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Vol 51, No 4 (2017)

Article

Bioinformatic search for Ca2+- and calmodulin-dependent protein kinases potentially associated with the regulation of plant cytoskeleton

Novozhylov D.O., Karpov P.A., Blume Y.B.

Abstract

The paper presents the results of a bioinformatic search for Ca2+- and calmodulin-dependent protein kinases from Arabidopsis thaliana, which may potentially participate in cytoskeleton regulation. Homologues were chosen based on their similarity with the calmodulin-dependent protein kinases from Homo sapiens and Mus musculus, which modulate the structure and dynamic behavior of the cytoskeleton. In total, the sequences for the catalytic domains of 41 animal protein kinases and their known 42 plant homologues have been aligned. The closest animal and plant homologues have been determined using the methods of phylogenetic clusterization. According to the bioinformatic research results, the following plant protein kinases were selected as the most probable regulators of the plant cytoskeleton: CPK7, CPK14, CPK32, CPK17, CPK34, CPK20, CPK27, CPK16, CPK18, CPK28, CPK7, CRK2, CRK4, and CRK6.

Cytology and Genetics. 2017;51(4):239-246
pages 239-246 views

Change of Mendelian ratios and meiotic recombination parameters in F1 hybrid tomatoes under the influence of γ-irradiation

Samovol O.P., Kornienko S.I., Kravchenko V.A., Kondratenko S.I.

Abstract

The effect of γ-irradiation treatment of seeds of intra- and interspecific F1 hybrid tomatoes on distortion of Mendelian monohybrid segregation, crossover variability, and recombination frequency of unlinked marker genes of chromosomes 2 and 6 was studied. It was found that more significant distortion effect on the segregation of marker loci of studied chromosomes was detected for seed treatment with 130 Gy. The significant direct relationship between Mendelian segregation for m-2 gene and a rfm-2c vaue for 60 Gy and for aw and m-2 genes and rfawc, awm-2 values for 60 and 130 Gy treatment in combination Mo500 × var. cerasiforme was revealed. The latter corresponds to the effect of “quasirepulsion.”

Cytology and Genetics. 2017;51(4):247-252
pages 247-252 views

Population genetic structure of veined rapa whelk communities in the northwestern Black Sea

Toptikov V.A., Totsky V.M., Alieksieieva T.G., Kovtun O.O.

Abstract

Spectra of isozymes encoded by alleles of eight different genetic loci have been analyzed in order to characterize the genetic structure of different rapa whelk communities in the northwestern part of the Black Sea. The distribution of genotypes and the corresponding alleles deviated significantly from that predicted by the Hardy-Weinberg equation in the case of four of the eight loci investigated. Rapa whelk communities investigated were characterized by slight predominance of heterozygotes over homozygotes, this being indicative of the absence of close inbreeding among the members of specific communities. F- and G-statistics and the calculation of genetic distances according to the method developed by Nei showed that genetic differentiation between rapa whelk communities from different aquatories was insignificant.

Cytology and Genetics. 2017;51(4):253-262
pages 253-262 views

Major mutation p.His281Tyr in Gene GLB1 in patients with GM1-gangliosidosis in Ukraine

Mytsyk N.Y., Olkhovych N.V., Gorovenko N.G.

Abstract

Mutation analysis of gene GLB1 in 26 patients from different regions of Ukraine diagnosed with GM1-gangliosidosis identified 15 pathogenic mutations. The most common was missense mutation p.His281Tyr (c.841C>T) in exon 8, which was found in at least one allele in 16 of 26 patients (61.5%), accounting for 20 of 52 (38.5%) mutant alleles. Mutation p.His281Tyr (c.841C>T) was described in rare cases in patients from Germany, Italy, and Portugal, while no alleles with such a replacement were found in other countries. This may indicate a much higher frequency of this mutation in Ukraine compared to other countries. Analysis of the information about the spatial distribution of the families with mutation p.His281Tyr (c.841C>T) revealed that most of the alleles with this mutation (14 of 20 or 70%) were found in patients from the western regions of the country, which may be due to the founder effect.

Cytology and Genetics. 2017;51(4):263-267
pages 263-267 views

A novel androgen receptor mutation in a patient with complete androgen insensitivity syndrome

Pylyp L.Y., Mykytenko D.O., Sudoma I.O., Zukin V.D.

Abstract

Androgen insensitivity syndrome (AIS) occurs when target tissues are resistant to the effect of androgens resulting in phenotype with varying degrees of feminization ranging from male infertility to completely normal female external genitalia in patients with male karyotype. Androgen receptor (AR) following activation by androgenic hormones binds to DNA in cells of target tissues and induces biological changes leading to differentiation and development of male urogenital structures. To date, more than 800 mutations in AR gene have been described in patients with AIS with the majority being located in the ligand-binding domain. Here a detailed description of a family with two affected 46,XY females with complete androgen insensitivity is provided. Whole exome sequencing revealed a novel mutation in exon 1 (c.238C>T) of AR gene. The mutation was detected in a proband and her sister, both with normal male karyotype and phenotypic expression of complete androgen insensitivity syndrome.

Cytology and Genetics. 2017;51(4):268-271
pages 268-271 views

Characteristics of the chromosome set of Holstein cows with reproductive disorders in the North-Caucasian cattle population

Trukhachev V.I., Oleynik S.A., Zlydnev N.Z., Morozov V.Y., Selionova M.I., Chizhova L.N., Skokova A.V.

Abstract

Increase in the degree of consanguinity of Holstein breed identified to the best-cultivated dairy breeds is one of the major ways to improve the genotypes of the dairy cattle in many countries all over the world. The widespread biotechnology and large-scale selection adoption reduced the range of the used bull sires in dairy stockbreeding, which resulted in the occurrence of different abnormalities associated with the inheritance caused by gene mutations and chromosomal disorders in the newborn calves. Since the main part of such abnormalities has a recessive inheritance pattern, they represent a hidden genetic load, which is not always expressed in a phenotype. In recent years, the cytogenetic and karyotyping approaches have become more widespread and are required for both the detailed theoretical prerequisites and the applied problem solutions to prevent losses in agricultural production. The results of the cytogenetic analysis of the North- Caucasian population of Holstein cows having problems in reproduction have been reported. The aberrant cells are detected (frequency of occurrence is 5.35%); the number of aberrations per analyzed cell (0.05/1.0) is determined; the absence of the reciprocal translocations in a karyotype in the analyzed livestock is revealed. The genealogical interrelations of ancestors of the lines of Montivik-Chifteyn no. 95679 and Reflekshn- Sovering no. 198998 bull sires with the values for stillbirth incidence among their progeny have been traced.

Cytology and Genetics. 2017;51(4):272-277
pages 272-277 views

Apoptosis and the processes of DNA fragmentation in native and cryopreserved human sperm cells with normo- and pathosperma

Petrushko M.P., Pavlovich E.V., Pinyaev V.I., Volkova N.A., Podyfaliy V.V.

Abstract

Cryopreserved human sperm is widely applied in the treatment of infertility using methods of assisted reproductive technologies. Comprehensive studies of the sperm condition after cryopreservation and subsequent cultivation will update the efficiency of the programs based on assisted reproductive technologies. The aim of this study was to investigate the effect of cryopreservation factors on the state of DNA and apoptotic processes in isolated human spermatozoa fractions in normo- and pathospermia. The analysis of DNA fragmentation and the assessment of apoptotic processes (human spermatozoa necrosis) were performed using the sperm chromatin dispersion test and the flow cytometry method. According to our study, sperm cryopreservation has not affected the DNA fragmentation index in normozoospermia and significantly increased it in oligoastenoteratozoospermia. The postcultivation increase of apoptotic and necrotic processes in oligoastenoteratozoospermia gives reason for choosing an alternative technique for oocyte fertilization— intracytoplasmic sperm injection.

Cytology and Genetics. 2017;51(4):278-281
pages 278-281 views

Possible role of polyphosphatases in yeast sensitivity to DCS-1800 electromagnetic fields

Voychuk S.I., Zelena L.B., Gromozova E.N., Pidgorskyi V.S., Dumansky V.Y., Bezverkhaya A.P.

Abstract

The ability of living organisms to perceive electromagnetic radiation is one of the most intriguing issues that concern the fundamental problem of interaction of living matter with the factors of physical nature. Polyphosphates can be possible receptors. The purpose of the study was to evaluate the role of the polyphosphatases PPN1 and PPX1 in the cell response to exposure to electromagnetic fields (EMFs) of 1871 MHz that were generated by DCS-1800 base stations. Six-week exposure at energy flux densities of 0.1–10 W/m2 was used. The corresponding values of specific adsorption rate (SAR) were 0.0075–1.5 W/kg. Electromagnetic radiation was found to lead to the impairment of a number of physiological and metabolic functions of cells, change their resistance to antibiotics, and result in irreversible changes in their genome. Low doses of the EMF caused the strongest biological responses. It was demonstrated that the deficiency in the ppn1 and ppx1 genes made the strains less adaptive, which resulted in an increase in their sensitivity to EMF exposure. Both polyphosphatases PPN1 and PPX1 were shown to be necessary for the normal cell response to the nonionizing electromagnetic radiation of 1871 MHz.

Cytology and Genetics. 2017;51(4):282-290
pages 282-290 views

Features of genetic variability in microsatellite DNA loci in the French Bulldog dog breed

Dzitsiuk V.V., Kruglyk S.G., Spiridonov V.G.

Abstract

Genetic variability in microsatellite markers PEZ1, PEZ3, PEZ6, PEZ8, FHC2010, and FHC2054 from a panel recommended by the International Society for Animal Genetics has been assessed for a micropopulation of dogs of the French Bulldog breed. The number and size of alleles, the number of alleles per locus, the effective number of alleles, the polymorphism index, expected and actual heterozygosity, and Wright’s fixation index have been determined to characterize each locus investigated. Deficit of heterozygous genotypes was observed in the micropopulation investigated, which is indicative of inbreeding. The relationship between the degree of homozygosity for six microsatellite loci and the degree of inbreeding has been analyzed. The results obtained point at a trend for increase of the relative abundance of homozygous loci upon an increase in the inbreeding coefficient of individuals.

Cytology and Genetics. 2017;51(4):291-295
pages 291-295 views

Genetic resources of chili pepper (Capsicum annuum L.) against Phytophthora capsici and their induction through various biotic and abiotic factors

Majid M.U., Awan M.F., Fatima K., Tahir M.S., Ali Q., Rashid B., Rao A.Q., Nasir I.A., Husnain T.

Abstract

Phytophthora capsici is the most destructive pathogen of vegetables that has blown a serious threat to chili pepper plants. We discussed the control of Phytophthora capsici through manipulation of genetic architecture of chili plant. Various genes encoding transcriptional regulatory and defense related putative proteins such as pathogen-related protein (PR), Anti-Microbial peptides (AMPs), Polygalacturonase-inhibiting proteins (PGIPs), Lipid Transfer Protein (LTP), Pectin Methylesterase (PME), Leucine-rich repeat proteins (LRRs), Osmotin-like and Thaumatin-like protein, have been identified in Capsicum. We also discussed the enhanced resistance to P. capsici infection by treatment with a variety of abiotic and biotic inducers that act on defense signaling pathways involved in disease resistance. We highlighted the vulnerability of chili crop with reference to its genetic resources against Phytophthora blight. Disease control through chemicals is becoming problematic, so we proposed other ways to control the disease severity.

Cytology and Genetics. 2017;51(4):296-304
pages 296-304 views

Identification of novel high molecular weight glutenin subunit mutants in bread wheat (Triticum aestivum L.)

Lombardo L.A., Nisi M.M., Salines N., Ghione C.E., Helguera M.

Abstract

Bread wheat (Triticum aestivum L.) is a staple food crop eaten in different ways like pan and other food products. High molecular weight glutenin subunits (HMW-GS) are major determinants of the different wheat end-use qualities. Ethyl-methanesulfonate (EMS) mutagenized populations in plants can be used for the discovery of valuable mutants for basic research and breeding purposes. In this study, we report the identification of 27 HMW-GS M3 mutants based on SDS-PAGE patterns from an EMS mutagenized population of the cultivar Baguette Premium 11. Nine mutations were detected in Ax2*, five in Bx7, four in By8, six in Dx5 and three in Dy10 subunit. Two Ax2* null mutants were characterized at molecular level finding in both cases premature stop codons associated. EMS would tend to generate more premature stop codons in glutenins genes than in others because these have a high frequency of glutamine codons. This type of mutation generates null alleles, therefore they are easily detectable by a low cost protocol like SDS-PAGE. The potential use of knock-out (null alleles) and SDS-PAGE size altered mutants for HMW-GS in wheat quality and nutrition is discussed.

Cytology and Genetics. 2017;51(4):305-314
pages 305-314 views

Karyotypic study of five Lutjanid species using conventional and Ag-NORs banding techniques

Phimphan S., Supiwong W., Tanomtong A., Pinthong K., Sangpakdee W., Kaewsri S.

Abstract

The first cytogenetic comparisons of five snapper species from Thailand were presented here. Renal cell samples were taken from blacktail snapper (Lutjanus fulvus), five lined snapper (L. quinquelineatus), dory snapper (L. fulviflamma), brownstripe red snapper (L. vitta), and mangrove red snapper (L. argentimaculatus). The mitotic chromosome preparation was prepared directly from kidney cells. Conventional staining and Ag-NOR banding techniques were applied to stain the chromosomes. The results exhibited that all five snapper species have the diploid chromosome numbers of 2n = 48 and the fundamental numbers (NF) of 48. The presences of large, medium, and small telocentric chromosomes were 22-24-2, 24-20-4, 36-10-2, 28-16-4 and 36-10-2, respectively. The Ag- NORs banding technique provides the pair of nucleolar organizer regions (NORs) at subcentromeric region of the long arm of the respective telocentric chromosome pairs 9, 1, 3, 4 and 9. Their karyotype formulas is as follows: L. fulvus (2n = 48): L22t + M24t + S2t, L. quinquelineatus (2n = 48): L24t + M20t + S4t, L. fulviflamma (2n = 48): Lt36 + Mt10 + St2, L. vitta (2n = 48): L28t + M16t + S4t, and L. argentimaculatus (2n = 48): L36t + M10t + S2t.

Cytology and Genetics. 2017;51(4):315-324
pages 315-324 views

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