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Vol 45, No 4 (2019)

Review Article

Immune Checkpoints of the B7 Family. Part 1. General Characteristics and First Representatives: B7-1, B7-2, B7-H1, B7-H2, and B7-DC

Chapoval A.I., Chapoval S.P., Shcherbakova N.S., Shcherbakov D.N.

Abstract

T-cell response along with humoral response compose the basis of acquired immunity. Effective activation of T lymphocytes requires at least two signals. The first signal is provided by the interaction of T-cell receptor with antigenic peptide in the context of major histocompatibility complex molecules (I or II class). The second signal required for T cell activation, proliferation and differentiation is delivered by molecules called “immune checkpoints” which determine the polarity, effectiveness and termination of the immune response. The immune checkpoint group consist of around 70 members. The first discovered molecules that control immune response belong to the B7 family of cell membrane proteins. The classical two-signal model for T cell activation was developed with their implication. Immune checkpoints have gained popularity after successful clinical trials of antibodies blocking CTLA-4 and PD-1 receptors (immune checkpoint inhibitors), in which the tremendous antitumor effects were demonstrated. Considering the importance of the immune checkpoints in therapeutic regulation of antitumor immunity, in this review we describe the functional properties of all known today molecules of the B7 family. The first part of our review discusses the structural features, functions and therapeutic applications of B7-1, B7-2, B7-H1, B7-H2, B7-DC, and their receptors.

Russian Journal of Bioorganic Chemistry. 2019;45(4):225-240
pages 225-240 views

Article

The Synthesis and Biological Activity of 3,3'-Dimethyl-L-Selenocystine, a New Selenocystine Derivative

Poluboyarinov P.A., Golubkina N.A., Aniskov A.A., Moiseeva I.J., Glebova N.N., Shvets V.I.

Abstract

Using the known synthesis of L-selenocystine,3,3'-diseleno-bis (2-aminopropionic acid), from β‑chloroalanine, a structural analog of natural sulfur-containing amino acids capable of accumulating selenium in the body, we synthesized a new selenium-containing amino acid 3,3'-dimethyl-L-selenocystine () from α-amino-β-chlorobutyric acid. It was shown that, similarly to the selenium released from natural L-selenocystine, the selenium from 3,3'-dimethyl-L-selenocystine accumulated in rat liver, muscles, and serum, where its concentration exceeded that of the control by 40.63, 14.07 and 22.98%, respectively. A close degree of selenium accumulation in the tissues implied a similar metabolic pathway of the amino acids and biological availability of the trace element from the synthesized amino acid. L-Selenocystine and 3,3'‑dimethyl-L-selenocystine decreased concentrations of free amino acids in rat serum by 12.17 and 11.78%, respectively. The most significant reduction, by 74.6 and 66.4% respectively, was observed for proline, a marker of organism stress. Accumulation of selenium in liver and serum indicated close metabolism of L‑selenocystine and its derivative 3,3'-dimethyl-L-selenocystine.

Russian Journal of Bioorganic Chemistry. 2019;45(4):241-247
pages 241-247 views

Synthesis and Antitumor Activity of Conjugates Based on the Phe-D-Trp-Lys-Thr Peptide Fragment of Somatostatin

Avdeev D.V., Sidorova M.V., Ovchinnikov M.V., Moiseeva N.I., Osipov V.N., Balaev A.N., Khachatryan D.S.

Abstract

New somatostatin analogs containing the fragments of adamantane, coumarin, tetrahydrocarbazole, and palmitic acid of the general formula R-Phe-D-Trp-Lys(Boc)-Thr-OMe have been synthesized. The structure of the conjugates combines a peptide fragment, which has affinity for somatostatin receptors (sstr), and a nonpeptide fragment, which potentially possesses antitumor activity. Presumably, the compounds synthesized are the agonists of sstr. The amide bond between the peptide and nonpeptide fragments has been formed using the carbodiimide method and the method of activated esters. The structures of the conjugates have been confirmed by mass spectrometry (ESI+) and 1H NMR spectroscopy. The antitumor activity of the conjugates has been examined by the MTT test on human lung adenocarcinoma (A549), human prostate adenocarcinoma (PC3), human colon cancer (HCT-116), human breast cancer (MCF7), and acute human T‑cell leukemia (Jurkat) cell lines. Compounds selectively inhibiting the growth of A549 cells have been identified.

Russian Journal of Bioorganic Chemistry. 2019;45(4):248-252
pages 248-252 views

Exploration of Novel MTH1 Inhibitors Using Fragment-Based De Novo Design, Virtual Screening, and Reverse Virtual Screening Methods

Xin-yu Zhao ., Liu K., Wang X., Yu R., Kang C.

Abstract

MTH1 (MutT homologue 1, NUDT1), a member of the Nudix phosphohydrolase superfamily of enzymes, was speculated to contribute to hampering tumor growth based on a number of validation experiments. Based on the crystal structure of MTH1, de novo design was employed to construct a series of new MTH1 inhibitors by means of fragment-based strategy. ADMET (absorption, distribution, metabolism, excretion, toxicity) were used to assess the pharmacokinetic profiles; pharmacophore screening and molecular docking were carried out to obtain 9 candidate molecules. Then, molecular dynamic (MD) simulations were performed to learn the stability of receptor–ligand complexes, which have the lowest binding energy in docking, and the binding model was analyzed. Finally, using reverse virtual screening, potential targets of query compounds, especially those enzymes participating in various cancer-related pathways, were found. The results provide theoretical basis for the design of more potent MTH1 inhibitors.

Russian Journal of Bioorganic Chemistry. 2019;45(4):253-262
pages 253-262 views

Amplification Efficiency and Substrate Properties of Fluorescently Labeled Deoxyuridine Triphosphates in PCR in the Presence of DNA Polymerases without 3'-5' Exonuclease Activity

Lapa S.A., Volkova O.S., Spitsyn M.A., Shershov V.E., Kuznetsova V.E., Guseinov T.O., Zasedatelev A.S., Chudinov A.V.

Abstract

The kinetics of PCR amplification has been studied using fluorescently labeled zwitterionic deoxyuridine triphosphates that contain different fluorophores linkers of different lengths between the fluorophore and nitrogenous base. The concentration dependence of the modified substrate on the yield of the PCR product has been studied. Taq and Vent (exo–) DNA polymerases without 3'-5' exonuclease activity have been used for amplification, and the subsequent hybridization analysis of amplification products has been performed. Hydrophobicity and spatial size of the fluorophore have been found to affect inhibition of polymerases in PCR, while the length of the linker between the fluorophore and heterocyclic base has a significant impact on the substrate properties of the labeled deoxyuridine derivatives, i.e., on their incorporation in the PCR product. Electroneutral derivatives of deoxyuridine triphosphate with an average linker length have appeared to be most effective in PCR and subsequent microarray hybridization analysis. The studied fluor-dUTP are suitable for the incorporation of labels in PCR products using Taq and Vent (exo–) DNA polymerases in the subsequent hybridization analysis.

Russian Journal of Bioorganic Chemistry. 2019;45(4):263-272
pages 263-272 views

Induction of Apoptosis in SKOV3 and DNA Binding by Cobalt(III) Polypyridyl Complexes

Ravi C., Vuradi R.K., Avudoddi S., Ramchander M., Satyanarayana S.

Abstract

Three new Co(III) polypyridyl complexes [Co(phen)2CIIP]3+ {CIIP = 2-(5-chloro-3a,H-isoindol-3-yl)-1H-imidazo[4,5-f][1,10]phenantholine} (phen = 1,10 phenanthroline), [Co(bpy)2CIIP]3+ (bpy = 2,2′-bipyridine), and [Co(dmb)2CIIP]3+ (dmb = 4,4′-dimethyl-2,2′-bipyridine) were synthesized and characterized by different spectral methods. The complexes interact with DNA in an intercalation mode as confirmed by spectroscopic titration and viscosity measurements. All three complexes cleaved the pBR322 DNA in photoactivated cleavage studies and exhibited good antimicrobial activity. Anticancer activity of these Co(III) complexes was evaluated on the SKOV3 cell line. Cytotoxicity by MTT assay showed growth inhibition in dose dependent manner. Cell cycle analysis by flow cytometry data showed increase in Sub G1 population. Annexin V FITC/PI staining confirmed that these complexes caused cell death by the induction of apoptosis.

Russian Journal of Bioorganic Chemistry. 2019;45(4):273-284
pages 273-284 views

Inhibitory Effect of Transcription Factor YB-1 in the Development of Signal from an Innate Immunity Receptor NOD2

Alekseeva L.G., Laman A.G., Shepelyakovskaya A.O., Plekhanova N.S., Ivanov V.T.

Abstract

It was shown that in the presence of the recombinant protein YB-1, the response of human leukemic monocytes THP-1 to stimulation with muramylpeptide GMDP and LPS was significantly reduced, which was manifested in a decrease of the relative content of mRNA encoding the following molecules: proinflammatory cytokine IL-1β, innate immunity receptors NOD2 and TLR4, their adapters RIP2 and MyD88, and the p105/p50 (NF-κB1) and p100/p52 (NF-κB2) subunits of the NF-κB transcription factor. The inhibiting effect of YB-1 protein also follows from the lower level of p65 protein (RelA NF-kB) in nuclei of cells stimulated with LPS and GMDP/LPS. Inactivation of the NOD2 gene in the THP-1 cells resulted in a decrease of IL-1β mRNA in response to GMDP, LPS, and GMDP/LPS. At the same time, inactivation of the YB-1 gene led to an increased relative content of IL-1β and other molecules’ mRNA upon stimulation with GMDP. However, in response to stimulation with LPS and GMDP/LPS the level of IL-1β mRNA decreased in comparison to the initial cells, which indicates that YB-1 is necessary for the induction of an optimal immune response. Thus, the data obtained indicate the involvement of YB-1 in the innate immunity receptor system as a negative regulator of NOD2 receptor activity.

Russian Journal of Bioorganic Chemistry. 2019;45(4):285-291
pages 285-291 views

Synthesis and Cytotoxicity of О- and N-Acyl Derivatives of Azepanobetulin

Lopatina T.V., Medvedeva N.I., Baikova I.P., Iskhakov A.S., Kazakova O.B.

Abstract

A five-stage synthesis of azepanobetulin from betulin with a total yield of 47% has been carried out. The acylation of azepanobetulin with anhydrides or acid chlorides (acetic, phthalic, nicotinic) and tosylation resulted in the synthesis of О- and N-derivatives of azepanobetulin. Azepanobetulin, its 28-tosylate, 3а-N,28-О-dinicotinoate, and 3-N,28-О-diacetate showed antitumor activity toward a large panel of cancer cells, whereas mono-С28-acylates were ineffective. In contrast to azepanobetulin, its azepanone analog did not possess cytotoxicity. Leukemia and colon tumor cells were most sensitive to azepanobetulin and its bisacylates. Azepanobetulin was highly effective toward the melanoma cell line. 28-О-para-Tosylazepanobetulin exhibited antitumor activity toward nine cancer types and produced a cytocidal effect toward 31 cell lines.

Russian Journal of Bioorganic Chemistry. 2019;45(4):292-301
pages 292-301 views

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