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Vol 46, No 11 (2019)

Methodology of Scientific Search

Redefining the Critical Value of Significance Level (0.005 instead of 0.05): The Bayes Trace

Rubanovich A.V.

Abstract

In 2017, a group of the leading mathematical statisticians published a paper-manifesto having an extremely simple sense: the common critical level of p-values should be decreased by an order of magnitude (0.005 instead of 0.05) (Benjamin, et al., 2017). In this review, the arguments of proponents and opponents of this proposal are discussed. Moreover, the problems related to the “reproducibility crisis” of the scientific results are considered. The corresponding argumentation cannot be understood without consideration of the fundamentals of the theory of statistical derivation. In this connection, the precise sense of some concepts, such as p-value, the Bayes factor, and the minimum a posteriori probability of the zero hypothesis are discussed in the review. This is made mainly with the examples related to the comparison of frequencies. It was shown that, when using p-values, particular attention should be paid to the comparison of low frequencies on the highly abundant samples. Some practical recommendations on application of the Bayes analysis are given.

Biology Bulletin. 2019;46(11):1449-1457
pages 1449-1457 views

Causal Criteria in Medical and Biological Disciplines: History, Essence, and Radiation Aspect. Report 1. Problem Statement, Conception of Causes and Causation, False Associations

Koterov A.N.

Abstract

Report 1 of a three-part review examines the conceptual formulation and relevance of the problem, including weak penetration of specific methodologies for causation proving into experimental and descriptive disciplines that study the effects of the radiation factor on living organisms. The philosophical and scientific concepts necessary for understanding the meaning, essence, and possibility of practical application of the criteria (rules, principles) for establishing the truth of associations revealed in medical and biological disciplines are presented. Five types of definitions of the causes and causality were found, which vary from the simplest explanatory (“by production”) to the complex, for deterministic and stochastic effects (necessary and sufficient causes, component causes, probabilistic causes, and counterfactual causes). Many of these definitions originate from famous philosophers (mostly D. Hume). A selection of statements revealing the scientific, practical and social goals of epidemiology and other causality studies important for human life and activity is presented. These goals are primarily related with evidence of the truth of the revealed dependences of effects on agents and impacts, however methods for their achievement can be based on different rules and ethical foundations established on scientific or social tasks. In the second case, the “precautionary principle” is used, and the norms of research developed for application in the scientific community are simplified, in may respects being replaced by prevention or at least reduction of risks, even if the reality of the latter does not have strict scientific evidence. Examples of false but statistically significant associations from various biomedical and social spheres (including estimates of effects of radiation exposure) caused by confound factors are presented. These examples indicate the need to use standardized criteria for assessing the truth of causality.

Biology Bulletin. 2019;46(11):1458-1488
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Molecular Radiobiology

Dose Dependence of Hypermethylation of Gene Promoters in Blood Leukocytes in Humans Occupationally Exposed to External γ-Radiation

Kuzmina N.S., Lapteva N.S., Rusinova G.G., Azizova T.V., Vyazovskaya N.S., Rubanovich A.V.

Abstract

Abstract—A study of promoter hypermethylation of cell cycle (RASSF1A, p16/INK4A, p14/ARF, p53, АТМ), xenobiotic detoxification (GSTP1), antioxidant defense (SOD3), and estrogen receptor (ESR1) genes in blood leukocytes of 88 nuclear industry workers from the Mayak facility (53–86 years old at sampling) exposed to prolonged external γ-radiation was carried out. Accumulated doses to red bone marrow (RBM) ranged from 0.2 to 2.95 Gy. The time between the end of work with radiation and blood sampling was on average 15.95 ± 1.22 years. Fifty unirradiated residents of Ozyorsk matched by age to the exposed group were enrolled as a control group. Promoter hypermethylation was analyzed using methylation-sensitive polymerase chain reaction (PCR) assay. The trend towards dependence of promoter hypermethylation of p14/ARF and RASSFA genes on age rather than radiation exposure (logistic regression: p = 0.072) confirms previous results. The frequency of individuals with promoter methylation of at least one of the following six genes: p16/INK4A, GSTP1, р53, АТМ,SOD3,ESR1, in irradiated group was significantly higher than in the control group (62.5 versus 34%, respectively, p = 0.001, OR = 3.24, 95% CI 1.56–6.69). A significantly elevated frequency of individuals with hypermethylated СpG islands in GSTP1 and SOD3 promoters was revealed among exposed subjects compared to the control group (p = 0.014 and p = 0.021, respectively). A statistically significant association between the cumulative dose and the number of methylated promoters was revealed (r = 0.304, р = 3.2 × 10–4). Therefore, the dose-dependent hypermethylation of CpG islands in gene promoters that is revealed in blood leukocytes long term after external exposure to γ-radiation was found.

Biology Bulletin. 2019;46(11):1489-1495
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Cell Radiobiology

Evaluation of the Contribution of Homologous Recombination in DNA Double-Strand Break Repair in Human Fibroblasts after Exposure to Low and Intermediate Doses of X-ray Radiation

Grekhova A.K., Pustovalova M.V., Eremin P.S., Ozerov I.V., Maksimova O.A., Gordeev A.V., Vorobyeva N.Y., Osipov A.N.

Abstract

Abstract—Studies of the changes in the number of γH2AX foci (a DNA double-strand break protein-marker), and Rad51 foci (a key homologous recombination protein) were conducted on human fibroblast cultures during the 24 hours after exposure to low (80 mGy) and intermediate (250 and 1000 mGy) doses of X-ray irradiation. Based this data, exponential curves that approximated the experimental values were constructed, and the characteristic lifetimes of the γH2AX and Rad51 foci were evaluated using the method of least squares. The ratio of the areas under the curves of changes in the number of Rad51 and γH2AX foci, calculated by the trapezium method, divided by the ratio of the characteristic lifetimes of the Rad51 and H2AX foci was used to evaluate the contribution of homologous recombination in DNA double-strand break repair. It was shown that the contribution of homologous recombination in DNA double-strand break repair during the 24 hours after exposure to 80, 250 and 1000 mGy was approximately 16, 12 and 9% respectively. Thus, the relative contribution of homologous recombination in the DNA double-strand break repair after exposure to a low dose of X-ray irradiation was approximately 1.5 times higher than that after exposure to intermediate doses. Our results suggest that DNA double-strand break repair induced after exposure to 80 mGy of X-ray irradiation is more accurate than after exposure to 250 and 1000 mGy.

Biology Bulletin. 2019;46(11):1496-1502
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Radiation Genetics

Delayed Changes in the Frequency of Unstable Chromosomal Aberrations and the CNA-Genetic Landscape of Blood Leukocytes in People Exposed to Long-Term Occupational Irradiation

Khalyuzova M.V., Litviakov N.V., Takhauov R.M., Isubakova D.S., Usova T.V., Bronikovskaya E.V., Takhauova L.R., Karpov A.B.

Abstract

Abstract—The results of a study of delayed changes in the frequency of unstable chromosomal aberrations and the CNA- and LOH-genetic landscape of blood leukocytes in healthy employees at the main facilities of the Siberian Group of Chemical Enterprises exposed to external irradiation are presented. In 2014, 11 persons with de novo induced mosaic deletions and amplifications associated with dicentric and/or ring chromosomes (markers for individual radiosensitivity) were detected. Three years later, the frequency levels of chromosomal aberrations were compared. In 2017 the frequency of aberrant cells had increased by 1.7 times compared to 2014, the frequency of the chromosomal type aberrations had doubled, the frequency of pair fragments had a more than fourfold increase, and the frequency of dicentrics had almost doubled. The mosaic deletion in employee no. 1490 (3q12.3–13.11) identified in 2014 persisted until 2017. Mosaic amplifications identified in 2014 were preserved in five out of six employees (nos. 178, 203, 450, 1620, and 1792). Moreover, we identified that the CNstate in employee no. 450 had increased 1.5 times by 2017. The mosaic amplification of the short arm of the third chromosome in employee no. 278 had been eliminated by 2017. Other changes in the CNA and LOH-genetic landscape were not detected. Thus, these data indicate the formation of self-sustained bone marrow clones, whose descendants produce a population of aberrant cells in the blood of irradiated individuals. Further research into the preservation of chromosomal aberrations and CNA is needed, as well as studies aimed at detecting the clones of aberrant cells in the bone marrow.

Biology Bulletin. 2019;46(11):1503-1511
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Radiation Cytogenetics

Prognosis of Post-Radiation Dynamics of Blood Neutrophil Count in Cases of Acute Uneven Irradiation (Cytogenetic Studies)

Nugis V.Y.

Abstract

The results of applying the method of prognosis of post-radiation curves of neutrophil count dynamics in the blood after acute nonuniform human irradiation based on the use of a special computer program and the results of cytogenetic analysis of the cultures of peripheral blood lymphocytes are presented. The computer program converts the distribution of the cells by the number of dicentrics in them into the distribution of lymphocytes by dose received. Data obtained from 10 patents injured in six different radiation incidents were processed. To take into account radiation-induced proliferation delay and interphase cell death, correction of the observed distributions of dicentric chromosomes was carried out. The comparison of real and predicted curves of neutrophil count dynamics indicates in general their satisfactory compliance.

Biology Bulletin. 2019;46(11):1512-1523
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Materials from the International Conference “Radiation Exposure-Related Problems of Chemical Protection and Repair” (Dubna, 30–31 May, 2018)

Pharmacologic Protection in Distant Space: Current View

Ushakov I.B., Vasin M.V.

Abstract

The radiation risk for astronauts in long space flights depends on the impact of low-intensity galactic and solar radiation on the spaceship. There is a small possibility of high solar activity during long space flights, which can threaten astronauts with doses causing deterministic radiation effects. B-190 (indralin) is the most promising radioprotector of the small number of radioprotective drugs allowed for use in humans. The antiemetic Latran (ondansetron) is of interest for prophylaxis of, and stopping the primary radiation response. Application of radiomitigators during proton radiation makes it possible to accelerate post-radiation recovery processes in hematopoietic tissue. Neupomax has been suggested for pathogenetic therapy of acute radiation illness. Natural antioxidants, drugs, nutritional supplements as radiomodulators, high-quality nutrition including vegetable products enriched with flavonoids and vitamins C and E, and carotin potentially promote prevention of accelerated aging in astronauts during long flights under the influence of solar and galactic cosmic rays and space flight stress factors.

Biology Bulletin. 2019;46(11):1524-1532
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Ethanol as a Possible Modifier of Acute Radiation Lesions of the Brain

Fyodorov V.P., Ushakov I.B., Shalnova G.A.

Abstract

Cerebral effects were studied in experiments on rats exposed to acute γ-radiation of the head at cerebral doses, with previous or subsequent administration of different ethanol doses. Both factors cause similar changes in neurological symptoms and neuromorphological effects. Ethanol before irradiation did not significantly modify the state of neurons, but caused the appearance of synapses degenerating via filament type. After irradiation, ethanol at the threshold dose did not change and at a large tranquilizing dose slightly increased radiation changes in neurons and synapses. The effects of radio-modification depended on the dose of ethanol and the time of its administration.

Biology Bulletin. 2019;46(11):1533-1539
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Modern Condition and Prospects for the Development of Medicines towards Prevention and Early Treatment of Radiation Damage

Grebenyuk A.N., Gladkikh V.D.

Abstract

An analysis of the current status and future directions of developing medicines for the prevention and early treatment of radiation damage has been conducted. Among radioprotectors, only B-190 (Indralin) is approved for use in the Russian Federation; the main radioprotector in foreign countries is amifostine (Ethyol). Some prospects in the development of new radioprotectors are associated with inhibitors of NO-synthases from the class of N-acyl-S-alkyl-substituted isothiourea derivatives, among which chemical compounds with a pronounced radioprotective effect are found. A recombinant human interleukin-1β (Betaleukin) has been registered in Russia as a radiomitigator intended for use in the early period after accidental irradiation. The US Food and Drug Administration (FDA) has approved the investigational new drug status for seven radiomitigators, including 5-androstenediol (Neumune), genistein (BIO 300), CBLB502 (Entolimod), a kinase inhibitor ON01210 (Ex-RAD), recombinant human interleukin-12 (HemaMax), beclomethasone (OrbeShield), and a granulocyte colony-stimulating factor (G-CSF, Neupogen). Ondansetron hydrochloride dihydrate (Latran) was registered as an antiemetic drug for prevention and therapy of the primary response to radiation in Russia, and granisetron (Kytril) was registered as an antiemetic drug upon irradiation abroad. Potassium iodide, potassium ferric hexacyanoferrate (Ferrocin), diethylenetriaminepentaacetate calcium trisodium (Pentacin, calcium trisodium pentetate), and 2,3-dimercaptopropansulfonate sodium (Unithiol) are used in Russia for the prevention and treatment of damage from irradiation via incorporated radionuclides. Potassium iodide (ThyroShield), diethylenetriaminepentaacetate zinc trisodium (Zn-DTPA, Pentetate zinc trisodium), diethylenetriaminepentaacetate calcium trisodium (Ca-DTPA, Pentetate calcium trisodium), and ferric hexacyanoferrate (Prussian blue, Radiogardase) are used as decorporation agents abroad. Cytokines, vitamins, low-molecular compounds, inhibitors of apoptosis, etc., are considered promising means for the prevention and early treatment of radiation damage.

Biology Bulletin. 2019;46(11):1540-1555
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Influence of Liposomal Compositions Containing AFP and GCSF Recombinant Human Proteins on Mice Skin Radiation Burn according to Clinical Indicators and Indices of Skin Stem Cells

Pryakhin E.A., Trjapitsyna G.A., Shaposhnikova I.A., Tyuhay M.V., Ostroumov Y.I., Shmelin P.S., Akleev A.V.

Abstract

Using a IIIA radiation skin burn model in CD1 mice, we demonstrated that transdermal application of liposomes containing rhAFP; liposomes containing rhGCSF; and liposomes containing rhAFP and rhGCSF on the affected area of the skin within two weeks after irradiation led to a significant reduction in the healing time of the burn wound according to clinical indices. The most effective was the use of liposomes containing rhAFP: the duration of the latent period increased 70%, the duration of the moist epidermitis was reduced by 60%, the duration of the reparative phase was reduced by 32%, and the total healing time of the burn was reduced by 44%, compared to the values for mice with untreated radiation burns. Immunohistochemical studies have shown that application of the studied drugs led to an increase in the survival of stem cells in the hair follicles of the skin: the most pronounced effect on histological indices was noted in the group treated with liposomes containing rhAFP and rhGCSF.

Biology Bulletin. 2019;46(11):1556-1563
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Modification of Radiation Effects

Effects of Indralin on Immunohematological Parameters and DNA Damage in Irradiated ICR (CD-1) Outbred Mice

Bushmanov A.Y., Osipov A.N., Ignatov M.A., Vorontsova M.D., Karaulova T.A., Gordeev A.V., Yashkina E.I., Nikitenko O.V., Bychkova T.M., Stavrakova N.M., Andrianova I.E., Blokhina T.M., Vorobyeva N.Y., Ivanov A.A.

Abstract

Abstract—Intragastric administration of radioprotector indralin (B-190 drug) to outbred SPF ICR (CD-1) mice 15 minutes before X-ray irradiation at doses of 6 Gy (LD-10/30), 6.5 Gy, and 7 Gy (LD-100/30) increases the 30-day survival of the animals and positively affects the state of the central organs of immunity and hematopoiesis, as well as the number of peripheral blood leukocytes. In addition, a positive effect on the behavioral reactions of the irradiated animals and striated muscles strength was noted. In addition to these secondary features of the indralin positive effect, a significant reduction of radiation-induced DNA damage in spleenocytes was observed using flow cytometry analysis of phosphorylated histone Н2АХ (γН2АХ) (1 h and eight days after X-ray irradiation) and DNA-comet assay (eight days after X-ray irradiation). The abovementioned methods are recommended for experiments investigating the influence of radioprotective drugs on DNA damage induction and repair in the irradiated organism, as well as for initial searching of potential radioprotectors and assessment of their effectiveness level in clinical practice and experiments.

Biology Bulletin. 2019;46(11):1564-1570
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Experimental Justification of Approaches to Developing Pathogenetic Means towards the Prevention and Treatment of Early Postradiation Gastrointestinal Disorders

Drachev I.S., Legeza V.I., Seleznev A.B., Grebenyuk A.N.

Abstract

Experiments on dogs have shown that antagonists of receptor types D2 (domperidone, metoclopramide, dimethpramide), 5-HT3 (ondansetron, palonosetron), and NK1 (aprepitant) impair gastrointestinal manifestations of the primary reaction to irradiation (vomiting and diarrhea). Blockers of H2 (cimetidine) and opiate (naloxone) receptors, inhibitors of prostaglandin synthesis (voltaren, indomethacin), and M-cholinolytic methacin have a predominantly antidiarrheal effect. None of the drugs in our trials reduced the severity of early postradiation hypokinesia. The most promising avenue to effectively prevent and treat the main clinical manifestations of the primary reaction to irradiation is assumed to be the development of complex drugs that affect various aspects of pathogenesis.

Biology Bulletin. 2019;46(11):1571-1575
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Radiation Epidemiology

Impact of the Radiation Factor on Mean Survival Time for Chernobyl Clean-up Workers with Solid Cancer

Gorski A.I., Maksioutov M.A., Tumanov K.A., Kochergina E.V., Ivanov V.K.

Abstract

The aim of this study was to investigate the mean survival time for Chernobyl clean-up workers (liquidators) with diagnosed solid cancer. The cohort of liquidators contained 142 871 males who worked in the Chernobyl exclusion zone from 1986–1987. Individual medical and dosimetry information collected during the follow-up period from 1991 up to 2015 was used in the study. The number of liquidators cases with documented stages of the disease was 7652, the number of overall death cases among those liquidators was 5085 (4351 deaths were due to cancer). Mean survival time for liquidators after the diagnosis of solid cancer (ICD-10: C00-C80.9) and documented tumor stages between 2000 over 2015 was 4.73 years. For tumors of respiratory organs (ICD-10: C30-C39.9), the mean survival time was 2.57 years; for tumors of digestive organs (ICD-10: C15-C26.9), 3.55 years. The mean survival time for liquidators with a documented diagnosis of cancer was continuously increasing despite the cohort aging and the increase of total mortality. The relationship between the mean survival time and tumor stage was studied. The dependence of the mean survival time on the stage of the tumor was investigated. The survival time, when changing from the 1st stage to the 4th stage, decreased seven times (from 8.62 to 1.22 years). The relationship between the mean survival time and radiation dose received by a liquidator was studied. Two dose groups were identified: group 0–100 mGy (average dose: 56.6 mGy) and group 100+ mGy (average dose: 187.9 mGy). Mean survival time was 4.66 and 4.72 years and the difference between the values was insignificant. Studies carried out in the cohort with varying size and age provided actual estimates of the effects of technological factors on health of certain human populations and groups.

Biology Bulletin. 2019;46(11):1576-1583
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A Comparative Analysis of the Stillbirth Incidence in Radioactively Contaminated Areas of Bryansk Oblast after the Chernobyl Accident (1986–2016)

Korsakov A.V., Hoffmann W., Pugach L.I., Lagerev D.G.

Abstract

Abstract—Based on the official statistics for 1986–2016, this paper presents the findings of a comparative analysis of the rate of stillbirth in boys and girls in radioactively contaminated areas of the Bryansk oblast with different radioactive contamination densities by the long-lived radionuclides 137Cs and 90Sr after the Chernobyl accident. No significant differences were found in the stillbirth rate for both the boys and girls between the radioactively contaminated and non-contaminated areas of the Bryansk oblast over the 31 years following the Chernobyl accident (1986–2016). The rate of stillborn boys over girls was significantly higher in radioactively contaminated areas (17%) compared with the corresponding data across the oblast (10%) and in the control areas (8%), with the most significant differences observed in the third period after the accident (2008–2016) (52%).

Biology Bulletin. 2019;46(11):1584-1594
pages 1584-1594 views

Radionuclides

Effect of Deuterium on the Expression of Inducible Genes in Escherichia coli

Abilev S.K., Igonina E.V., Smirnova S.V., Rubanovich A.V.

Abstract

It has been shown for the first time that preliminary incubation of bacteria in a medium containing deuterium oxide (D2O) at concentrations of 2.5 to 10% leads to an increase in recA expression induced by hydrogen peroxide at concentrations of 2.2–8.8 mmol/L. The induction of recA in deuterated and non-deuterated (control) cultures was compared using a biosensor based on the E. coli strain K12 MG1655 (pRecA-lux), where luminescence occurs as a result of recA promoter activation in response to DNA damage caused by H2O2. The most effective D2O concentrations were 5.0 and 7.5%. To explain the phenomenon, expression of the catalase gene was studied in deuterated and non-deuterated cultures of E. coli K12 MG1655 (pKatG-lux) biosensor. The luminescence of this biosensor results from activation of the katG promoter in response to an increase in the concentration of H2O2 in the cell. It was found that D2O downregulated katG expression, which can lead to H2O2 accumulation, and, as a consequence, to an increase in the level of DNA damage as seen by an increase in recA expression.

Biology Bulletin. 2019;46(11):1595-1600
pages 1595-1600 views