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Vol 64, No 6 (2019)

Molecular Biophysics

The Singlet–Triplet Fission of Carotenoid Excitation in Light-Harvesting Complexes from Thermochromatium tepidum

Gryaznov A.A., Klenina I.B., Makhneva Z.K., Moskalenko A.A., Proskuryakov I.I.

Abstract

Abstract—Illumination of purple phototrophic bacteria in the carotenoid absorption band of light harvesting complexes often leads to low energy efficiency of absorbed light. This is due to singlet–triplet fission of carotenoid excitation. In the present study, the nature of this process was explored with a phototrophic bacterium Thermochromatium tepidum as an example. It was demonstrated by time-resolved EPR spectroscopy and magnetic field modulation of the fluorescence yield that the concept of intramolecular excitation fission that was developed in several publications was not confirmed experimentally. Evidence of the intermolecular character of excitation fission that involves two carotenoid molecules of the light-harvesting pigment–protein complexes, LH1-RC and LH2, has been obtained. The advantages of intermolecular excitation fission for application in photovoltaic solar energy converters are discussed.

Biophysics. 2019;64(6):847-852
pages 847-852 views

The Effect of the Viscosity of a Trehalose Solution on ATP Hydrolysis by Chloroplast F1-ATPase

Novichkova N.S., Malyan A.N.

Abstract

The effect of trehalose solution viscosity on the kinetics of ATP hydrolysis by CF1-ATPase (pea chloroplast F1-ATPase) was studied. Trehalose added to the reaction mixture had a double effect: the Mg-dependent enzyme activity was stimulated at trehalose levels below 20 wt % and suppressed at higher trehalose levels. The Ca-dependent activity of CF1 decreases monotonically with the increasing trehalose level. It was shown that stimulation of the Mg-dependent enzyme activity was a result of diminished Mg-ADP-dependent enzyme inactivation. In the case of negligible inactivation, the elevated trehalose content caused a decrease in the maximum rate of ATP hydrolysis and the apparent Michaelis constant increased. The changes in the values of the Michaelis constant and enzyme activity indicate that the delivery of reaction substrates and the conformational changes in CF1-ATPase accompanying the hydrolysis are impeded by the viscosity of the medium. In accordance with Cramer’s rule, the energy loss due to interaction with the medium leads to the conclusion that the efficiency of energy conversion by CF1-ATPase never reaches 100%.

Biophysics. 2019;64(6):853-857
pages 853-857 views

Chlorophyll Fluorescence of Summer Phytoplankton in Reservoirs of the Zvenigorod Biological Station of Moscow State University

Matorin D.N., Timofeev N.P., Sindalovskaya M.L., Shidlovskaya N.A., Todorenko D.A., Alekseev A.A.

Abstract

The results of long-term observations and monitoring of three reservoirs of Zvenigorod Biological Station of Moscow State University using modern chlorophyll fluorescence methods are presented. A sharp increase in chlorophyll content (up to 431 μg/L) and photosynthesis activity (FV/FM up to 0.7) associated with the growth of a monoculture, Chlorella vulgaris, was found in 2017 Pozharnyi Pond pond constructed near University dormitory facilities. The high activity of light reactions of this phytoplankton was evident as changes in the following parameters: the maximum quantum yield of primary photochemistry in photosystem II (FV/FM), the maximum relative electron transport rate (ETRmax), maximal light utilization coefficient (α), the efficiency of electron transport (φEo) and the performance index of photosystem II (PIABS) increased. This was accompanied by a decrease in the density of QB-non-reducing centers (VJ) and dissipated energy flux per reaction center (DI0/RC). The most sensitive parameters of fluorescence induction curve (PIABS and φEo) and the coefficient of maximal light utilization coefficient (α) are proposed to monitor the state of phytoplankton in reservoirs.

Biophysics. 2019;64(6):858-865
pages 858-865 views

The Nature of the Supramolecular Structural Variation and Hydrophilic Properties of Cellulose during Water Sorption

Grunin Y.B., Ivanova M.S., Masas D.S., Grunin L.Y.

Abstract

Water sorption on cellulose was studied in detail. The mechanism of the adsorption–desoprtion hysteresis loop was considered using NMR relaxation methods and sorption phenomena. The degree of crystallinity was found to decrease in cellulose during water sorption, while the specific surface area of cellulose increased because a wedging pressure arose as a new adsorbent–adsorbate interface formed. The most significant changes in these parameters were observed during desorption and were accompanied by the formation of an additional capillary-porous system in cellulose. Correlations were observed between the surface tension coefficient at the solid–liquid interface, the adsorption equilibrium constant, and the net heat of adsorption.

Biophysics. 2019;64(6):866-869
pages 866-869 views

Diode Laser Spectroscopy for Creating Effective Measuring Systems and Their Use in Biological and Medical Research

Ponurovskii Y.Y., Zaslavskii V.Y., Nadezhdinskii A.I., Spiridonov M.V., Stavrovskii D.B., Shapovalov Y.P., Karabinenko A.A., Petrenko Y.M.

Abstract

In this paper, we present the most important principles of diode laser spectroscopy, which allow one to create fundamentally new measuring systems for diverse applications in biology and medicine. Using the diode laser spectroscopy method and its primary hardware implementation the emission of gas molecules from skin of the hand was registered and ammonia skin emission was found to be dominant. The properties of exhaled air from patients in different states were determined with another special measuring complex of diode laser spectroscopy. It was shown that when the functional state of the body changes, the gas composition of molecular substances that are present in the exhaled air is altered indirectly and their levels vary significantly depending on the health of the individual. Our findings suggest that it is possible to study the specific functional properties of the human body to facilitate assessment of the health of an individual to determine whether pathological processes occur in the body at various stages of their severity using diode laser spectroscopy. This paper presents clinical and experimental data on this issue.

Biophysics. 2019;64(6):870-884
pages 870-884 views

A Multisensory Stripping Voltammetry Method for Analysis of the Generic Anti-Glaucoma Drug Betoptic

Balashova L.M., Kolesnichenko I.I., Namiot V.A., Doronin A.N., Bakunina N.A., Kuznetsova Y.D., Udaltsov S.N.

Abstract

A new electrochemical method for multisensory stripping voltammetry has been used to determine whether it is appropriate for determination of generic forms of the drug Betoptic, that is, Xonef, Betoftan, and Betalink EU in tear fluid. Measurements were carried out on a planar three-electrode interdigitated electrode. It has been shown that this method is effective for determination of the generics. The dynamics of changes in their concentrations over time were examined. After instillation of the generics in glaucoma patients, their concentrations in the lacrimal fluid remained unchanged within 12 h. The list of organic substances that can be determined by the method of multisensory stripping voltammetry has been extended.

Biophysics. 2019;64(6):885-889
pages 885-889 views

Cell Biophysics

Virus Detection Methods and Biosensor Technologies

Guliy O.I., Zaitsev B.D., Larionova O.S., Borodina I.A.

Abstract

This paper provides a brief overview of the modern and classical virus detection methods, including virus detection with bacteriophages as an example. Attention is given to the use of screening methods for virus detection in the analysis of large numbers of samples, which can help avoid serious costs in the detection of viruses. One of the fastest growing directions in microbiology is the development of biosensor methods for virus detection, including those based on electrophysical analysis methods. The interest in biosensor systems for virus detection in aqueous solutions is due to their simplicity, rapidity, cost-effectiveness, and relatively high sensitivity. The promise is shown of the use of electro-acoustic sensors in the development of biosensor methods for virus detection.

Biophysics. 2019;64(6):890-897
pages 890-897 views

On the Relationship between the Z-Component of the Geomagnetic Field and the Biological Activity of an Aqueous Bacterial Suspension

Gall L.N., Lekhtlaan N.P., Tsygankov A.I.

Abstract

Changes in Escherichia coli and Staphylococcus aureus reproduction were experimentally studied upon exposure of bacterial suspensions or the solvent (water) to a rectified electromagnetic field of a low frequency (4 Hz) and low intensity (~5.1–6 T) with various orientations of its vector with respect to the Z axis of the geomagnetic field. An increase in the total Z component of the field that influenced bacteria was associated with an accelerated formation of bacterial colonies, while a decrease in the component inhibited bacterial colony formation.

Biophysics. 2019;64(6):898-900
pages 898-900 views

The Formation of Ordered structures of Bacterial Porins in a Lipid Bilayer and the Analysis of their Morphology by Atomic Force Microscopy

Naberezhnykh G.A., Karpenko A.A., Khomenko V.A., Solov’eva T.F., Novikova O.D.

Abstract

Ordered nanostructures of porin from the outer membrane of Yersinia pseudotuberculosis (YpOmpF) were formed in two ways: from proteoliposomes and by direct protein reconstitution in the pre-deposited phospholipid bilayer on mica surface. The morphological analysis of the structures was performed by atomic force microscopy. It was shown that the efficiency of formation, the degree of homogeneity, and the size of porin domains substantially depend on the experimental conditions and the presence of lipopolysaccharide in a porin sample or in the bilayer. It was found that using proteoliposomes resulted in formation of the aggregates of porin nanodomains on the mica surface, with uneven distribution in the bilayer and quite different size ranges (50–250 nm). In the case of direct reconstruction of porin, it was shown that a decrease in pH of the solubilizing buffer promotes the inclusion of a sufficiently large amount of protein as homogeneous domains with an average size of 35–40 nm but does not lead to the formation of extended nanostructured regions in the bilayer. The most efficient incorporation of porin into the lipid bilayer with the formation of clusters of tightly packed protein domains was achieved using a porin sample in combination with peptidoglycan and lipopolysaccharide, which this protein is tightly bound to in the native bacterial membrane.

Biophysics. 2019;64(6):901-907
pages 901-907 views

A Comparative Study of the Effects of Palmitic Acid and ω-Hydroxypalmitic Acid as Inducers of Ca2+-Dependent Permeabilization of Liver Mitochondria and Lecithin Liposomes

Dubinin M.V., Samartsev V.N., Stepanova A.E., Semenova A.A., Khoroshavina E.I., Belosludtsev K.N.

Abstract

The effects of ω-hydroxypalmitic acid as an inducer of Ca2+-dependent membrane permeabilization were studied on isolated rat liver mitochondria energized by succinate oxidation and lecithin liposomes. These Ca2+-dependent effects of ω-hydroxypalmitic acid on mitochondria and liposomes were compared with similar well-studied effects of palmitic acid. It was found that ω-hydroxypalmitic acid induced significantly more intensive mitochondrial swelling than palmitic acid in the presence of cyclosporin A and, therefore, was a more effective inducer of Ca2+-dependent cyclosporin A-insensitive permeabilization of the inner membrane of the organelles. At the same time, ω-hydroxypalmitic acid was a much less effective inducer of Ca2+-dependent release of sulforhodamine B from liposomes compared to palmitic acid. It has been shown that, in contrast to palmitic acid, the action of ω-hydroxypalmitic acid as an inducer of Ca2+-dependent pore in the liver mitochondria was completely blocked by inorganic phosphate in the presence of cyclosporin A. It was found that in this case inorganic phosphate cannot be replaced by vanadate, a permeable anion with similar properties. These results are considered as evidence of significant difference in the mechanisms of action of ω-hydroxypalmitic acid and palmitic acid as inducers of the Ca2+-dependent permeabilization of liver mitochondria. While the Ca2+-dependent effect of palmitic acid can be considered to be due the formation of a lipid pore, the Ca2+-dependent effect of ω-hydroxypalmitic acid in the presence of inorganic phosphate can be due to the formation of a cyclosporin A-sensitive mitochondrial permeability transition pore. The effect of inorganic phosphate as an inhibitor of ω-hydroxypalmitic acid-induced Ca2+-dependent cyclosporin A-sensitive pore in liver mitochondria is discussed.

Biophysics. 2019;64(6):908-916
pages 908-916 views

Late Biochemical and Cytogenetic Changes in Plasma and Peripheral Blood Lymphocytes in People Exposed to Low-dose Radiation as a Result of the Accident at the Chernobyl Nuclear Power Plant

Ivanenko G.F.

Abstract

A study was conducted to evaluate the biochemical and cytogenetic parameters in peripheral blood lymphocytes in participants in the Chernobyl accident liquidation who were exposed to external and internal radiation in the dose range (0.1–70 cSv) and children living in territories with different levels of radionuclide contamination (1–20 Ci/km2) as a result of the Chernobyl accident. The effects of low-intensity radiation were studied in a comparative analysis of the relationship between the chromatid break index, the rate of mutagenesis in somatic cells (lymphocytes), and the level of reduced glutathione in blood plasma. The increased frequency of chromatid breaks in lymphocytes and an increased level of reduced glutathione in the blood plasma in children and liquidators exposed to low doses of radiation (0.1–20 cSv) were found to be statistically significant compared to the control. As the radiation dose increased (20–70 cSv), the increase in cytogenetic abnormalities in the peripheral blood lymphocytes of liquidators and children from Chechersk (Gomelsk oblast, Belarus) was accompanied by a decrease in the water-soluble antioxidant level in the plasma. The data on the relationship of the reduced glutathione level with the major indices of the cytogenetic status are important for identification of later pathological health-related conditions in people exposed to chronic ionizing radiation.

Biophysics. 2019;64(6):917-925
pages 917-925 views

The Cytotoxicity of Cold Atmospheric Plasma against HeLa Cancer Cells and its Modification with Pharmaceutical Substances

Akopdzhanov A.G., Shimanovskii N.L., Stepanova D.S., Fedotcheva T.A., Pulish A.V., Gusein-zade N.G., Kolik L.V., Konchekov E.M.

Abstract

It has been shown that low-temperature non-equilibrium piezoelectric direct discharge plasma exerts a dose-dependent cytotoxic effect on a HeLa cell culture. Doxorubicin, an antitumor antibiotic, potentiates this effect of cold plasma, while dihydroquercetin, as an antioxidant, attenuates it.

Biophysics. 2019;64(6):926-929
pages 926-929 views

The Sensitivity of Human Tumor Cells to the Cytotoxicity of Gold Polyacrylate (Aurumacryl)

Korman D.B., Nekrasova E.I., Ostrovskaya L.A., Ryabaya O.O., Bluhterova N.V., Abzaeva K.A.

Abstract

The cytotoxic effect of the antitumor drug aurumacryl (gold polyacrylate) against human tumor cells of various origins has been studied. It has been shown that aurumacryl exhibits significant cytotoxic activity against cells of lung carcinoma А549 (IC50 = 60 μg/mL), melanoma Mel-mо (IC50 = 80 μg/mL), and breast carcinoma MCF-7 (IC50 = 90 μg/mL), while being substantially less efficient against colon carcinoma НСТ116 cells (IC50 = 180 μg/mL).

Biophysics. 2019;64(6):930-935
pages 930-935 views

The NADH-Oxidase Activity of Mitochondria under Hypotony with Respiratory Chain Inhibitors

Lvov A.M., Vekshin N.L.

Abstract

We studied the contribution of NADH oxidase to mitochondrial respiration in a suspension under extreme conditions: in a hypotonic medium and with respiratory poisons rotenone, antimycin, and sodium azide. The experiment was carried out with rat liver mitochondria. It was shown that not only cytochrome oxidase but also NADH dehydrogenase of the respiratory chain notably consume oxygen to oxidize exogenous NADH. For this reason NADH-associated mitochondrial respiration is not completely inhibited by respiratory poisons. The insensitivity of respiration to poisoning is a result of a shunt of electron transfer from NADH to oxygen directly via NADH dehydrogenase. This residual respiration via NADH oxidase, which is insensitive to respiratory chain inhibitors, may account for one-half of the total oxygen consumption under extreme conditions.

Biophysics. 2019;64(6):936-939
pages 936-939 views

Thermodynamic and Electrochemical Mitochondrial Cycles (in the Direct and Reverse Directions)

Tatevosyan A.S., Bunyakin A.V.

Abstract

A meta-analysis of the functional states of mitochondria was carried out using a mathematical model based on changes in the direction and speed of thermodynamic (TD) and electrochemical (EC) parameters (pressure, volume, temperature, entropy, Gibbs potential, exergy, etc.), which are interrelated. A mathematical model of the TC and EC cycle of mitochondria was constructed using the basic principle of supramolecular functional interactions. The model describes the TD and EC reactions that occur in the mitochondrial matrix–inner membrane–intermembrane space system and are accompanied by an accumulation of electrochemical potential and charge separation (ionization). Four functional states of mitochondria were studied in the situation where the speed and direction of electron movement along the respiratory chain changed in the thickness of the inner membrane in association with fluctuations in heat flow. The TD and EC cycle of mitochondria is a continuous succession of transitions between quasi-static states, in which quasi-equilibrium states change recurrently, displaying typical coherent stability of non-equilibrium processes according to I. Prigogine. The mathematical model of the TD behavior of mitochondria and the limitations imposed by laws of physical and chemical thermodynamics indicate that the highest degree of TD efficiency in the process of mitochondrial respiration corresponds to the state where Gibbs energy and exergy are at a minimum and entropy is at a maximum; the functional state was consequently identified as a basic one.

Biophysics. 2019;64(6):940-949
pages 940-949 views

Complex Systems Biophysics

Identification of Discrete States of the Universal Period-Tripling System by Varying the Frequency of the Generator of Periodic Oscillations

Kolombet V.A., Lesnykh V.N., Shnoll S.E.

Abstract

A conventional generator of periodic oscillations can be used as an amplifier of periodic noise. Sudden changes in generator frequency were observed during experiments and corresponded to so-called Arnold tongues. Arnold tongues are known to arise in a region where a periodic process is synchronized by a periodic external forcing. The experimental findings were assumed to demonstrate that the forcing actually exists; i.e., there was a periodic process that affected the generator frequency. This hidden periodic process belongs to the so-called universal period-tripling system (UPTS). The UPTS has repeatedly manifested itself on an indirect basis, by adjusting a variety of technical, astronomical, physical, geophysical, biological, etc., periodic events to forcing. The existence of the UPTS should be taken into account, in particular, when designing and debugging technical devices, including those for medical purposes.

Biophysics. 2019;64(6):950-955
pages 950-955 views

Population Dynamics: Mathematical Modeling and Reality

Medvinsky A.B., Adamovich B.V., Rusakov A.V., Tikhonov D.A., Nurieva N.I., Tereshko V.M.

Abstract

Application of mathematical modeling for analysis of natural phenomena relies on model reduction techniques, which inevitably raises the question of whether the results of simulation reflect real processes. This work analyzes problems that arise when the results obtained by mathematical modeling of population processes are compared to data collected by monitoring of natural ecosystems. The source of these problems is that the type of dependencies between variables that describe the population dynamics, as well as the choice of numerical values assigned to the parameters of the mathematical model, are often impossible to justify, even based on the monitoring data from a particular ecosystem. This paper proposes an approach to mathematical modeling that would take the impact of the entire complex of biotic and abiotic factors on the population dynamics into account. Its central feature is consideration of ecosystem monitoring data and incorporating them directly into mathematical models of population dynamics. This approach would make it possible, in particular, to evaluate the extent to which individual environmental factors influence both the variations in population abundance recorded during monitoring and those characteristics of population processes that are not directly measured during monitoring, but are obtained by mathematical modeling.

Biophysics. 2019;64(6):956-977
pages 956-977 views

The Effect of Short-Term Breath Holding on Pulse Wave Velocity and Vascular Stiffness

Sobol K.V., Burdygin A.I., Nesterov V.P.

Abstract

Using noninvasive piezopulsometry, the dynamic structure of the arterial pressure waveform was studied upon exposure of the human cardiovascular system to short-term hypoxia. A strained breath-hold (SBH) after deep inspiration was used to induce short-term hypoxia. The pulse wave velocity (PWV) was reduced by 8% during a SBH. The arterial stiffness was observed to significantly decrease during a SBH.

Biophysics. 2019;64(6):978-983
pages 978-983 views

A Study of the Antioxidative and Radioprotective Properties of Isobornylphenols during X-Ray Irradiation at a Low Dose

Shishkina L.N., Babkin A.Y., Klimovich M.A., Kozlov M.V., Mazaletskaya L.I., Sheludchenko N.I., Chukicheva I.Y., Fedorova I.V., Kutchin A.V.

Abstract

The inhibitory efficiency and radioprotective properties of two isobornylphenols were studied during their administration 30 minutes before X-ray irradiation of outbreed mice (females) at a dose of 50 sGy. It was found that 1,3-dihydroxy-4,6-diisopropylbenzene exhibited high efficiency due to its interaction with peroxy radicals. The spleen index and the content of the lipid peroxidation products in blood plasma, which were previously suggested as tests for the assessment of the radioprotective properties of substances during the irradiation of animals at low doses, returned to the norm with the prophylactic administration of 2-isobornyloxyphenols. An aqueous solution of ethanol was found to be unfavorable as a solvent for the administration of hydrophobic substances under the effects of weak radiation. The data we obtained and the literature analysis allow us to propose isobornylphenols as radioprotective agents during radiation at different doses.

Biophysics. 2019;64(6):984-990
pages 984-990 views

Assessment of the Biological Efficiency of 450 MeV/Nucleon Accelerated Carbon Ions in the U-70 Accelerator According to the Criterion of Mouse Survival

Rozanova O.M., Smirnova E.N., Dyukina A.R., Belyakova T.A., Strelnikova N.S., Sorokina S.S., Pikalov V.A., Zaichkina S.I.

Abstract

Abstract—The coefficients of the relative biological efficiency of a carbon ion beam with an energy of 450 MeV/nucleon upon the irradiation of mice at a dose of 6.5 Gy in different parts of the Bragg curve have been determined by the 30-day survival test, the dynamics of death, and the average life expectancy of mice in comparison with exposure to X-ray radiation. The integral value ​​of the coefficients of the relative biological efficiency of carbon ions upon irradiation before the Bragg peak is 0.8, in the spread-out Bragg peak it is 1.5, and after the Bragg peak, it is 0.7. The value of the relative biological efficiency in the modified Bragg peak, as calculated by the ratio of doses that lead to the death of 50% of the animals, was 2.9. Changes of the width of the modified Bragg peak did not affect the death rate of the animals.

Biophysics. 2019;64(6):991-998
pages 991-998 views

The Antitumor Activity of Dinitrosyl Iron Complexes with Mercaptosuccinate in Murine Solid Tumor Models

Vanin A.F., Ostrovskaya L.A., Korman D.B., Bluchterova N.V., Rykova V.A., Fomina M.M.

Abstract

The antitumor activity of the binuclear form of dinitrosyl iron complexes with mercaptosuccinate administered intravenously was studied in murine models of solid tumors: Lewis lung carcinoma and Acatol adenocarcinoma. The maximum effect, suppression of tumor growth by 65% in comparison to the control for Lewis carcinoma, was observed for a course of six intravenous injections in a daily dose of 2.5 μM/kg administered every 2 or 3 days over the period of days 1–17 after tumor transplantation.

Biophysics. 2019;64(6):999-1002
pages 999-1002 views

The Antioxidant Activity of Ceruloplasmin in Rhabdomyolysis-Induced Acute Kidney Injury

Zamorskii I.I., Unguryan T.M., Melnichuk S.P.

Abstract

Abstract—Rhabdomyolysis is a life-threatening syndrome that may occur after skeletal muscle injury; in 10 to 40% of cases, it leads to acute renal tubular necrosis and acute kidney injury induced by myoglobin release from damaged myocytes. Reactive oxygen species and oxidative stress are major determinants of acute kidney injury. One of the principal antioxidants in the blood plasma is ceruloplasmin, which performs many physiological functions. The effects of ceruloplasmin on renal function and the prooxidant–antioxidant balance in the kidneys and blood were studied in adult non-linear white rats with experimental rhabdomyolysis. It was found that prophylactic administration of ceruloplasmin had a renoprotective effect; it improved renal function, reduced the intensity of lipid and protein peroxidation, and increased the activity of glutathione peroxidase in kidney tissue and blood, as well as the levels of ceruloplasmin and molecules with SH-groups in the blood plasma.

Biophysics. 2019;64(6):1003-1006
pages 1003-1006 views

Discussions

Variations of Proton Mobility in Distilled Water

Ageev I.M., Rybin Y.M.

Abstract

Variations in the electrical conductivity of distilled water were studied experimentally at constant water temperatures. When the concentrations of major ions in water remained constant, proton mobility was found to display daily variations with a coefficient of variation reaching 15% of the initial value. The amplitude of the variation was observed to depend on the water temperature. Possible mechanisms of the observed effects are discussed.

Biophysics. 2019;64(6):1007-1011
pages 1007-1011 views

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