Metagenomic microbial community profiling of Unnai hot spring by Ion-Torrent based shotgun sequencing
- Autores: Mangrola A.V.1, Dudhagara P.R.2, Koringa P.G.3, Joshi C.G.3, Patel R.K.4
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Afiliações:
- Department of Biochemistry
- Department of Biosciences
- Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
- Department of Life Sciences
- Edição: Volume 87, Nº 1 (2018)
- Páginas: 143-146
- Seção: Experimental Articles
- URL: https://journals.rcsi.science/0026-2617/article/view/163393
- DOI: https://doi.org/10.1134/S0026261718010113
- ID: 163393
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Resumo
This is the first report on depicting the pioneering microbiota of Unnai hot spring using shotgun metagenome sequencing approach. Community analysis encompassed a total of 688,059 sequences with the total size 125.31 Mbp and 46% G + C content. Sequencing metagenome reported about 992 species belonged to 40 different phyla dominated by Firmicutes (97.49%), Proteobacteria (1.36%), and Actinobacteria (0.31%). In functional analysis, Non-Supervised Orthologous Groups (NOG) annotation revealed the predominance of poorly characterized reads (82.79%). Moreover, the subsystem classification displayed 19% genes assigned to carbohydrates metabolism, 12% genes allocated to clustering-based subsystems, 10% genes belonged to amino acids and its derivatives. The result suggests the huge bacterial diversity which will be useful for further characterizing the economically important bacteria for biotechnological applications.
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Sobre autores
A. Mangrola
Department of Biochemistry
Autor responsável pela correspondência
Email: avmang@gmail.com
Índia, Anand, Gujarat
P. Dudhagara
Department of Biosciences
Email: avmang@gmail.com
Índia, Surat, Gujarat
P. Koringa
Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
Email: avmang@gmail.com
Índia, Anand, Gujarat
C. Joshi
Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
Email: avmang@gmail.com
Índia, Anand, Gujarat
R. Patel
Department of Life Sciences
Email: avmang@gmail.com
Índia, Patan, Gujarat
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