The use of H/D exchange for secondary structure characterization of supermetallized complexes of ubiquitin with cerium(III)


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Abstract

The approach of hydrogen/deuterium exchange combined with ultrahigh resolution mass spectrometry was applied for investigation of conformational changes of supermetallized ubiquitin ions with cerium(III) atoms. The dependencies of the hydrogen/deuterium exchange efficiency on the charge state of ubiquitin ion, the number of associated cerium atoms, as well as on the temperature were obtained. The reaction of hydrogen/deuterium exchange was performed directly in the ionization source according to previously described method. It was found that the number of exchanges is hardly altered under the addition of cerium atoms. This result indirectly suggests that the conformation of small protein supermetallized ions does not significantly change during electrospray ionization.

About the authors

Yu. Kostyukevich

Skolkovo Institute of Science and Technology; Institute for Energy Problems of Chemical Physics; Emanuel Institute of Biochemical Physics

Email: ennikolaev@rambler.ru
Russian Federation, ul. Novaya 100, Skolkovo, Moscow oblast, 143025; Leninskii pr. 38, k. 2, Moscow, 119334; ul. Kosygina 4, Moscow, 119334

P. Yacovlev

Moscow Institute of Physics and Technology

Email: ennikolaev@rambler.ru
Russian Federation, Institutskii per. 9, Dolgoprudny, Moscow oblast, 141700

A. Kononikhin

Institute for Energy Problems of Chemical Physics; Moscow Institute of Physics and Technology; Kulakov Research Center for Obstetrics, Gynecology, and Perinatology

Email: ennikolaev@rambler.ru
Russian Federation, Leninskii pr. 38, k. 2, Moscow, 119334; Institutskii per. 9, Dolgoprudny, Moscow oblast, 141700; ul. Oparina 4, Moscow, 117997

I. Popov

Emanuel Institute of Biochemical Physics; Moscow Institute of Physics and Technology

Email: ennikolaev@rambler.ru
Russian Federation, ul. Kosygina 4, Moscow, 119334; Institutskii per. 9, Dolgoprudny, Moscow oblast, 141700

A. Bugrova

Emanuel Institute of Biochemical Physics; Kulakov Research Center for Obstetrics, Gynecology, and Perinatology

Email: ennikolaev@rambler.ru
Russian Federation, ul. Kosygina 4, Moscow, 119334; ul. Oparina 4, Moscow, 117997

N. Starodubtzeva

Moscow Institute of Physics and Technology; Kulakov Research Center for Obstetrics, Gynecology, and Perinatology

Email: ennikolaev@rambler.ru
Russian Federation, Institutskii per. 9, Dolgoprudny, Moscow oblast, 141700; ul. Oparina 4, Moscow, 117997

E. Nikolaev

Skolkovo Institute of Science and Technology; Institute for Energy Problems of Chemical Physics; Moscow Institute of Physics and Technology

Author for correspondence.
Email: ennikolaev@rambler.ru
Russian Federation, ul. Novaya 100, Skolkovo, Moscow oblast, 143025; Leninskii pr. 38, k. 2, Moscow, 119334; Institutskii per. 9, Dolgoprudny, Moscow oblast, 141700

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