Moscow University Biological Sciences Bulletin

Moscow University Biological Sciences Bulletin is a peer-reviewed journal for reporting original research in all important areas of biology, including qualitative, analytical, and experimental aspects. The range of articles encompasses a wide array of subdisciplines, including plant biology, zoology, ecology, evolutionary biology, biophysics, genetics, genomics, proteomics, molecular biology, cell biology, biochemistry, endocrinology, immunology, physiology, pharmacology, neuroscience, gerontology, developmental biology, bioinformatics, bioengineering, virology, and microbiology. Previously focused on translation, the journal now has the aim to become an international publication and accepts manuscripts originally submitted in English from all countries, along with translated works. The peer review policy of the journal is independent of the manuscript source, ensuring a fair and unbiased evaluation process for all submissions.

PEER REVIEW AND EDITORIAL POLICY

The journal follows the Springer Nature Peer Review Policy, Process and Guidance, Springer Nature Journal Editors' Code of Conduct, and COPE's Ethical Guidelines for Peer-reviewers.

Approximately 35% of the manuscripts are rejected without review based on formal criteria as they do not comply with the submission guidelines. Each manuscript is assigned to at least two peer reviewers. The journal follows a single-blind reviewing procedure. The period from submission to the first decision is up to 25 days. The approximate rejection rate is 25%. The final decision on the acceptance of a manuscript for publication is made by the Editor-in-Chief, Deputy Editor-in-Chief, or by the Meeting of Editorial Board members.
Editors, including the Editor-in-Chief, rarely publish in the journal and do not participate in the decision-making process for manuscripts where they are listed as co-authors.
Special issues published in the journal follow the same procedures as all other issues. If not stated otherwise, special issues are prepared by the members of the editorial board without guest editors.

.

Current Issue

Open Access Open Access  Restricted Access Access granted  Restricted Access Subscription Access

Vol 74, No 4 (2019)

Editorial

The Immortality of the Germ Line: The Neverending Story
Khokhlov A.N.
Abstract

This is a short review concerning the problem of germ line “immortality,” which was already formulated by A. Weismann at the end of the 19th century. Over the following years, it attracted the attention of many gerontologists, who tried to understand the mechanisms of infinite transfer of genetic information from generation to generation with the help of germ cells, which, in contrast to somatic cells, avoid aging in this way. However, it remained unclear how the germ cells of women, which are in fact a population of non-dividing cells (it is similar to stationary phase aging non-subcultured cell culture), provide the mentioned immortality of the germ line. Distinguished Russian gerontologist Zh.A. Medvedev, who passed away recently, published in 1981 his brilliant work “On the Immortality of the Germ Line: Genetic and Biochemical Mechanisms. A Review,” the main points of which are relevant up to today. His paper just discusses the possible mechanisms of such “immortality.” They are analyzed in detail in the current article and can be reduced mainly to the existence of a number of barriers that, in most cases, do not allow progeny to emerge from “old” germ cells (although certain “rejuvenating” processes in the gametes still go). Therefore, children are “born young.” Some alternative approaches to explaining the immortality of the germ line are also considered. Special attention is paid to the “parental age effect” and the role of eggs and sperm cells in this phenomenon.

Moscow University Biological Sciences Bulletin. 2019;74(4):189-193
pages 189-193 views

Research Article

The Spatial Distribution of Plankton Picocyanobacteria on the Shelf of the Kara, Laptev, and East Siberian Seas
Belevich T.A., Il’yash L.V., Chul’tsova A.L., Flint M.V.
Abstract

The spatial distribution of picocyanobacteria at the arctic longitude section passing through the shelf of the Kara, Laptev, and East Siberian seas from 58° to 168° E was studied. The average abundance of picocyanobacteria was 0.48 ± 1.2 × 109 cells/m3 in the Kara Sea, 0.16 ± 0.24 × 109 cells/m3 in the Laptev Sea, and 0.25 ± 0.43 × 109 cells/m3 in the East Siberian Sea. The fluctuations of picocyanobacterial abundance were determined by their presence in allochthonous sources: river flow and transformed North Atlantic waters. The highest abundance was observed in the areas of the runoff influence of the Ob, Khatanga, Indigirka, and Kolyma Siberian rivers: 0.5 × 109, 0.2 × 109, 0.4 × 109, and 1.6 × 109 cells/m3, respectively. The average contribution of picocyanobacteria to the total abundance and biomass of picophytoplankton in the western part of the Kara Sea was 37 and 36%, respectively. In other regions, the average contribution of picocyanobacteria to the total abundance and biomass of phototrophic picoplankton did not exceed 7 and 6%, respectively. A highly reliable (p\( \ll \) 0.01) positive correlation between the abundance and biomass of picocyanobacteria and the water temperature (p = 0.003) was revealed in the entire dataset obtained.

Moscow University Biological Sciences Bulletin. 2019;74(4):194-199
pages 194-199 views
Sexual Reproduction of the Black Sea Diatom Climaconeis scalaris (Brébisson) E.J. Cox
Davidovich O.I., Davidovich N.A., Gastineau R., Witkowski A.
Abstract

The paper reports a process of sexual reproduction in the Black Sea diatom Climaconeis scalaris (Brébisson) E.J. Cox, 1982, initiated in laboratory conditions. A crossing system of this species allows both homo- and heterothallic reproduction. The fertilization is allogamous. Diploid mother gametangial cells secreted mucilage, forming a mucilage track, while actively gliding relative to each other. Each gametangium in a pair produced two elongated, cylindrical round-ended haploid gametes, which were largely morphologically and behaviorally isogamous. The division of the protoplast of the gametangial cell occurred in the transapical plane without the rearrangement of gametes. Growing auxospores were located parallel to the parent frustules. The research produced data on changes in the cell size, number of chloroplasts, and the position of cardinal points in the life cycle of the examined species.

Moscow University Biological Sciences Bulletin. 2019;74(4):200-206
pages 200-206 views
The First Data on Testate Amoebae in the Coco River in Quang Nam and Da Nang Provinces, Vietnam
Tran Q.H.
Abstract

The first data on the species diversity of testate amoebae of the Coco River in the provinces of Quang Nam and Da Nang (Vietnam) are presented. A total of 55 species and subspecies of testate amoebae belonging to nine genera and six families have been identified in 28 samples. Species diversity of testate amoebae in plankton is higher than in benthic samples. Centropyxis aculeata (64.3%), Netzelia wailesi (39.3%), Difflugia acuminata (32.1%), Arcella discoides scutelliformis (28.6%), and Lesquereusia modesta (28.6%) are characterized by the highest frequency of occurrence. Difflugia (25), Arcella (12), Centropyxis (5), and Netzelia (4) are the most species-rich genera. The species accumulation curve based on the entire dataset is unsaturated and is described by the equation y = 12.56N0.46. The average species richness of testate amoebae per sample in plankton (13.0 ± 3.1) is statistically higher than in benthic samples (1.8 ± 1.5) (p < 0.001). The result of the redundancy analysis shows that the studied hydrochemical water parameters (temperature, pH, dissolved oxygen, electrical conductivity, and salinity) explain only 31.6% of the variation of testate amoeba diversity; the first and second axes explain 11 and 10.2% of this variation, respectively.

Moscow University Biological Sciences Bulletin. 2019;74(4):207-214
pages 207-214 views
Effects of Diazepam, Piracetam, and Mexidol on Passive Avoidance Response
Inozemtsev A.N., Berezhnoy D.S., Novoseletskaya A.V.
Abstract

Effects of the anxiolytic diazepam and nootropics piracetam and mexidol on passive avoidance conditioning (PAC) in rats were compared in experiments using a three-compartment apparatus. The latter consisted of a central, brightly lit compartment, a noxious dark compartment in which footshock was delivered to a rat, and a safe dark compartment, where the rat was not exposed to electric shock. Footshock during the acquisition of passive avoidance response in the control animals caused an abrupt increase in the latency to escape from the central compartment during testing but did not result in preference for a safe compartment. On the basis of these data on differential effects of footshock on PAC, we suggested that learning processes, which determined the motor response delay and the safe compartment preference, had a diverse associative nature. An increase in latency is associated with the classical fear conditioning regardless of the place of electric shock exposure. In contrast to this, the safe compartment preference is associated with the formation of the memory trace about the location of the footshock exposure. The use of pharmacological substances that affect fear and memory in different ways provided additional arguments in favor of the assumption about various associative processes determining passive avoidance learning. Reduction in the level of fear using diazepam decreased the latency of motor response compared to the control value but did not affect the preference for a safe compartment. In contrast, the mnemotropic properties of piracetam and mexidol increased the preference for a safe compartment without increasing the latency. These differential pharmacological effects confirm that PAC is based on the fear conditioning, which causes an increase in the latency to escape from the central compartment, and on the memory of the location of shock exposure, which provides the preference for the safe compartment.

Moscow University Biological Sciences Bulletin. 2019;74(4):215-220
pages 215-220 views
Participation of Nitrate Sensor NRT1.1 in the Control of Cytokinin Level and Root Elongation under Normal Conditions and Nitrogen Deficit
Korobova A.V., Akhiyarova G.R., Fedyaev V.V., Farkhutdinov R.G., Veselov S.Y., Kudoyarova G.R.
Abstract

NRT1.1 nitrate transporter acts as a nitrate sensor in some plant responses. We tried to check if it may be involved in the control of cytokinin level in the plants known to be involved in the growth responses to nitrate level. The experimental objects were Arabidopsis thaliana plants of the original ecotype Columbia (Col-0) and chl1-5 mutants. The effects of the NRT1.1 gene mutation in chl1-5 plants on hormonal and growth responses to nitrogen starvation were studied. Two types of growing conditions were used: (1) plants were placed on either standard Hoagland–Arnon or modified solution, where potassium and calcium nitrates were substituted with their chlorides; (2) plants were placed on Pryanishnikov medium, where ammonium nitrate serves as the source of nitrogen and nitrogen deficiency being modeled by its withdrawal from the medium. It has been first shown that mutation of the NRT1.1 resulted in a decline in cytokinin level in the roots of chl1-5 mutants, while roots of wild type plants were longer in accordance with lower cytokinin content in them; this hormone is known to inhibit root elongation. Cytokinin content decreased in A. thaliana, Columbia ecotype, paralleled by acceleration of root elongation in response to both variants of nitrogen starvation, while chl1-5 roots responded in this way only when nitrogen was withdrawn from Pryanishnikov solution. Substitution of nitrates by chlorides in the Hoagland–Arnon solution had no effects on either chl1-5 roots’ length or cytokinin content in them. The results suggested the involvement of NRT1.1 transceptor in the control of cytokinin level and root elongation rate in the nitrate but not in ammonium starved plants, confirming the specificity of response.

Moscow University Biological Sciences Bulletin. 2019;74(4):221-226
pages 221-226 views
The Effect of the Microalga Chlorella vulgaris Ippas C-1 Biomass Application on Yield, Biological Activity, and the Microbiome of the Soil during Bean Growing
Kublanovskaya A.A., Khapchaeva S.A., Zotov V.S., Zaytsev P.A., Lobakova E.S., Solovchenko A.E.
Abstract

The current problem with phosphorus fertilizers are shortage of rock phosphate from which it is produced and adverse impact of their production and use on the environment. A promising solution is use of phosphorus-rich biomass of microalgae as biofertilizer, but possible impact of such fertilizers on the biological activity and microbiome of soils remain unknown in many aspects. We investigated the effect of Chlorella vulgaris IPPAS C-1 (Chlorophyceae)  biomass application on yield, biological activity, efficacy of the rhizobia- and cyanobacteria-based growth promoting formulations, as well as the microbiome of the soil during cultivation of beans (Phaseolus vulgaris L.) cvr. “Strela.” Total and specific yield, actual nitrification and denitrification, carbon dioxide and methane emission were determined for soil samples from the rhizosphere. The taxonomic structure of the prokaryotic community of the bean rhizosphere was determined by NGS of 16s rRNA gene amplicons on the Illumina platform. The metagenomic data were analyzed using software tools QIIME and VAMPS. It was found that the application of biomass of C. vulgaris IPPAS C-1 as a phosphorus biofertilizer increased the bulk yield of beans. It also allowed to achieve the specific yield (per plant) level provided by traditional fertilizers. The biomass application did not (i) impact the biological activity of the soil, (ii) did not increase the level of denitrification, and (iii) did not increase significantly the soil emission of the “greenhouse gases.” The Chlorella biomass application hamper the growth-promoting effect of the bacterial preparations made from rhizobia and cyanobacteria. Also, no significant changes in the taxonomic composition of the soil of the rhizosphere microbiome upon the application of the Chlorella biomass were revealed. Collectively, the results indicate the possibility of at least partial replacement of chemical fertilizers with phosphorus biofertilizers from microalgae biomass in the field growing of beans.

Moscow University Biological Sciences Bulletin. 2019;74(4):227-234
pages 227-234 views
Selection of the Optimal Protocol for Preparation of a Decellularized Extracellular Matrix of Human Adipose Tissue-Derived Mesenchymal Stromal Cells
Matveeva D.K., Andreeva E.R., Buravkova L.B.
Abstract

Currently, biological scaffolds composed of extracellular matrix (ECM) are being actively examined for the needs of regenerative medicine. ECM substrates are prepared by decellularization and used to deliver cells to damaged tissue. Native scaffolds of ECM have an advantage over bioengineered ones because ECM retains natural biologic cues that provide efficient reparative cell functions. Mesenchymal stromal cells (MSCs) have a multipotent potential of differentiation and secrete a wide range of bioactive molecules. In this regard, MSCs are valuable intermediaries for tissue repair. The ECM as a critical component of the MSCs niche modulates their functional activity, including migration, proliferation, and differentiation, and supports their potential for self-renewal. In vitro investigations would be useful in elucidation of how biological scaffolds can affect the reparative functions of MSCs. There are several different protocols for decellularization. Since ECM of various cell types differs qualitatively and quantitatively, these protocols should be optimized for each specific case. In the present study we compared the effectiveness of approach to prepare decellularized ECM (dcECM) of adipose-derived MSC (adMSC): Triton X-100/NH4OH solution in phosphate buffered solution or H2O, and the possibility of using dcECM after spheroids were formed. ECM-derived substrates were analyzed with immunocytochemistry and scanning electron microscopy. During long-term culture, MSСs produced a well-developed EСM, which maintained a structure close to the native one after treatment with phosphate buffered solution of Triton X‑100/NH4OH. It was impossible to receive a uniform dcECM layer, when water solution of Triton X-100/NH4OH was used. On the scanning electron microscopy images single fiber of ECM were revealed in this case. Fragments of ECM and cells after spheroids formation with RGD peptides were detected. Therefore, this method was not effective for obtaining dcECM of adMSCs.

Moscow University Biological Sciences Bulletin. 2019;74(4):235-239
pages 235-239 views
Analysis of Element Composition of DNA-Protein Crystals In Vitro
Moiseenko A.V., Loiko N.G., Chertkov O.V., Feofanov A.V., Krupyanskii Y.F., Sokolova O.S.
Abstract

The universal response of Escherichia coli to stress is enhancing the synthesis of specific histone-like Dps proteins that bind bacterial DNA. As a result, two-dimensional and three-dimensional crystalline arrays can be observed in the cytoplasm of starving bacteria. Conditions for obtaining in vitro co-crystals of DNA-Dps were selected, and their elemental composition was studied using analytical electron microscopy. It was found that Dps in the co-crystal retains its ferritin-like activity; that is, it can stimulate the oxidation of Fe2+ ions to Fe3+ and facilitate the accumulation of iron in the form of Fe2O3 in the inner cavity of the oligomer.

Moscow University Biological Sciences Bulletin. 2019;74(4):240-245
pages 240-245 views
Effect of Acetylation of Histone H4 on Communication in Chromatin
Nizovtseva E.V., Gerasimova N.S., Studitsky V.M.
Abstract

Long-distance interaction plays an important role in the regulation of eukaryotic genes. Chromatin structure is involved in the process, but the role of histone modifications has not been studied. In the present work, the role of acetylation Н4K16 (Н4K16-Ac) to enhancer-promoter communication (EPC) was analyzed. This modification is associated with euchromatin and is involved in the decompaction of chromatin fibers. We have shown that the effect of H4K16-Ac on EPC in vitro depends on the level of chromatin assembly. EPC in chromatin, which lacks nucleosomes at random positions on DNA, is inhibited in the presence of H4K16-Aс. At the same time, EPC in chromatin, in which nucleosomes occupy all available positions on DNA, is somewhat stimulated in the presence of H4K16-Aс.

Moscow University Biological Sciences Bulletin. 2019;74(4):246-249
pages 246-249 views
Features of In Vitro Interaction of Osteoblast-Like MG-63 Cells with the Surface of Ti-Zr-Nb Shape Memory Alloys
Soldatenko A.S., Karachevtseva M.A., Sheremetyev V.A., Kudryashova A.A., Arkhipova A.Y., Andreev V.A., Prokoshkin S.D., Brailovski V., Moisenovich M.M., Shaitan K.V.
Abstract

The effect of the surface of Ti-Zr-Nb (TZN) shape memory alloys (SMA) on adhesion, proliferation, viability, and organization of the actin cytoskeleton of osteoblast-like MG-63 cells has been studied. The studied SMA have a unique combination of mechanical properties, making them promising in fabrication of bone implants with high biomechanical compatibility (due to low Young’s modulus and superelastic behavior similar to that of bone tissue). Thin sheets of the experimental TZN alloy and Ti-Al-Nb (TAN) medical alloy (as a control) are used in the study. Growth dynamics of MG-63 cell culture is assessed by the MTT assay and counting the number of nuclei per unit area. It is found that the number of cells cultured on TZN alloy is higher than on TAN alloy on the fourth and seventh days. This may be due to the influence of the qualitative and quantitative composition of the materials on the microstructure and chemistry of the surface. The cell viability during the cell culturing on both alloys is close to 100%. Image-based actin cytoskeleton analysis has shown the predominance of fibrillar actin on the TZN samples and has also revealed the cytoskeletal organization or structure typical of polygonal-shaped fibroblast-like cells.

Moscow University Biological Sciences Bulletin. 2019;74(4):250-255
pages 250-255 views
Carbon Dioxide Exchange of Woody Plants in Urban Ecosystems
Yuzbekov A.K., Zuxun W.
Abstract

The study of all factors that contribute to the carbon balance in the biosphere is of paramount importance due to the current increase in carbon dioxide content in the atmosphere. This article presents data on the carbon dioxide exchange for the needles of common spruce (Picea abies L.) and Douglas fir (Pseudotsuga menziesii L.) in an urban environment (based on the example of Moscow). It is established that the warm spell in autumn 2018 contributed to the prolongation of the period of carbon dioxide uptake by coniferous trees. Our analysis into the effect of environmental factors on the needle photosynthetic activity has revealed that the intensity of photosynthesis depends only on the level of illumination. The midday increase in air temperature failed to affect the photosynthesis intensity, which is probably explained by the adaptation of the plants to low night and morning air temperatures. A regression analysis has shown that the dependence of CO2 assimilation on illumination represented a logarithmic curve (with the approximation validity coefficient (R2) of 0.8). The effect of environmental conditions on conifer photosynthesis in autumn has proven to be species-specific. Common spruce was the most resistant to environmental factors: its photosynthetic activity was 1.4 times higher than that of Douglas fir. Calculations revealed that the level of CO2 assimilation was 3.6 and 2.7 times higher than the light respiration level for common spruce and Douglas fir, respectively, which indicates a positive carbon dioxide exchange and an important role of coniferous trees in regulating the carbon balance of an urban ecosystem.

Moscow University Biological Sciences Bulletin. 2019;74(4):256-261
pages 256-261 views

Short Communications

Demographic Approaches to the Study of Aging on Cell Cultures
Khokhlov A.N., Morgunova G.V., Klebanov A.A.
Abstract

Aging organisms die out in accordance with the “Gompertz law,” i.e., the probability of their death increases with age. Survival curve construction is the main tool for gerontologists to study aging and test antiaging drugs. The analysis of survival curves includes obtaining some indices characterizing aging of the population, for example, the average and maximum lifespan, the mortality rate, and the aging rate. Testing geroprotectors can be correctly performed only by obtaining such curves. The dying out of stationary cell populations—bacteria, yeast, and mammalian cell cultures—also occurs in accordance with the Gompertz equation. In this regard, it is reasonable to use the construction of survival curves and their analysis to study the “aging” of non-subcultured cell cultures and testing anti-aging drugs on them. We used this approach in our experiments, due to which we were able to detect the positive anti-aging effect of the Quinton Marine Plasma on stationary phase aging culture of Chinese hamster cells.

Moscow University Biological Sciences Bulletin. 2019;74(4):262-267
pages 262-267 views

This website uses cookies

You consent to our cookies if you continue to use our website.

About Cookies