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Vol 59, No 1 (2018)

Article

Symbasis Between Formation Entalpies, Activation Energies of the Electrical Conductivity in Wüstite and in the Clusters of Its Crystal Lattice

Ermakov A.I., Horishko B.A.

Abstract

It is shown that formation enthalpy and activation energy of the electrical conductivity in stoichiometric wüstite can be estimated with the methods of quantum chemistry using the properties of its clusters. The clusters are represented by crystal lattice fragments with fixed or optimized geometric parameters. The formation enthalpy is determined by extrapolating the energy of clusters according to the formulas of simple theories of clusters. The activation energy of electrical conductivity is calculated from relative total energies of formula units for various spin states of wüstite clusters. Calculations were performed with efficient quantum chemical methods PM7 and PBE/sbk which were chosen according to test calculations of bonding and ionization energies for the ground states of the iron atom, its ions, and some of its compounds. The results are in satisfactory agreement with experimental literature data.

Journal of Structural Chemistry. 2018;59(1):1-10
pages 1-10 views

Forces in Molecules. New Quantum Relations

Novosadov B.K.

Abstract

New quantum-mechanical expressions are obtained for forces between the particles in molecules. A new interpretation of quantum transitions in molecular isomeric structures is proposed in terms of matrix elements of force operators.

Journal of Structural Chemistry. 2018;59(1):11-14
pages 11-14 views

Electronic Structure and Elastic Properties of ZnCdSe2 Crystal with the Chalcopyrite Structure

Basalaev Y.M., Sidorova A.V.

Abstract

A model of ZnCdSe2 crystal with the chalcopyrite structure is considered. Equilibrium parameters of crystal lattice and electronic structure of ZnCdSe2 crystal and its isostructural analogs ZnZnSe2 and CdCdSe2 were calculated from first principles. Characteristics of band structure and chemical bonding were studied in these crystals. Elastic constants, phase velocities of elastic waves, and basic elastic moduli were calculated.

Journal of Structural Chemistry. 2018;59(1):15-19
pages 15-19 views

Variation of the Intersection Point of the Potential Surface Crossing Induced by the Laser Phase Along the Reaction Path in Ion-Molecule Reactions: Application To Li+ + CH4

Tag El-Din Kamal M., Sedik E.S., Talaat H.

Abstract

A laser ion-molecule reaction interaction through both polarizability and dipole moment contribution leads to variation in the intersection point in potential energy surface crossings along the reaction path; the polarizability is maximum and the dipole changes its sign at s = 4 a.u., defining a virtual transition state. Using the gauge representation (electric field gauge) for a wave length λ = 20.6 μm, intensity I = 5×1012 W/cm2, I = 1×1013 W/cm2, I = 3×1013 W/cm2, we show here that we can create a laser-induced potential energy surface crossing along the reaction path (s = 7-8 a.u.). We illustrate such effects for the Li H + CH3+ ↔ Li+ + CH4 reaction which takes the form of inverted Morse (without a barrier) using ab initio methods for calculating the reaction path and electric properties of the ion-molecule reaction.

Journal of Structural Chemistry. 2018;59(1):20-27
pages 20-27 views

A Systematic Search for Structures and Stabilities of Asymmetric Clusters (HfInN3)n (n = 1-6)

Ma D.X., Xia Q.Y.

Abstract

In order to find single source precursors (SSP), the structures, relative stabilities, and IR spectra of small asymmetric clusters (HFInN3)n (n = 1–6) are systematically investigated by means of the density functional theory at the B3LYP level. The obtained geometries show that the frameworks of clusters (HFInN3)n (n = 2–6) prefer to be 2n-membered ring with alternating indium and α-nitrogen atoms. The averaged binding energies reveal that all of asymmetric clusters (HFInN3)n (n = 1–6) can continue to gain energy as the cluster size n increasing. The second-order difference of energy (Δ2E) and the HOMO-LUMO energy gap (Egap) as a function of the cluster size n both exhibit a pronounced even-odd alternation phenomenon. The influences of cluster size n and temperature T on the thermodynamic properties of clusters are discussed. Judged by enthalpies and Gibbs free energies, the formations of the most stable clusters (HFInN3)n (n = 2–6) from the monomer are thermodynamically favorable in the range of 200–800 K.

Journal of Structural Chemistry. 2018;59(1):28-35
pages 28-35 views

Crystallographic and Computational Studies on N-Furfuryl-N-(3-Hydroxybenzyl)amine and N-Furfuryl-N-(4-Hydroxybenzyl)amine

Sathiyaraj E., Thirumaran S., Ciattini S.

Abstract

Crystal structures of N-furfuryl-N-(3-hydroxybenzyl)amine (1) and N-furfuryl-N-(4-hydroxybenzyl)amine (2) are reported. The furyl ring is coplanar with the C–N–C plane in 1 and perpendicular to the C–N–C plane in 2. Intermolecular O–H ⋯ N and C–H ⋯ O hydrogen bonds stabilize the crystal structures and play a crucial role in crystal packing. In addition, the molecular geometry and molecular vibrations are calculated using the DFT/B3LYP method with the 6-31G(d,p) basis set and the calculated geometrical parameters are correlated with the corresponding experimental data. The obtained HOMO and LUMO energies are negative, indicating that the compounds are in the stable state. FT-IR spectra of compounds 1 and 2 are measured in order to elucidate the spectroscopic properties of the compounds in the spectral range 4000–500 cm−1. The recorded FT-IR spectral measurements are further supported by spectral simulations.

Journal of Structural Chemistry. 2018;59(1):36-42
pages 36-42 views

A Quantum Chemical Study of the Acidity of Acetylene and 1,2-Dihydrobuckminsterfullerene Derivatives

Makarova M.V., Semenov S.G., Kostikov R.R.

Abstract

DFT PBE0/cc-pVDZ method and the polarizable continuum model were used to determine pKa values for buckminsterfullerene-acetylene hybrids C60HCCH, C60HCN, tert-butylacetylene, and propyne relative to tert-BuC60H in a vacuum, carbon disulfide, tetrahydrofuran, and dimethyl sulfoxide. The energies of the СH-acid molecule and the carbanion (fulleride- or acetylide anion) were calculated using the same number of Gaussian orbitals. The surfaces of cavities formed by molecules and anions in a solvent are composed of spheres encompassing both atomic nuclei and lone electron pairs. An additional sphere excludes the solvent from the inner cavity of the fullerene.

Journal of Structural Chemistry. 2018;59(1):43-46
pages 43-46 views

Ion Mobility In Complex Antimony(III) Sulfate Fluorides M6Sb4(SO4)3F12 (M = Rb, Cs, NH4) and (NH4)2Sb(SO4)F3 According to 19F and 1Н NMR Data

Kavun V.Y., Zemnukhova L.A., Polyantsev M.M.

Abstract

19F and 1Н NMR methods were used to study ion mobility in M6Sb4(SO4)3F12 (M = Rb, Cs, NH4) and (NH4)2Sb(SO4)F3 complex antimony(III) sulfate fluorides with alkali cations and ammonium. The types of ionic mobility in these compounds were identified at 150–470 K.

Journal of Structural Chemistry. 2018;59(1):47-52
pages 47-52 views

Characterization and Thermal Study of Schiff-Base Monomers and Its Transition Metal Polychelates and Their Photovoltaic Performance on Dye Sensitized Solar Cells

Al-Barody S.M.

Abstract

Azo dye monomer 4,4′-(4,4′-biphenylylenebisazo)-disalicylaldehyde-4n-butylphenyl aniline (H2A) is synthesised by the reaction of 4,4′-bis[(salicylaldehyde-5)-azo]biphenyl (Azo) and n-butylaniline in the 1:2 molar ratio and its metal polychelates are also synthesized with Co(II), Ni(II), Cu(II), and Zn(II) metal ions. The synthesized compounds are characterized by 1H, 13C NMR, Fourier transform infrared (FT-IR) spectroscopy, electronic spectra (UV-Vis), elemental analysis (C, H, N, O), gas chromatography-mass (GCmass) spectrometry, magnetic susceptibility and molar conductivity techniques. Thermal properties of the title compounds are studied using the thermogravimetric analysis (TGA). The metal molar ratio in all of the polychelates is found to be consistent with 1:1 (metal/ligand) stoichiometry. The influence of organic dyes H2A and the [CuA(H2O)2]n polychelate are investigated as photosensitizers on the photovoltaic parameters by current–voltage (I–V) measurements on TiO2 photoelectrode dye sensitized solar cells (DSSCs). The [CuA(H2O)2]n metal polychelate demonstrates the best performance as compared to the cell sensitized with H2A.

Journal of Structural Chemistry. 2018;59(1):53-63
pages 53-63 views

The Atomic Structure of Cu(II) Acetate-Bipyridine Under Thermal Decomposition: An X-Ray Spectroscopy Study

Kremennaya M.A., Budnyk A.P., Soldatov M.A., Lastovina T.A., Soldatov A.V.

Abstract

A number of experimental techniques were used to study the changes in the atomic structure of copper(II) acetate-bipyridine under thermal decomposition between 25°C and 700°C to form copper-containing nanoparticles. The dynamics of structural changes during decomposition in a thermogravimetric chamber is compared with X-ray absorption spectra, IR spectra, and diffraction patterns for a sequence of annealing temperatures. The experimental results were used to construct theoretical structural models of the complex under thermal decomposition.

Journal of Structural Chemistry. 2018;59(1):64-70
pages 64-70 views

Theoretical and Experimental Investigation of the 2-Hydroxyquinoxaline Structure: Study of the Tautomerization Equilibrium System and Analysis of the Electronic Properties

Makhloufi A., Ghemit R., Baitiche M., Merbah M.

Abstract

All reasonable tautomers of 2-hydroxyquinoxaline (2HQ) are investigated by the DFT B3LYP/6-311G(d) method. The optimized geometries corresponding to the minimum energy show that the keto form QX2 is the most stable form. The geometry optimization parameters (bond lengths, bond angles) are compared to the X-ray values. Calculated FTIR, UV, and NMR spectra of QX2 are compared to the experimental data to achieve a synergetic computational and spectroscopic approach for the structure analysis of 2HQ. The electronic properties, frontier molecular orbitals, and Mulliken atomic charges are calculated.

Journal of Structural Chemistry. 2018;59(1):71-79
pages 71-79 views

Molecular Relaxation of Binary Systems LiNO3–LiClO4, NaNO3–NaNO2, K2CO3–K2SO4

Aliev A.R., Akhmedov I.R., Kakagasanov M.G., Aliev Z.A., Amirov A.M.

Abstract

Molecular relaxation in binary systems LiNO3–LIClO4, NaNO3–NaNO2, and K2CO3–K2SO4 is studied using Raman spectroscopy. The relaxation time of ν1(A) vibrations for NO3 and CO32− anions is found to be shorter in LiNO3–LIClO4, NaNO3–NaNO2, K2CO3–K2SO4 than in LiNO3, NaNO3, K2CO3, respectively. Higher relaxation rate is explained by additional relaxation of excited vibrational states. This mechanism is associated with vibrational excitation of the second anion ( ClO4, NO2, SO42− ) and “production” of a lattice phonon. This relaxation mechanism is possible when the difference between the frequencies of these vibrations falls into the region of fairly high density of states of the phonon spectrum.

Journal of Structural Chemistry. 2018;59(1):80-86
pages 80-86 views

Crystal Structure, Spectroscopic and Magnetic Properties of Trans-Difluoro-(1,4,8,11-Tetraazaundecane)Chromium(III) Aquatrichlorozincate

Moon D., Tanaka S., Akitsu T., Choi J.

Abstract

A new complex salt trans-[CrF2(2,3,2-tet)][ZnCl3(H2O)] (2,3,2-tet is 1,4,8,11-tetraazaundecane), is prepared and its structure is determined by single crystal X-ray diffraction using synchrotron data at 100 K. The complex crystallizes in the space group P21/c of the monoclinic system with two mononuclear formula units in a cell with dimensions a = 5.6360(11) Å, b = 17.120(3) Å, c = 17.020(3) Å, and β = 94.38(3)°. The chromium(III) ion is coordinated by four N atoms of the 2,3,2-tet ligand in the equatorial plane and two F atoms in a trans axial arrangement, displaying a slightly distorted octahedral geometry. The mean Cr–N(2,3,2-tet) and Cr–F bond distances are 2.0772(11) Å and 1.8930(8) Å, respectively. The crystal packing is stabilized by hydrogen bonding interactions between N–H groups of the 2,3,2-tet, O–H groups of the anion, the F atom, and the Cl atom of the anion. The FT-infrared, UV-visible spectra, and magnetic properties are also described.

Journal of Structural Chemistry. 2018;59(1):87-95
pages 87-95 views

Determination of the Boundary Surface Between the Lipid Bilayer and Water

Voloshin V.P., Kim A.V., Shelepova E.A., Medvedev N.N.

Abstract

Profiles of various membrane characteristics are traditionally calculated from the middle plane of the membrane towards the surface. In this approach, atomic positions near the membrane surface are determined inaccurately because, strictly speaking, the membrane is nonplanar and can have unevennesses or a variable thickness. However, the profile can also be calculated from the membrane surface. We propose to use the Voronoi boundary surface (a set of adjacent faces of Voronoi regions of membrane atoms and surrounding water) as this surface. It naturally divides the space between the membrane and water. Atomic density and empty intermolecular space profiles calculated relative to this surface reveal new features not seen when the middle plane is used.

Journal of Structural Chemistry. 2018;59(1):96-105
pages 96-105 views

Structural Diversity of Metal-Organic Hydrates: A Crystallographic Structural Database Study

Siddiqui K.A.

Abstract

Different hydrogen bonding configurations (0+1, 1+0, 1+2, 2+0, 2+1, 2+2) of lattice water molecules are identified through the crystal database mining. The reported patterns help propagate the discrete molecular complexes into 1D, 2D, and 3D metal-organic architectures.

Journal of Structural Chemistry. 2018;59(1):106-113
pages 106-113 views

Crystallographic Basis for the Stability of Abundant (Popular) Structure Types

Borisov S.V., Pervukhina N.V., Magarill S.A.

Abstract

In compliance with the hypothesis that the crystal structure stability increases with a decrease in the degrees of freedom of the constituent atoms, we propose quantitative criteria for structures: the ratio between the amount of the degrees of freedom of atoms to their number in a primitive cell (S) and the fundamental volume (V*)–the quotient of the cell volume (asymmetric unit) and the order of the symmetry group (M) that is the general position multiplicity. The crystallographic analysis of diamond and spinel structure types and their comparative analysis with stability and packing criteria are performed. The study uses the findings from the analysis of abundant less symmetrical tourmaline and apatite structure types which confirm the existence of standard frameworks–symmetrical spatial configurations of atomic sites that can be taken by atoms of various types.

Journal of Structural Chemistry. 2018;59(1):114-119
pages 114-119 views

Broken Symmetry Group in the Octahedral [Me(urea)6]2+, 3+ Cation With Chelate Hydrogen Bonds

Rau V.G., Rau T.F., Lomtev L.A., Nikitin O.R.

Abstract

The work reports the study of broken symmetry groups of non-classical substitutions in real heterocomplex compounds with carbamide found in the description of cations with directed hydrogen bonds. Examples of the respective groups of products of non-classical substitutions are considered for the model structures. In the computer experiment, the examination of tables of binary transformations with broken symmetry discovered sets of transformations (“evolutionary trees”) with convergent and divergent properties of the structure orgraph that have not been previously studied.

Journal of Structural Chemistry. 2018;59(1):120-125
pages 120-125 views

Crystal Structure of Tl2[NbCl6] and Tl2[NbBr6]

Sokolov M.N., Rogachev A.V., Virovets A.V., Bogomyakov A.S.

Abstract

Single crystals of Tl2[NbCl6] (1) and Tl2 [NbBr6] (2) are obtained as black needles on heating TlCl, Nb, S2Cl2 (1) and Tl, Nb, and Br2 at 400°C (2). Tl2NbBr6 also forms in the reaction of TlBr, Nb, Br2, and S at 500°C. Both compounds crystallize in the K2[PtCl6] structure type to form non-distorted octahedral [NbХ6]2– anions (Nb–Cl 2.397(4) Å and Nb–Br 2.516(2) Å). The magnetic properties of Tl2[NbBr6] in a range 5-300 K indicate an antiferromagnetic interaction between Nb4+ ion spins (d1, S = 1/2). On cooling, the compound becomes a noncollinear ferromagnet with Tc = 23 K.

Journal of Structural Chemistry. 2018;59(1):126-130
pages 126-130 views

Crystal Chemistry Study of Two Magnesium Complexes with Trifluoroacetylacetone

Kuratieva N.V., Vikulova E.S., Zherikova K.V.

Abstract

Single crystal X-ray diffraction at a temperature of 150(2) K is used to determine the structures of two magnesium complexes with trifluoroacetylacetone: [Mg(tfac)2]3I and [Mg(H2O)2(tfac)2]·H2O II. Crystallographic data for I: space group P21/n, a = 12.5226(10) Å, b = 13.0591(7) Å, c = 12.6034(13) Å, β = 95.243(2)°, V = 2052.5(3) Å3, Z = 2; for II: space group P21/c, a = 10.826(2) Å, b = 7.0742(13) Å, c = 21.858(4) Å, β = 102.712(5)°, V = 1632.9(5) Å3, Z = 4. The isle structure of I is formed by linear trimeric molecules; in the structure of II the molecules of the complex and crystallization water form a layered framework using hydrogen bondings; the coordinated water molecules are in a trans position. The magnesium atoms have a distorted octahedral coordination environment, the Mg–O distances are 1.991(4)- 2.146(4) Å and 2.040(5)-2.073(5) Å in molecules of I and II respectively.

Journal of Structural Chemistry. 2018;59(1):131-135
pages 131-135 views

Crystal Structure of Binuclear Cobalt Complexes [(Cp′′′Co)2212-S2)2] and [(Cp′′′Co)2212-Se2)2]

Afonin M.Y., Sukhikh T.S., Konchenko S.N.

Abstract

Binuclear cobalt complexes [(Cp′′′Co)2212-S2)2] (1) (Cp′′′ = η5-1,2,4-tris(tert-butyl)cyclopentadienide) and [(Cp′′′Co)2212-Se2)2] (2) are obtained by the interaction of [(Cp′′′Co)2(μ-η44-C7H8)] with excess sulfur or selenium respectively. The structures of the complexes are determined by single crystal X-ray diffraction.

Journal of Structural Chemistry. 2018;59(1):136-139
pages 136-139 views

Characterization and Crystal Structure of a Novel Mononuclear Cobalt(II) Complex with Hydrazone Derived from Protocatechuic Acid

Sheng G., Wang C., Feng S., Gao X., Zhu H.

Abstract

A novel complex [CoII(L)2·CH3OH] with hydrazone derived from protocatechuic acid (HL=C16H14N2O4) is designed and synthesized. The complex is characterized by single crystal X-ray diffraction, elemental analysis, IR, and thermal gravimetric analysis. The complex crystallizes in the monoclinic space group C2/c, with unit cell dimensions a = 25.1715(11), b = 9.3518(4), c = 12.8700(6) Å, β = 103.6530(10)°, V = 2943.98(75) Å3, Z = 4, R1 = 0.0612, and wR2 = 0.1439.

Journal of Structural Chemistry. 2018;59(1):140-144
pages 140-144 views

Nickel Decatungstate [Ni(C2H6SO)5(H2O)]2[W10O32]: Synthesis from a Water-Dimethylsulfoxide Solution, Crystal Structure Determination, IR and Raman Spectroscopic Analysis, Surface Micromorphology

Poimanova E.Y., Medved’ A.O., Radio S.V., Baumer V.N., Arzumanyan G.M., Doroshkevich N.V., Khomutova E.V., Belousova E.E., Rozantsev G.M., Panyushkin V.T.

Abstract

Crystalline nickel(II) decatungstate (II) [Ni(C2H6SO)5(H2O)]2[W10O32] is synthesized for the first time and characterized by chemical and thermal analyses, scanning electron microscopy, IR and Raman spectroscopy, and single crystal X-ray diffraction (XRD). By single crystal XRD the crystallographic characteristics of [Ni(C2H6SO)5(H2O)]2[W10O32] are determined (triclinic crystal system, space group P–1, a = 11.9339(7) Å, b = 12.2083(6) Å, c = 12.2083(6) Å, α = 75.235(5)°, β = 71.289(6)°, γ = 87.785(4)°, V = 1692.44(17) Å3 at T = 293(2) K, Z = 1, dx = 3.223 g/cm3) and the structure is found to be composed of isolated [Ni(C2H6SO)5(H2O)]24+ cation complexes and [W10O32]4– anions located in the voids between the cation complexes. By the powder XRD analysis it is shown that the crystals formed by growing from the solution do not contain impurities.

Journal of Structural Chemistry. 2018;59(1):145-153
pages 145-153 views

Structure of the {[Cu2Ge(μ-Cit)2(μ-INH)2]·4H2O}n Coordination Polymer Where H4Cit is Citric Acid, INH is Isonicotinic Acid Hydrazide

Seifullina I.I., Martsinko E.E., Chebanenko E.A., D’yakonenko V.V., Shishkina S.V., Pirozhok O.V.

Abstract

The {[Cu2Ge(μ-Cit)2(μ-INH)2]·4H2O}n (I) complex, where H4Cit is citric acid, INH is isonicotinic acid hydrazide, is synthesized for the first time and characterized by a set of physical and chemical analysis techniques. According to X-ray crystallography, I is a three-dimensional heteronuclear Cu–Ge coordination polymer with a completely deprotonated form Cit4– of citric acid. Both ligands are bridging and the framework structure of the complex is formed.

Journal of Structural Chemistry. 2018;59(1):154-159
pages 154-159 views

Structural Characterization of Two Copper Complexes with 2-Arylidenebenzocycloalkanone Ligands

Wang G., Sun S., Wang Y.

Abstract

Two copper complexes Cu(tta)2(L1)2 (1) and Cu(tta)2(L2)2 (2) are synthesized and characterized by IR spectroscopy, elemental analysis, and single crystal X-ray diffraction. The copper(II) ion of 1 and 2 is in a distorted octahedral environment with four O atoms of the tta ligands and two N atoms of the heterocyclic ligands. The hydrogen bonds play important roles in stabilizing the structures.

Journal of Structural Chemistry. 2018;59(1):160-165
pages 160-165 views

First Orotic Acid and Isonicotinic Acid Based Zn Complex: Hydrothermal Synthesis, Crystal Structure, and Thermogravimetric Analysis

Siddiqui K.A., Lama P.

Abstract

New supramolecular synthon induced complex [Zn(Hor)(Hiso)·3H2O]·H2O (1) is obtained in a selfassembly reaction of zinc nitrate with orotic (H3Or, 1,2,3,6-tetrahydro-2,6-dioxo-4-pyrimidinecarboxylic) acid and isonicotinamide. The isonicotinamide molecule is hydrolyzed in-situ into isonicotinic (Hiso, pyridine-4-carboxylic) acid. A detailed structural analysis and the role of hydrogen bonding synthons in deciding the overall structural diversity is discussed. The {…H–N–C=O…}2 and {…H–O–C=O…}2 dimers play an important role in the metal-organic architecture of 1. Complex 1 is insoluble in almost all organic solvents as well as in water. The complete decomposition of the compound is achieved above 445°C.

Journal of Structural Chemistry. 2018;59(1):166-171
pages 166-171 views

Structural Packing Features of [ML2](ReO4)2 (M = Cu, Ni; L = 5,5,7,12,12,14-Hexamethyl-1,4,8,11-Tetraaza-Cyclotetradecane)

Bykova E.A., Khranenko S.P., Gromilov S.A.

Abstract

The crystal structures of [CuL2](ReO4)2 and [NiL2](ReO4)2 (L = 5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraaza-cyclotetradecane) are studied. The crystal structural data for [CuL2](ReO4)2, C16H32CuN4O8Re2: a = 13.5523(7) Å, b = 9.3446(4) Å, c = 18.4410(9) Å, V = 2335.38(19) Å3, space group Pbca, Z = 4, dx = 2.402 g/cm3; the copper atom coordination C–N of (2×)1.973(5) Å and (2×)2.008(5) Å, the additional coordination Cu…O of (2×)2.642 Å. The crystal structural data for [NiL2](ReO4)2, C16H32NiN4O8Re2: a = 8.9308(2) Å, b = 14.3479(3) Å, c = 18.6501(4) Å, β = 91.492(1)°, V = 2388.98(9) Å3, space group P21/c, Z = 4, dx = 2.334 g/cm3; the nickel atom coordination Ni–N of 1.889(4)-1.917(3) Å, the additional coordination Ni…O of 2.750(3) Å.

Journal of Structural Chemistry. 2018;59(1):172-176
pages 172-176 views

Structure and Luminescent Properties of Cluster Complexes with the {Mo63-SeCl7)}3+ Core

Mikhailov M.A., Virovets A.V., Peresypkina E.V., Brylev K.A., Sokolov M.N.

Abstract

The selenium atom substitution for one of the capping chloride ligands in [Mo63-Cl8)Cl6]2– under the action of H2Se in situ results in a [Mo63-SeCl7)Cl6]3– cluster which is isolated and structurally characterized in the form of (Bu4N)3[Mo63-SeCl7)Cl6] (I). In the acetonitrile solution the complex exhibits luminescence (λmax = 775 nm, τem = 1.8 μs, Φem = 0.004). When the solution of I in acetonitrile is heated, a partial solvolysis product of the composition (Bu4N)2[Mo63-SeCl7)Cl5(CH3CN)] (II) is isolated and structurally characterized.

Journal of Structural Chemistry. 2018;59(1):177-181
pages 177-181 views

A Neutral Dinuclear Silver(I) 4′-Phenyl-Terpyridine Compound

Huang Y., Wang Q., Ma Z.

Abstract

A hydrothermal reaction between 4′-phenyl-terpyridine (L), silver(I) salt (silver nitrate), and disodium terephthalate led to the formation of the [Ag22-OCOC6H4OCO)L2] complex. Its structure is determined by single crystal X-ray diffraction and confirmed by 1H NMR and IR. The compound features a dinuclear neutral {Ag22-OCOC6H4OCO)} core in which each Ag+ ion is coordinated by three nitrogen atoms from the terpyridine ligand and one oxygen atom from the carboxylic group of terephthalate, forming an irregular AgN3O square coordination geometry with a separation of 11.3301(5) Å between the two silver ions.

Journal of Structural Chemistry. 2018;59(1):182-187
pages 182-187 views

Crystal and Molecular Structure of a Platinum(II) Complex with β-Mercaptoethylamine Hydrochloride

Azizova A.N., Tagiev D.B., Osmanova S.N., Kasumov S.G., Gasanov K.I.

Abstract

The work describes in detail the structure of a coordination platinum(II) compound with the sulfur-and nitrogen-containing biologically active β-mercaptoethylamine ligand NH2CH2CH2SH which deprotonates during synthesis and acts simultaneously as a chelating and bridging ligand resulting in the formation of the hexanuclear [Pt6(NH2CH2CH2S)8]Cl4·3H2O complex of a non-cluster type. Depending on the conditions, in particular, medium pH, complexes with different nuclearities and hydration numbers can form in this system.

Journal of Structural Chemistry. 2018;59(1):188-192
pages 188-192 views

Crystal Structure of Binuclear Bismuth Complex [H2dabco]2[Bi2Br10]·4H2O

Kovalenko E.A., Kochelakov D.V., Samsonenko D.G., Fedin V.P.

Abstract

Binuclear bismuth complex [H2dabco]2[Bi2Br10]·4H2O is obtained by heating the solution of bismuth bromide with diazabicyclo[2.2.2]octane in 2 M HBr. The structure of the complex is determined by single crystal X-ray diffraction. The compound is characterized by IR and Raman spectroscopy, powder X-ray diffraction, and elemental analysis.

Journal of Structural Chemistry. 2018;59(1):193-196
pages 193-196 views

Structure of 2-(benzoxazole-2-Yl)- 5,7-di(tert-butyl)-4-nitro-1,3-tropolone

Minkin V.I., Tkachev V.V., Sayapin Y.A., Tupaeva I.O., Gusakov E.A., Shilov G.V., Aldoshin S.M.

Abstract

The reaction of 2-methylbenzoxazole with 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone yields 2-(benzoxazole-2-yl)-5,7-di(tert-butyl)-4-nitro-1,3-tropolone. The structure of 2-(benzoxazole-2-yl)-5,7-di(tert-butyl)-4-nitro-1,3-tropolone is determined by the single crystal X-ray diffraction analysis.

Journal of Structural Chemistry. 2018;59(1):197-200
pages 197-200 views

Disordering of the Crystal Structure of Cellulose Under Mechanical Activation

Podgorbunskikh E.M., Bychkov A.L., Bulina N.V., Lomovskii O.I.

Abstract

The present paper describes the study of the effect of mechanochemical activation on the amorphization process of individual α-cellulose and native cellulose being a constituent part of the lignocellulosic material in the form of partially crystalline fibrils. In processing the powder X-ray diffraction data the following methods are used to determine the degree of crystallinity of cellulose: Segal’s, Rietveld’s, and Lorentzian deconvolution. It is demonstrated that mechanical activation of individual α-cellulose in an AGO-2 laboratory planetary ball mill with a shock-shear action results only in grinding and amorphization, while the degree of amorphization increases propotionally to the duration of the power supply. When α-cellulose is treated in an RM-20 flow-through centrifugal roller mill with a shear action, particle agglomeration is observed together with amorphization. When a lignocellulosic material (wheat straw) is treated in a centrifugal roller mill, considerable amorphization occurs only at high energies, and no particle agglomeration is observed.

Journal of Structural Chemistry. 2018;59(1):201-208
pages 201-208 views

Crystal Structures of Two Luminescent Mononuclear and dinuclear cyclopalladated 2-(4-Ethylphenyl)pyrazine complexes

Li H.M., Wang Z.Q., Fu W.J., Xu C.

Abstract

Two mononuclear and dinuclear cyclopalladated 2-(4-ethylphenyl)pyrazine (epp) complexes 2 and 3 are prepared in the bridge-splitting reactions of palladacyclic dimer 1 with PPh3 (2) and 1,4- bis(diphenylphosphino)butane (dppb) (3). Their crystal and molecular structures are determined by the single crystal X-ray analysis. C–H⋯N(Cl) hydrogen bonds and π⋯π interactions are found in the the crystals.

Journal of Structural Chemistry. 2018;59(1):209-213
pages 209-213 views

X-Ray Crystal Structure of a Novel 2D Mn(II) Coordination Polymer with 4,4′-trimethylenedipyridine and 3-nitrophthalate as Ligands

Chooset S., Kantacha A., Nimthong A., Zeller M., Wongnawa S.

Abstract

[Mn2(μ-4,4′-trimethylenedipyridine)(μ-3-nitrophthalate)2(H2O)4]n is synthesized using MnCl2·4H2O, 4,4′-trimethylenedipyridine, and 3-nitrophthalic acid as starting materials. The complex is investigated by Fourier transform infrared spectroscopy, single crystal X-ray diffraction, elemental analysis, powder X-ray diffraction, diffused reflectance spectroscopy, photoluminescent spectroscop, and thermogravimetric analysis. The complex crystallizes in the orthorhombic system in the space group Aba2 with cell parameters a = 30.1451(10) Å, b = 9.8718(3) Å, c = 11.3258(4) Å, V = 3370.40(19) Å3, and Z = 4. The complex exhibits a 2D structure with each Mn(II) atom octahedrally coordinated to three oxygen atoms from two 3-nitrophthalate units, two oxygen atoms from two water molecules, and one nitrogen atom from 4,4′- trimethylenedipyridine.

Journal of Structural Chemistry. 2018;59(1):214-221
pages 214-221 views

Crystal Structure Of a 2D Cadmium(II) Coordination Polymer Containing a Flexible bis(imidazole) Ligand

Cheng J., Wang G., Wang Y.

Abstract

A new coordination polymer {[Cd(mbix)(nip)·H2O]·0.25H2O}n (mbix = 1,3-bis(imidazol-1-ylmethyl)benzene, H2nip = 5-nitroisophthalic acid) is hydrothermally synthesized and characterized by elemental analysis, IR spectroscopy, and single crystal X-ray diffraction. The complex crystallizes in the monoclinic system, space group P21/c, a = 10.328(1) Å, b = 26.683(3) Å, c = 8.6612(8) Å, β = 107.462(1)°, V = 2276.9(4) Å3, Z = 4, Dc = 1.699 g/cm3, μ = 1.015 mm−1, F(000) = 1170, the final R = 0.0469 and wR = 0.0833. The complex exhibits a 2D (4,4) grid with point symbol 44.62. The thermogravimetric curve of the complex was addressed.

Journal of Structural Chemistry. 2018;59(1):222-226
pages 222-226 views

Crystal Structure of a 1D Silver(I) Coordination Polymer Containing Flexible bis(benzimidazole)

Cui J.W., Wang S.C., Wang Y.Y., Dong G.Y.

Abstract

An Ag(I) coordination polymer {[Ag(L)(Htbip)]}n (H2tbip = 5-tert-butylisophthalic acid, L = 1,1-(1,4- butanediyl)bis-1H-benzimidazole) is synthesized and characterized by the elemental analysis, infrared spectroscopy, thermogravimetric analysis, and single crystal X-ray diffraction. It crystallizes in the monoclinic space group P21/c, a = 18.2755(13), b = 8.8515(6), c = 18.4000(13) Å, β = 104.9200(10)°, V = 2876.1(3) Å3, Z = 4, C30H31,AgN4O4, Mr = 619.46, Dc = 1.431 g/cm3, μ = 0.742 mm−1. The structural analyses display that this compound has a 1D zigzag chain structure which is further extended into a 3D supramolecular framework through O–H⋯O hydrogen bond interactions. The complex can be stable up to 215°C.

Journal of Structural Chemistry. 2018;59(1):227-230
pages 227-230 views

Crystal and Molecular Structure, and Cytotoxic Activity of diethyl ether of 2-[(phenyl-(phenyl-o-carboranyl)- methyl]malonic acid

Suleimen E.M., Kazantsev A.V., Van Hecke K., Iskakova Z.B., Akatan K.

Abstract

The crystal and molecular structure of diethyl ether of 2-[(phenyl-(phenyl-o-carboranyl)-methyl]malonic acid is determined by single crystal X-ray diffraction and NMR spectroscopy for the first time. The cytotoxic activity of the molecule is analyzed.

Journal of Structural Chemistry. 2018;59(1):231-234
pages 231-234 views

Molecular Modeling, Spectroscopic Investigations, and Computational Studies of DMSO solvated 7′-amino-1′,3′-dimethyl-2,2′,4′-trioxo-1′,2′,3′,4′,4a′,8a′-tetrahydrospiro[indoline-3,5′-pyrano[2,3-d]pyrimidine]-6′-carbonitrile

Sharma S., Brahmachari G., Kumar A., Misra N., Kant R., Gupta V.K.

Abstract

A combined experimental and theoretical study is performed on DMSO solvated 7′-amino-1′,3′-dimethyl- 2,2′,4′-trioxo-1′,2′,3′,4′,4a′,8a′-tetrahydrospiro[indoline-3,5′-pyrano[2,3-d]pyrimidine]-6′-carbonitrile. The compound is studied by NMR, IR spectroscopy, and single crystal X-ray analysis. The crystal structure of the molecule is stabilized by intermolecular N–H…N, N–H…O, and C–H…π interactions. In the crystal, the molecules form hydrogen-bonded chains running along the b axis of the unit cell. In the present work, we have applied density functional theory (DFT) to explore the nonlinear properties of the molecule. The harmonic vibrational frequencies are calculated and compared with experimental FT-IR frequencies. The observed and calculated frequencies are found to be in good agreement. The calculated values of the HOMO-LUMO energy gap shows that a charge transfer occurs within the molecule.

Journal of Structural Chemistry. 2018;59(1):235-244
pages 235-244 views

Solvent Effects on the Structure And Spectroscopic Properties of the Second-Generation Anticancer Drug Carboplatin: A Theoretical Insight

Rezazadeh M., Ghiasi R., Jamehbozorgi S.

Abstract

In this investigation, the structural, electronic, and spectroscopic properties of the anticancer active molecule, carboplatin, were investigated in gas and solution phases. Based on the polarizable continuum model (PCM), the solvent effect on the structural parameters, frontier orbital energies, and spectroscopic parameters of the complex were explored. The results specify that the solvent polarity plays a significant role in the properties of the complex. The calculated vibrational frequencies were employed to decide the types of molecular motions related with each of the experimental bands observed. The nonlinear optical properties of the complex reveal that changes induced in the solvents have a small effect on the hyperpolarizability.

Journal of Structural Chemistry. 2018;59(1):245-251
pages 245-251 views

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