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Vol 34, No 4 (2019)

Reviews

HeLa Cell Culture: Immortal Heritage of Henrietta Lacks

Andryukov B.G., Bynina M.P., Lyapun I.N.

Abstract

When we use cell cultures in research, we rarely think about the story behind them, which can be intriguing, providing insight, and sometimes tragic. In the 1950s, the culture of HeLa cells unexpectedly became well known scientifically and became one of the most famous cell cultures. These cells were taken from a woman named Henrietta Lacks, who had cervical cancer and died shortly afterward, and the HeLa cell line proved to be an essential tool for several generations of scientists around the world in developing new treatments and biomedical research. These cells have become unique due to their immortality, endless division, easy cultivation, and adaptation to conservation conditions. At the same time, HeLa cells remain a simplified imitation of the human body.

Molecular Genetics, Microbiology and Virology. 2019;34(4):195-200
pages 195-200 views

The Cytotoxic Necrotizing Factor of Yersinia pseudotuberculosis

Timchenko N.F., Psareva E.K., Ermolaeva S.A.

Abstract

Cytotoxic necrotic factor (CNF) of Yersinia pseudotuberculosis (CNFY) is a 114-kDa toxin protein that is similar to CNF1, which is prevalent among pathogenic and saprophytic Escherichia coli isolates. In 2002, the CNF of Y. pseudotuberculosis YPIII strain (United States) was first described. The Rho family small GTP-binding proteins (GTPases) are inactivated by CNFY acting on eukaryotic cells of humans and mammals, which causes the formation of large multinucleated cells. An analysis of Y. pseudotuberculosis toxins isolated in Russia showed that the thermolabile toxin TLT described earlier was identified as identical to CNFY except for three amino acid substitutions. The TLT’s cytotoxic activity is similar to that of CNFY. Screening of Y. pseudotuberculosis strains collection isolated during the outbreaks of Far East scarletlike fever (FESLF) and in sporadic cases from patients with pseudotuberculosis/FESLF, rodents, and the environment in the Far East, Siberia, and the northwest of the Russian Federation showed that most isolates carry the specific cnfY gene allele encoding the inactive CNFY isoform. This allele contains a stop codon and two large deletions that block the production of the full-sized toxin. Interestingly, all isolates obtained from patients with FESLF, which is a severe form of pseudotuberculosis and endemic to the Far East region, contain inactivated CNFY. Possible causes of CNFY inactivation in strains associated with Far East scarletlike fever are discussed.

Molecular Genetics, Microbiology and Virology. 2019;34(4):201-207
pages 201-207 views

Experimental Works

Genetic Diversity of Vibrio cholerae О1 El Tor during Epidemic Complications in the Siberian and Far East Regions

Mironova L.V., Ponomareva A.S., Khunkheeva Z.Y., Gladkikh A.S., Balakhonov S.V.

Abstract

The epidemic of cholera in Siberia and the Russian Far East during the seventh pandemic was recorded as sporadic cases of introduction of the infection into the territory or severe local outbreaks associated with the infection’s importation in the 1970s and 1990s. The genetic diversity and relationship of 83 V. cholerae O1 El Tor strains isolated from the region with epidemic complications were studied on the basis of the multilocus analysis of the variable number tandem repeats at five loci: VcA, VcB, VcC, VcD, and VcG. The VcB locus was characterized by the maximum polymorphism in the sample of the studied strains, while the VcC locus displayed the minimum polymorphism. Cluster analysis revealed the differentiation of V. cholerae strains during epidemic complications into seven clusters depending on the structure of the pathogenic determinants (typical and atypical El Tor vibrios), as well as on the time and direction of the pathogen importation. In some outbreaks in the Far East in 1999, the heterogeneity of the etiological agent populations was shown (five genotypes were detected among the outbreak strains from Yuzhno-Sakhalinsk, and six genotypes were determined among the strains from Primorskii krai). At the same time, the predominant MLVA profiles and their single locus variants were identified. The absence of a strict connection between the territory and the genotypes of V. cholerae outbreak strains (one strain from Yuzhno-Sakhalinsk showed the identity of the allele profile with the isolates from Vladivostok), as well as no correspondence of the V. cholerae genotype to a specific infection focus, was shown. According to the data of the MLVA typing, the V. cholerae O1 El Tor strains isolated from the Siberian and Far Eastern regions (Russia) with epidemic complications were characterized by the heterogeneity of their genetic organization, which agrees with the period and direction of their importation to the territory. During sporadic outbreaks of cholera, the clonality of the etiological agent was revealed. Closely related subclones, the emergence of which could result from the presence of the causative agent in the environment or passaging through a susceptible organism, were identified.

Molecular Genetics, Microbiology and Virology. 2019;34(4):208-215
pages 208-215 views

Search and Selection of Bacteriocin-Producing Strains of Marine Bacteria in the Aquatic Ecosystems of the Sea of Japan

Mikhailov V.V., Andryukov B.G., Lyapun I.N.

Abstract

Given the increasing antibiotic resistance of pathogenic bacteria, alternative antimicrobial strategies are being investigated. One promising area is the study of the antibacterial activity of bacteriocins, special peptides produced by bacteria, which play an important role in regulating the competitive inter- and intraspecific relationships in natural microbial systems. Marine microorganisms are a rich and promising source of bacteriocins. Marine ecosystems contain a huge variety of organisms, up to 90% of which are bacteria living in highly competitive and extreme conditions. Isolation and study of the antibacterial activity of bacteriocins of marine origin is a promising and unexplored area of innovative biotechnology. This article presents the results of a pilot study on the search and selection of bacteriocin-producing strains of marine bacteria from ecosystems of the Sea of Japan. Pseudoalteromonas elyakovii, Cobetia amphilecti, Paraglaciecola mesophila, and Idiomarina abyssalis clusters contain genes similar to Escherichia coli K12: J62 DNA, which are involved in the biosynthesis of colicins (microcin V MccV). This suggests a bacteriocinogenic potential of the studied strains of marine bacteria. The subsequent isolation and study of biological activity of these peptides will make it possible to draw a conclusion about the biological properties and mechanisms of the antagonistic action of these important compounds and the prospects for their use in industrial breeding of seafood (mariculture), as well as for medical and veterinary purposes.

Molecular Genetics, Microbiology and Virology. 2019;34(4):216-219
pages 216-219 views

Chondroitin Sulfate Increases Transfection Efficiency by DNA–PEI Complexes

Bulanenkova S.S., Snezhkov E.V., Potapov V.K., Akopov S.B., Sverdlov E.D.

Abstract

One of the most popular nonviral delivery systems for gene therapy constructs are carriers based on polyethylenimine (PEI) DNA complexes. A number of disadvantages associated with the lack of targeted delivery and increased cytotoxicity are overcome by adding auxiliary molecules to the complexes. An example of this is chondroitin sulfate (CS). The purpose of this work was to assess the effect of CS on the transfection properties of DNA–PEI complexes under different conditions of their preparation and transfection protocols. All complexes were prepared in solutions with high and low ionic strength. Transfection of C26 cells was performed according to two protocols differing in the presence of serum in the medium. The portion of transfected cells, transgene expression level, and cell viability were the main parameters of assessing the transfection efficiency. In binary DNA–PEI complexes prepared in different salt conditions, using different transfection protocols, the difference in the portion of transfected cells reached ten times. Addition of CS improved this transfection efficiency indicator up to 6.5 times, while the maximum difference in this indicator for the corresponding ternary complexes was reduced to 2.5 times. Changes in the proportion of CS in the composition of the complexes had an insignificant effect on their transfection properties. In the case of complexes prepared in high ionic strength solutions, the order of CS addition was also important. The best results of transfection efficiency were achieved with ternary complexes prepared in low ionic strength solutions, using a serum-free protocol, while these indicators were comparable with the data for Lipofectamine 2000. The addition of chondroitin sulfate improves the transfection properties of DNA–PEI complexes and makes them less dependent on the methods of preparation and transfection.

Molecular Genetics, Microbiology and Virology. 2019;34(4):220-227
pages 220-227 views

Methods of Research

An Optimized Electroporation-Free Method for Generation of Recombinant Adenoviral Plasmids

Shepelev M.V., Korobko I.V.

Abstract

Recombinant adenoviruses are widely used for delivery and expression of transgenes for therapeutic purposes and in fundamental research. AdEasy™ adenoviral vector system allows for rapid and efficient generation of replication-deficient adenoviruses. One important crucial step in producing recombinant adenoviruses is the generation of a recombinant adenoviral plasmid in E. coli BJ5183 cells via homologous recombination between the transgene encoding shuttle vector and the pAdEasy-1 plasmid, which carries a significant part of human adenovirus serotype 5 (Ad5) genome. In many published protocols, the necessity of electroporation for the transformation of the shuttle vector and pAdEasy-1 into E. coli cells is emphasized, thus making necessary the availability of the appropriate instruments and consumables. Here, we have proposed an optimized protocol for the generation of recombinant adenoviruses with the use of chemically competent E. coli cells only, without the use of electroporation. We have demonstrated the efficient transformation of linearized nonpurified shuttle vector into chemically competent E. coli BJ5183-pAdEasy-1 cells allowing identification of clones with correct recombinant adenoviral plasmids. Using the optimized protocol, we have generated four functional replication-deficient adenoviruses expressing target proteins in HEK293 cells. The protocol that has been suggested provides a significantly simplified and cheaper method for the generation of recombinant adenoviruses due to lack of requirement to use instruments and consumables for electroporation.

Molecular Genetics, Microbiology and Virology. 2019;34(4):228-233
pages 228-233 views

Short Communication

Application Laser Transfer of Metal Nanoparticles to Bacterial Biofilms

Tolordava E.R., Kudryashov S.I., Nastulyavichus A.A., Ionin A.A., Romanova Y.M.

Abstract

The method of application laser transfer of silver and copper nanoparticles for the first time has been shown to be effective against biofilms formed on a solid substrate. It has been experimentally confirmed that this effect is not associated with the influence of the laser itself. The proposed method allows one to increase the locality, availability, and efficiency of biofilm destruction due to the bactericidal effect of metal nanoparticles with a slight direct laser effect on the biofilm.

Molecular Genetics, Microbiology and Virology. 2019;34(4):234-236
pages 234-236 views

Article

Association Study of Nuclear Abnormalities and Polymorphisms of Oxidative Stress Genes with Endemic Goiter Incidence

Bisultanova Z.I., Dzhambetova L.M., Machigov E.A., Atsaeva M.M., Dzhambetova P.M.

Abstract

Endemic goiter is one of the most common endocrine diseases in Russian Federation. There is a strong need for new methods to detect and treat this disease. Analysis of nuclear abnormalities in buccal epithelial cells can be used to estimate overall exposure of patients to various endo- and exogenic factors associated with a disorder. We performed an association study of nuclear abnormalities in buccal epithelial cells and as well polymorphisms of genes encoding superoxide dismutase 1 (SOD1) and superoxide dismutase 2 (SOD2) in patients with endemic goiter. We observed an increased frequency of nuclear abnormalities related to early stages of apoptosis and necrosis in buccal epithelial cells of patients with endemic goiter when compared to cells from healthy individuals. Nuclear abnormalities in patients with endemic goiter are more common in heterozygous carriers of minor alleles of SOD1 G7958A and SOD2 58T>C polymorphisms when compared to homozygous individuals. Furthermore the presence of minor allele of SOD2 60C>T polymorphism in individuals with endemic goiter decreases the frequency of nuclear abnormalities. The results of this study could be used for the further development of effective and low-cost methods of endemic goiter diagnostics.

Molecular Genetics, Microbiology and Virology. 2019;34(4):237-243
pages 237-243 views

Cloning and Transfer of the esp Gene from Enterococci to Salmonella

Diani M., Akçelik M., Akçelik N.

Abstract

Fifteen Enterococcus faecium and 33 E. faecalis isolates were tested to determine the relationship between the presence of the esp gene and biofilm production. It was determined that 4 of the tested isolates contained esp gene. However, none of these strains containing the esp gene were significantly stronger biofilm producers than esp-negative strains. These data indicate that esp is not critical for biofilm formation both for Enterococcus faecium and E. faecalis. Cloning N-terminal domain of Esp protein and controlled expression under arabinose promoter experiments were performed. As a result of cloning and expression of esp, Salmonellatyphimurium LT2 became more adherent to polystyrene than wild type strain. These results demonstrate that: (i) Esp surface protein is not mandatory for biofilm production of E. faecium and E. faecalis strains, (ii) the presence of esp gene enhances biofilm formation of enterococci, (iii) horizontal transfer of esp gene may cause the spread of biofilm infections, not only among enterococcal strains but also different species such as Salmonella.

Molecular Genetics, Microbiology and Virology. 2019;34(4):244-251
pages 244-251 views

Bactericidal Efficacy of New Types of Magnesium Hydroxide and Calcium Carbonate Nanoparticles

Sanaa G. Al Attas ., Faten Al-Hazmi ., Alwafi R., Alahmadi A.A., Al-Quwaie D.A., Bahieldin A., Edris S.

Abstract

Objectives of the present study were to evaluate the antibacterial activity of the two types of inorganic magnesium hydroxide [Mg(OH)2] and calcium carbonate [CaCO3] nanoparticles (NPs) on the growth of three Gram-negative bacteria, e.g., Escherichia coli, Pseudomonas aeruginosa and Serratia marcescens and three Gram-positive bacteria, e.g., Streptococcus pyogenes, Staphylococcus aureus and Streptococcus bovis. The synthesis of these NPs was done by a microwave hydrothermal method. The structures and sizes of synthesized nanoparticles were investigated using X-ray diffractometer. Antimicrobial susceptibility of different NPs was determined at 20, 50 and 100 mg/mL by the agar-well diffusion method, growth reduction at the aqueous solution and time-kill assay. The antimicrobial effects across NPs and bacterial species were shown to be dose-dependent. The results of the different experiments indicated that smaller NP sizes have higher antibacterial effects. M29 [Mg(OH)2-29] nanoparticles followed by silver (Ag) and C1 (CaCO3-1) showed the highest influence on bacterial growth rates, while similar ability to kill bacteria across treatment time. In addition, Gram-negative bacteria were more affected in terms of the inhibition zone and reduction of growth rates after 24 h as well as in terms of the prolonged treatment of NPs up to 36 h due to the influence of different nanoparticles. We recommend to search the chance of further using M29 and C1 in medicine and industry.

Molecular Genetics, Microbiology and Virology. 2019;34(4):252-262
pages 252-262 views

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