Vol 61, No 5 (2016)

X-ray and synchrotron methods that are most widely used in studies of cultural heritage objects (including archaeological sites)—X-ray diffraction analysis, X-ray spectroscopy, and visualization techniques— have been considered. The reported examples show high efficiency and informativeness of natural science studies when solving most diverse problems of archaeology, history, the study of art, museology, etc.

The results of studying the state of the surface of sapphire crystals by a complex of methods in different stages of crystal treatment are considered by an example of preparing sapphire substrates with a supersmooth surface. The possibility of purposefully forming regular micro- and nanoreliefs and thin transition layers using thermal and thermochemical impacts are considered. The advantages of sapphire substrates with a modified surface for forming heteroepitaxial CdTe and ZnO semiconductor films and ordered ensembles of gold nanoparticles are described. The results of the experiments on the application of crystalline sapphire as a material for X-ray optical elements are reported. These elements include total external reflection mirrors and substrates for multilayer mirrors, output windows for synchrotron radiation, and monochromators working in the reflection geometry in X-ray spectrometers. In the latter case, the problems of the defect structure of bulk crystals sapphire and the choice of a method for growing sapphire crystals of the highest structural quality are considered.

The applicability of the modified kinematic approximation to describe the off-specular neutron scattering from interfaces between media is analyzed. It is demonstrated that in some cases one can expect not only a qualitative but also a quantitative agreement between the data and the results of experiments and calculations based on more accurate techniques. Diffuse scattering from rough surfaces and thin films with correlated and noncorrelated roughness of the upper and lower interfaces and the neutron diffraction by stripe magnetic domains and magnetic domains with a random size distribution (magnetic roughness) are considered as examples.

The structure of the sodium-rich representative of the eudialyte group found by A.P. Khomyakov at the Lovozero massif (Kola Peninsula) is studied by X-ray diffraction. The trigonal cell parameters are: a = 14.2032(1) and c = 60.612(1) Å, V = 10589.13 Å3, space group R3m. The structure is refined to the final R = 5.0% in the anisotropic approximation of atomic displacement parameters using 3742|F| > 3σ(F). The idealized formula (Z = 3) is Na₃₇Ca₁₀Mn₂FeZr₆Si₅₀(Ti, Nb)₂O₁₄₄(OH)₅Cl₃ · H₂O. Like other 24-layer minerals of the eudialyte group, this mineral has a modular structure. Its structure contains two modules, namely, “alluaivite” (with an admixture of “eudialyte”) and “kentbrooksite,” called according to the main structural fragments of alluaivite, eudialyte, and kentbrooksite. The mineral found at the Lovozero alkaline massif shows some chemical and symmetry-structural distinctions from the close-in-composition labyrinthite modular mineral from the Khibiny massif. The difference between the minerals stems from different geochemical conditions of mineral formation in the two regions.

The crystal structure of Rb₂Mn₃(H₂O)₂[P₂O₇]₂, a new phase obtained in the form of single crystals under hydrothermal conditions in the MnCl₂–Rb₃PO₄–H₂O system, is determined by X-ray diffraction (Xcalibur-S-CCD diffractometer, R = 0.0270): a = 9.374(2), b = 8.367(2), c = 9.437(2) Å, ß = 99.12(2)°, space group P2₁/c, Z = 2, D_x = 3.27 g/cm³. A correlation between the unit-cell parameters and the size of cations forming the crystal structures of isostructural A₂M₃(H₂O)₂[P₂O₇]₂ diphosphates (A = K, NH₄, Rb, or Na; _M = Mn, Fe, Co, or Ni) is revealed. It is shown that, due to the topological similarity, the structures of diphosphates and orthophosphates of the farringtonite structural type can undergo mutual transformations.

Two new coordination polymers [Cd₃(D-Tar)₃]_n (1) and [Pb(meso-Tar)]_n (2) (H₂Tar = tartaric acid) have been synthesized by hydrothermal reaction and characterized by single crystal X-ray diffraction analysis and IR spectra. 1 crystallizes in the C222₁ chiral space group and shows a 3D (4,4)-connected net with the (4.6.8⁴)₄(4.6².8².10)(4.6².8³)(4.6³.8²)(4.6³.8²)₄(4.8⁵)₂ topology. 2 possesses a 3D (4,4)-connected net with the (4³.6².8) topology. In addition, the thermogravimetric analyses (TGA) results for polymers are discussed.

The three-dimensional organization of monodisperse hyper-branched macromolecules of regular structure—carbosilane dendrimers of zero, third, and sixth generations—has been studied by small-angle X-ray scattering (SAXS) in solution. The use of modern methods of SAXS data interpretation, including ab initio modeling, has made it possible to determine the internal architecture of the dendrimers in dependence of the generation number and the number of cyclosiloxane end groups (forming the shell of dendritic macromolecules) and show dendrimers to be spherical. The structural results give grounds to consider carbosilane dendrimers promising objects for forming crystals with subsequent structural analysis and determining their structure with high resolution, as well as for designing new materials to be used in various dendrimer-based technological applications.

Pyrimidine nucleoside phosphorylases, which are widely used in the biotechnological production of nucleosides, have different substrate specificity for pyrimidine nucleosides. An interesting feature of these enzymes is that the three-dimensional structure of thymidine-specific nucleoside phosphorylase is similar to the structure of nonspecific pyrimidine nucleoside phosphorylase. The three-dimensional structures of thymidine phosphorylase from Salmonella typhimurium and nonspecific pyrimidine nucleoside phosphorylase from Bacillus subtilis in complexes with a sulfate anion were determined for the first time by X-ray crystallography. An analysis of the structural differences between these enzymes demonstrated that Lys108, which is involved in the phosphate binding in pyrimidine nucleoside phosphorylase, corresponds to Met111 in thymidine phosphorylases. This difference results in a decrease in the charge on one of the hydroxyl oxygens of the phosphate anion in thymidine phosphorylase and facilitates the catalysis through S_N2 nucleophilic substitution. Based on the results of X-ray crystallography, the virtual screening was performed for identifying a potent inhibitor (anticancer agent) of nonspecific pyrimidine nucleoside phosphorylase, which does not bind to thymidine phosphorylase. The molecular dynamics simulation revealed the stable binding of the discovered compound—2-pyrimidin-2-yl-1H-imidazole-4-carboxylic acid—to the active site of pyrimidine nucleoside phosphorylase.

Fe/Ni nanotubes were formed in pores of polyethylenterephtalate-based template matrices by electrochemical deposition. The inner diameter, wall height, and thickness of the nanostructures, as well as the elemental and phase compositions, can be controlled by varying the deposition conditions. The volume deposition rate constants have been determined for each potential difference, due to which the nanostructure growth could be controlled. An X-ray diffraction analysis of the samples obtained at a potential difference of 1-1.6 V has revealed their composition to correspond to the substitutional solid solution, with an iron atom replaced by a nickel atom and dominance of the bcc a-Fe phase. The samples obtained at a potential difference of 1.8–2 V contain the bcc a-Fe phase and fcc Ni phase; the fcc phase dominates in the sample obtained at a potential difference of 2 V, which can be related to the high Ni content in nanotubes.

The perturbation-theory method is proposed to calculate the induced anisotropy optical effects in crystals with different symmetries. On its basis, the influence of the Pockels effect on the light propagation in crystals with different symmetries is analyzed using Fedorov’s approach of invariant vector fields. This approach has many advantages over known methods in calculating different versions of Pockels effect application for different purposes. Calculation schemes are presented that make it possible to select longitudinal and transverse versions of electro-optical sensors and modulators, which can be used, in particular, to design optical measuring transformers and electric field sensors in high-voltage power lines.

The processes of structural rearrangement in a model membrane, i.e., an arachic acid monolayer formed on a colloidal solution of cerium dioxide or magnetite, are studied in situ in real time by the methods of X-ray standing waves and 2D diffraction. It is shown that the character of the interaction of nanoparticles with the monolayer is determined by their nature and sizes and depends on the conditions of nanoparticle synthesis. In particular, the structure formation in the monolayer–particle system is greatly affected by the stabilizer (citric acid), which is introduced into the colloidal solution during synthesis.