Metagenomic microbial community profiling of Unnai hot spring by Ion-Torrent based shotgun sequencing
- 作者: Mangrola A.V.1, Dudhagara P.R.2, Koringa P.G.3, Joshi C.G.3, Patel R.K.4
-
隶属关系:
- Department of Biochemistry
- Department of Biosciences
- Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
- Department of Life Sciences
- 期: 卷 87, 编号 1 (2018)
- 页面: 143-146
- 栏目: Experimental Articles
- URL: https://journals.rcsi.science/0026-2617/article/view/163393
- DOI: https://doi.org/10.1134/S0026261718010113
- ID: 163393
如何引用文章
详细
This is the first report on depicting the pioneering microbiota of Unnai hot spring using shotgun metagenome sequencing approach. Community analysis encompassed a total of 688,059 sequences with the total size 125.31 Mbp and 46% G + C content. Sequencing metagenome reported about 992 species belonged to 40 different phyla dominated by Firmicutes (97.49%), Proteobacteria (1.36%), and Actinobacteria (0.31%). In functional analysis, Non-Supervised Orthologous Groups (NOG) annotation revealed the predominance of poorly characterized reads (82.79%). Moreover, the subsystem classification displayed 19% genes assigned to carbohydrates metabolism, 12% genes allocated to clustering-based subsystems, 10% genes belonged to amino acids and its derivatives. The result suggests the huge bacterial diversity which will be useful for further characterizing the economically important bacteria for biotechnological applications.
作者简介
A. Mangrola
Department of Biochemistry
编辑信件的主要联系方式.
Email: avmang@gmail.com
印度, Anand, Gujarat
P. Dudhagara
Department of Biosciences
Email: avmang@gmail.com
印度, Surat, Gujarat
P. Koringa
Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
Email: avmang@gmail.com
印度, Anand, Gujarat
C. Joshi
Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
Email: avmang@gmail.com
印度, Anand, Gujarat
R. Patel
Department of Life Sciences
Email: avmang@gmail.com
印度, Patan, Gujarat
补充文件
