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Vol 31, No 4 (2016)

Reviews

The genomes and history of domestic animals

Larkin D.M., Yudin N.S.

Abstract

This paper reviews how mammalian genomes are utilized in modern genetics for the detection of genes and polymorphisms (mutations) within domesticated animal (mostly livestock) genomes that are related to traits of economic importance to humans. Examples are given of how genetic analysis allows to determine key genes associated with the quality and quantity of milk in cattle and key genes for meat production. Various questions are reviewed, such as how contemporary methods of genome sequencing allow to maximise the effective detection of coding and regulatory DNA polymorphisms within the genomes of major domesticated mammals (cattle, sheep and pigs) and the history of their formation from the standpoint of genetics.

Molecular Genetics, Microbiology and Virology. 2016;31(4):197-202
pages 197-202 views

Optogenetic approaches in neurobiology

Borisova E.V., Epifanova E.A., Tutukova S.A., Salina V.A., Babaev A.A.

Abstract

Optogenetics is a rapidly developing new technique that combines optical methods with techniques that are used in molecular biology. It can be used for monitoring various optical processes in cells and controlling their activity using light. The technique is based on bacterial opsin expression in mammalian neurons. In this review, the use of optogenetics for controlling the activity of specific neuronal populations in different regions of the human brain is considered in detail. The paper also presents information on light-sensitive proteins, genetically encoded optical instruments, and their use for activation or inhibition of neurons and investigation of the causal relationship between neural networks and pathological symptoms.

Molecular Genetics, Microbiology and Virology. 2016;31(4):203-207
pages 203-207 views

Experimental Works

Optimization of rhBMP-2 active-form production in a heterologous expression system using microbiological and molecular genetic approaches

Karyagina A.S., Boksha I.S., Grunina T.M., Demidenko A.V., Poponova M.S., Sergienko O.V., Lyaschuk A.M., Galushkina Z.M., Soboleva L.A., Osidak E.O., Semikhin A.S., Gromov A.V., Lunin V.G.

Abstract

Recombinant bone morphogenetic protein-2 (rhBMP-2) has pronounced osteoinductive properties, as evidenced by the results of experimental and clinical practices. This applies to both the protein produced in eukaryotic cells and the protein synthesized in bacterial cells. In eukaryotic expression systems, production of the protein is extremely low and, consequently, the cost of materials on its basis is very high. Therefore, optimization of heterologous expression systems for rhBMP-2 production represents an important task. In the present work, optimization of codon composition of the rhBMP-2 gene nucleotide sequence and secondary structure of the transcript, as well as strain selection for efficient gene expression, were carried out. The producing strain based on Escherichia coli BL-21(DE3) provides a high level of rhBMP-2 synthesis (about 57% of total cell proteins). Biological activity of rhBMP-2 dimeric forms purified from the obtained producing strain was measured by induction of alkaline phosphatase activity in C2C12 cells. It is comparable with that of commercial rhBMP-2 expressed in E. coli (R&D Systems, United States). Purified rhBMP-2 does not contain impurities of E. coli endotoxin and can be used in experimental studies of osteoinduction in laboratory animals.

Molecular Genetics, Microbiology and Virology. 2016;31(4):208-213
pages 208-213 views

Cplx2 gene expression following semax or PGP administration under conditions of two experimental models of rat-brain ischemia

Stavchansky V.V., Kurichenkova E.O., Dmitrieva V.G., Myasoedov N.F., Limborska S.A., Dergunova L.V.

Abstract

Complexin 2 is a cytosolic protein participating in synaptic-vesicle exocytosis. The RT-PCR technique was used in a real-time study of the dynamics of variation of expression of the Cplx2 gene that encodes this protein. The study was performed in the rat brain. Measurements under the conditions of incomplete global ischemia were performed during 1 day; measurements under the conditions of focal ischemia were carried out 3, 24, and 72 h after irreversible occlusion of the medial cerebral artery. The most significant decrease in Cplx2 transcripts under the conditions of incomplete global ischemia was observed in the hippocampus and the frontal cortex of rats 12 and 24 h after irreversible occlusion of the common carotid arteries, respectively. Under conditions of focal ischemia, a decrease in the content of Cplx2 transcripts was observed only in focal lesions of the frontoparietal cortex 24 h after occlusion. The effect of Semax neuroprotector peptide and its C-terminal fragment Pro-Gly-Pro on Cplx2 expression was examined under the model ischemia conditions. In the case of incomplete global ischemia, application of Semax compensated for the maximum decrease in Cplx2 expression in the frontal cortex and hippocampus in rats caused by lesions. However, the peptide had no effect when used in rats with focal ischemia. The effect of PGP on Cplx2 expression under conditions of experimental ischemia was more complicated and did not always coincide with the effect of Semax. The obtained results provide insight into the specific features of Cplx2 expression under the conditions of experimental brain ischemia and help to better understand the mechanisms of activity of peptide preparations.

Molecular Genetics, Microbiology and Virology. 2016;31(4):214-219
pages 214-219 views

The role of group B streptococcus in the development of nosocomial infections

Kuzmin V.N., Arslanyan K.N., Kharchenko E.I., Adamyan L.V.

Abstract

In this article, the role of group B streptococcus in the development of nosocomial infection in maternity hospitals is discussed. Its features, prevalence, and infection risk factors, as well as various forms of bacterial infection in infants, pregnant women, and women in childbirth are considered. World data and the data from own research on the role of group B streptococcus in obstetrics and perinatology are presented.

Molecular Genetics, Microbiology and Virology. 2016;31(4):220-226
pages 220-226 views

Dioxidine induces bacterial resistance to antibiotics

Mazanko M.S., Chistyakov V.A., Prazdnova E.V., Pokudina I.O., Churilov M.N., Chmyhalo V.K., Batyushin M.M.

Abstract

The capability of the dioxidine drug to cause bacterial resistance to antibiotics was studied. The study was performed with the use of a bioluminescent test and the recombinant E. coli strains MG 1655 (pSoxS-lux), MG1655 (pKatG-lux), MG1655 (pRecA-lux), and MG1655 (pColD-lux). The strains harbored plasmids with the operon luxCDABE from the photobacteria Photorhabdus luminescens under control of the corresponding E. coli stress-inducible promoters. The mutation frequency of the stable mutants was found by conventional methods for nonpathogenic and opportunistic strains of E. coli, Bacillus amyloliquefaciens, and Klebsiella pneumoniae. Dioxidine was shown to induce the promoters PrecA and Pcda in E. coli MG1655, which suggests the induction of the SOS-response in bacterial cells. The Pcda induction was higher than with PrecA. The value of the induction coefficient was highest if the dioxidine concentration was 2.25 × 10–5 M. Moreover, this drug enhanced the induction of the SoxS and KatG promoters responding to the superoxide anion radical and hydrogen peroxide, which suggests possible participation of oxidative mechanisms in dioxidine DNA damage. The maximal value of the induction coefficient was also observed under conditions of 2.25 × 10–5 M. Dioxidine can induce mutations leading to antibiotic resistance in all bacterial strains studied. An increase in mutation frequency was observed for rifampicin (twofold), ciprofloxacin (sixfold), and azithromycin (fourfold). These data show the necessity for an antibiogram for every patient who is taking or has taken dioxidine.

Molecular Genetics, Microbiology and Virology. 2016;31(4):227-232
pages 227-232 views

The in vivo antitumor effect of the apoptin-producing recombinant vaccinia virus strain is associated with blockage of mitotic division of cancer cells

Zonov E.V., Kochneva G.V., Tupitsyna A.V., Ryabchikova E.I.

Abstract

Vaccinia virus (VACV) possesses a natural oncolytic activity, for the enhancement of which genes encoding various effector molecules, for example, those inducing apoptotic death of tumor cells, are introduced into the virus genome. One such transgene is the gene encoding apoptin protein. The aim of the current work was to study antitumor activity of the apoptin-producing recombinant VACV strain VVdGF-ApoS24/2 in a syngenic murine tumor model. An Ehrlich carcinoma was implanted subcutaneously or intraperitoneally into C57B1 line mice. After tumor development, mice were intratumorally injected with 107 PFU/mouse of VVdGF-ApoS24/2 virus in a single dose, while control mice received 0.9% NaCl solution. Animals were sacrificed at different times after VACV injection. Tumor samples and ascetic fluid cells were fixed in 4% paraformaldehyde and further studied by light microscopy, immunohistochemistry, and electron microscopy. Virus titers in tumor cells were determined by the PFU method. VVdGF-ApoS24/2 VACV strain caused a significant reduction in the volumes of both solid and ascites Ehrlich carcinomas compared to the tumors in the control group of mice, although the virus reproduction rate in the tumor cells was rather low. The antitumor effect of VVdGF-ApoS24/2 could neither be attributed to virus-induced destruction, necrosis, or apoptosis of tumor cells nor to accumulation of the immune-effector cells in the tumors. A decrease in the number of tumor cells undergoing mitosis was observed when examining carcinoma sections, while counting Ki-67 and PCNA positive cells and analysis of their numbers showed that VVdGF-ApoS24/2 strain arrests cell cycle in the S-phase, thereby blocking tumor-cell division and slowing down tumor growth. The obtained results indicate that the insertion of the gene encoding apoptin into the genome of the original L-IVP VACV strain improved the ability of the virus to arrest the cell cycle in Ehrlich carcinoma cells.

Molecular Genetics, Microbiology and Virology. 2016;31(4):233-239
pages 233-239 views

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