (Eugenia caryophyllata Thumb) or liposome encapsulation in sodium caseinate was studied. The possibility to efficiently inhibit oxidation of PC liposomes at T = 37°C by phenolic compounds (eugenol) of EOC was demonstrated; however, at an elevated temperature (60°C) the oxidation rate increased 3–4 times and the rate of inhibition of conjugated diene formation significantly decreased. Addition of ALA to liposomes led to considerable intensification of oxidation. Encapsulation of liposomes in sodium caseinate reduced liposome oxidation by 70%, and the combined effect of sodium caseinate encapsulation and EOC, by 90%. With a temperature increase, the effectiveness of protection by the caseinate envelope significantly decreased, even in the presence of clove oil.

Russian Journal of Bioorganic Chemistry. 2019;45(1):34-41
pages 34-41 views

Synthesis and In Vitro Antitumor Activity of Novel Chromenones Bearing Benzothiazole Moiety

Eman A. El-Helw ., Derbala H., El-Shahawi M., Salem M., Ali M.

Аннотация

6-(Benzo[d]thiazol-2-yl)-4-oxo-(4H)-chromene-3-carbaldehyde was utilized to construct a novel series of fused chromone bearing benzothiazole moiety, namely chromeno[2,3-b]azetol, benzo[c]chromene, and chromeno[2,3-c]pyrazole derivatives, as well as, non-fused chromones, such as thiazolidinone, pyrazolone, and pyridine derivatives. The in vitro antitumor activities of the synthesized products against six cancer cell lines, including A594, HCT-116, MCF-7, HepPG2, PC3, and HFB4, were evaluated. Some compounds exhibited significant anticancer activities against both lung and colon cancer cells very close to that of a standard drug doxorubicin.

Russian Journal of Bioorganic Chemistry. 2019;45(1):42-53
pages 42-53 views

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