


Vol 55, No 3 (2019)
- Year: 2019
- Articles: 17
- URL: https://journals.rcsi.science/0003-6838/issue/view/9141
Article
Composition of a Microbial Community at Different Stages of Composting and the Prospects for Compost Production from Municipal Organic Waste (Review)
Abstract
This paper summarizes the current understanding of changes in the composition of the microbial community within compost in relation to the temperature at each stage of the process and explores the role of microbial associations in the biodegradation and detoxification of organic waste components. Attention is paid to the process of creating a balance between the active aerobic and anaerobic microorganisms in the compost mass, which allows nitrogen to be preserved in the finished compost and the cost of aeration to be reduced. It has been shown that the addition of natural minerals, in particular, zeolite, has a positive effect on the composting process and improves the quality of the compost, ensures the content of silicon in a bioavailable form in the compost, prevents ammonia emissions, and reduces the concentration of heavy metals. Particular attention is paid to the prospect of composting compacted anaerobically treated sewage sludge with the addition of an organic fraction of municipal solid waste (MSW) and lignocellulosic waste.



The Interaction of Lysozyme with Carrageenans
Abstract
The interaction of lysozyme with kappa and lambda carrageenans and the thermal stability of the enzyme within a complex are studied via turbidimetry, dynamic light scattering, and differential scanning calorimetry. It is shown that complexes of lysozyme with kappa carrageenan are stabilized by Coulomb and secondary forces, while the complex formation of lysozyme with lambda carrageenan is governed by electrostatic interactions only. The stoichiometric composition of the complexes at a pH of 7.0 and an ionic strength of I = 0.01 is 0.3 : 1.0 (weight of carrageenan/weight of lysozyme) or 1 : 120 (mole of carrageenan/mole of lysozyme) and changes monotonically with an increase in I up to a higher carrageenan content in the mixture. The effect of I on the complex formation has a nonmonotonic character at q = 0.1 and q = 0.3. The complex formation is accompanied by the loss of thermal stability of the enzyme (which is more significant in the case of lambda carrageenan), suggesting that carrageenans have a higher affinity for the unfolded form of lysozyme than for its native form.



Preparation and Purification of Recombinant Dipeptidyl Peptidase 4 from Tenebrio molitor
Abstract
Dipeptidyl peptidase 4—is a unique proline-specific peptidase, capable to hydrolyze the bonds, formed by proline amino acid residue, cleaving dipeptides from N-terminus of peptides and proteins, containing this imino acid in P1 position. Recombinant dipeptidyl peptidase 4 from the insect Tenebrio molitor was prepared for the first time in the Pichia pastoris protein expression system; a method for its purification was proposed. The authenticity of the obtained recombinant enzyme was confirmed by mass spectrometry. The use of the obtained preparation of the T. molitor enzyme is promising for the hydrolysis of resistant to proteolysis proline-rich peptides and proteins, particularly for prolamins – the main storage proteins of cereal seeds, since they are not fully hydrolyzed by human digestive enzymes and cause autoimmune gastrointestinal celiac disease in the susceptible group of people.



Expression, Purification and Functional Characterization of Two Recombinant Malate Dehydrogenases from Mortierella isabellina
Abstract
To study the characteristics of two malate dehydrogenases (MDHs), their coding genes MIMDH1 and MIMDH2 were cloned and expressed in Escherichiacoli BL21 cells. The molecular weights of both recombinant enzymes partially purified using Ni-NTA affinity chromatography were 32 kDa, and the specific activities of purified MIMDH1 and MIMDH2 were 329.3 and 241.3 U/mg protein, respectively. The optimal temperatures for MIMDH1 and MIMDH2 activities were 55 and 30oC, respectively, with 70% MIMDH1 activity and ≥70% MIMDH2 activity remaining after 30 min incubation at 45oC. Addition of 2 mM Zn2+ enhanced MIMDH1 activity, whereas the addition of other metal ions resulted in different degrees of inhibition. The inhibitory effect of Co2+ was most pronounced on MIMDH1, reaching 82.8% inhibition. Addition of 2 mM Ba2+ or Mn2+ increased MIMDH2 activity, the addition of other metal ions resulted in different degrees of inhibition. Furthermore, MIMDH1 was stable at pH range of 7.5–8.5, with optimal activity observed at pH of 8.0. MIMDH2 showed similar stability at the same pH range, but was optimal at pH of 7.5. The Vmax and KM values for recombinant MIMDH1 and MIMDH2 catalyzing the reduction of oxaloacetate to malate were 17.66 µmol mg–1min–1 and 0.541 mM, 15.59 µmol mg–1min–1 and 0.683 mM, respectively.



Expression and Purificaton of Multi-toxin Fusion Protein of Clostridium perfringens and the Preparation of Genetically Engineered Multivalent Subunit Vaccine
Abstract
Currently, there is an urgent need to develop genetically engineered multivalent subunit vaccines or DNA vaccines to provide protection against infection of multiple types of Clostridium perfringens. In this study, we expressed the fusion protein of α-β2-ε-toxin derived from C. perfringens in Escherichia coli. For the first time, an efficient expression of a soluble α-β2-ε-toxin in E. coli was obtained after codon optimization, removal of the signal peptide and optimization of the expression conditions. Increased level of antibodies was detected in the serum of mice after immunization with the expressed protein. The immunized mice were protected from C. perfringens type A, B, C and D infections with the survival rate of 100, 100, 90and 100%, respectively.



Effects of Antioxidant Molecules on Sensor and Reporter Luminescent Strains
Abstract
The paper reports on a study of the effects of different type antioxidant molecules on recombinant, luminescent, bacterial biosensensors. It has been demonstrated that thiamine can activate oxidative stress promoters, mainly in biosensors based on the parental cells of Salmonella typhimurium LT2. We have detected the induction of soxS and katG promoters and activation of the SOS-response system in the analyzed biosensors in the presence of pyridoxine. It has been shown that ascorbic acid has pronounced prooxidant and toxic properties. Other analyzed compounds proved to be less active and did not induce antioxidant and reparatory systems in luminescent biosensors based on the parental cells of Salmonella typhimurium LT2 and Escherichia coli MG1655.



1,3-Diaminopropane and Spermidine Upregulate Lovastatin Production and Expression of Lovastatin Biosynthetic Genes in Aspergillus terreus via LaeA Regulation
Abstract
The filamentous fungus Aspergillus terreus is the main industrial producer of lovastatin, a cholesterol-lowering drug that is also used as a semiproduct for simvastatin production. The exogenous addition of such polyamines as 1,3-diaminopropane or spermidine during the fermentation of wild-type A. terreus ATCC 20542 and overproducing A. terreus 43-16 strains results in a 20−45% increase in lovastatin production. In the case of strain 43-16, the maximum production level (10 g/L) was observed three days earlier than in the control variant. During this fermentation period, the expression level of genes belonging to the lovastatin biosynthetic cluster and the laeA gene (a global regulator of a fungal secondary metabolism) are increased, but the expression patterns for genes of the polyamine metabolic pathway were similar for both strains.



Isolation of a Stable Astaxanthin-Hyperproducing Mutant of Xanthophyllomyces dendrorhous Through Random Mutagenesis
Abstract
Astaxanthin is a red xanthophyll pigment which is widely commercially used due to its strong antioxidant properties. The heterobasidiomycetous yeast, Xanthophyllomyces dendrorhous, is one of the main microorganisms for industrial production of astaxanthin. However, astaxanthin content is low in wild type yeast strain. In our study, we had successfully isolated X. dendrorhous mutant with higher astaxanthin production capacity using chemical mutagen, N-methyl-N'-nitro-N-nitrosoguanidine (MNNG), through β-ionone screening. The astaxanthin-hyperproducing mutant X. dendrorhous M34 had total carotenoid yield of 602.4 µg/g DW and a 110.8% increment of total carotenoid content compared to wild type. Survival studies indicated that MNNG treatment of yeast led to higher lethality in recipient cells compared to ethyl methanesulfonate (EMS) one. EMS-mutated strains did not show promising carotenoid yield during the screening process by β-ionone and the rate of reverse mutation was very high. In the stability test, no reversion was observed in X. dendrorhous M34 mutant after 10 successive transfers in culture broth. Reversed-phase HPLC showed that the elution profiles of carotenoid extracts of M34 and wild type X. dendrorhous were in agreement with the authentic standard and the major peak in M34 extract was identified as astaxanthin. The stable mutant with high yield of astaxanthin obtained in this work could be a suitable candidate for the industrial-scale production of astaxanthin.



Antioxidant Effect of Caffeic Acid Derivatives on Sod and Glutathione Defective Yeasts
Abstract
Hydroxycinnamic acids have received particular attention because they are the most abundant phenolic class in our diet and because of the increasing interest in reducing oxidative damages. These damages are related to diseases such as cancer and atherosclerosis, as well as neurodegenerative disorders. The objective of this study was to evaluate the antioxidant protection of chlorogenic and caffeic acids and caffeic acid phenethyl ester (CAPE) against oxidative stress in vivo. Antioxidant activity was evaluated using BY4741 strain and superoxide dismutase- and glutathione-deficient (Δsod1 and Δgsh1) mutants of Saccharomyces cerevisiae through cell viability assays, lipid peroxidation levels and glutathione quantification. In the cell viability tests, caffeic acid promoted higher stress tolerance, with a 106% increase in S. cerevisiae BY4741. However, in the Δsod1 mutant, the effect of chlorogenic acid was more prominent, showing a 3.3-fold increase and in the Δgsh1 mutant all treatments provided a similar level of protection. The phenolic acids protected cell membranes in control and mutant cells at the same level. CAPE maintained the GSH concentration at levels similar to the non-stressed control (48.6 ± 10.9 nmol/mg of cells). The maintenance of cytoplasmic levels of GSH that was promoted by CAPE, despite the induction of stress, indicates its superior antioxidant protection to its precursor, caffeic acid.



Soybean Trypsin Inhibitors: Selective Inactivation at Hydrolysis of Soybean Proteins by Some Enzymatic Complexes
Abstract
Inactivation of the Kunitz and Bowman-Birk soybean trypsin inhibitors at hydrolysis of soybean proteins by enzymatic complexes was studied. These complexes are derived from king crab hepatopancreas, cod fish pyloric caeca, and a commercial enzymatic complex of protosubtilin. Analysis of the soybean protein hydrolysates showed that these enzymatic complexes completely digested the Kunitz trypsin inhibitor (60–70% of the total trypsin inhibitors) and had almost no effect on the Bowman-Birk trypsin and chymotrypsin inhibitor. All of the enzymatic complexes contain different sets of enzymes with different proteolytic specificity. This allow to make the conclusion that Bowman-Birk inhibitor is highly resistant to proteolysis and is not inactivated at enzymatic hydrolysis.



Biosynthesis of Protoilludene Sesquiterpene Aryl Esters by Siberian Strains of the Genus Armillaria Fungi
Abstract
Secondary metabolites of the basidiomycetes of Armillaria borealis Marxm. and Korhonen, A. cepistipes Velen., A. gallica Marxm., A. ostoyae (Romagn.) Herink, and A. sinapina Bérubé and Dessur isolated in Southern Siberia (Krasnoyarsk region and Tyva Republic) and in the Far East (Sikhote-Alin) were studied. Metabolites belonging to the class of protoilludene sesquiterpene aryl esters of the melleolides group have been identified in the species A. borealis, A. cepistipes, and A. sinapina. The strains differ in the spectrum of synthesized melleolides. A. borealis strain 74g synthesized a wider range of melleolides than other strains of the species: melleolides B, C, D and H, melledonals B and C, 5'-O-methylmelledonal, 13-hydroxy-5'-O-methylmelledonal, and armillarinin. It was shown that the composition of the medium influenced the amount of synthesized metabolites. All of the studied strains synthesizing melleolides exhibited a toxicogenic and phytopathogenic effect on seeds and seedlings of Picea abies (L.) H. Karst. and Abies sibirica Ledeb. A significant decrease in seed germination energy, laboratory and ground seed germination, the development of the root system of conifer seedlings was revealed. The maximum inhibitory effect was shown by the culture fluid of A. borealis 74g with the greatest amounts and variety of melleolides in the metabolome profile.



Metabolite Profiles and Biological Activity of Extracts from Alternaria sonchi S-102 Culture Grown by Different Fermentation Methods
Abstract
Five compounds, 4-chloropinselin, chloromonilinic acids B and C, alternariol, and emodin, are the first to be identified in the metabolite composition of Alternaria sonchi, a pathogen of field sowthistle (Sonchus arvensis L.). The metabolite profiles of extracts have been significantly influenced by fermentation and extraction techniques. Solid-state fermentation of A. sonchi S-102 on millet was preferable for the production of alternethanoxin A, chloromonilicin, and 4-chloropinselin with a yield of about 460, 70, and 2760 mg/kg respectively, while the use of pearl barley was optimal for the production of alternethanoxin B (215 mg/kg) and alternethanoxin D (29 mg/kg). Extracts from the culture broth and mycelium of A. sonchi obtained after surface cultivation of the fungus contained 4-chloropinselin, alternariol, emodin, and a number of unidentified biologically active compounds. The extracts display relatively low phytotoxic and antimicrobial activity and only trace levels of alternariol. Thus, there is low toxicological risk for the application of this fungus as a bioherbicide producer.



Biosynthesis of Ortho-Phtalic Acid Esters in Plant and Cell Cultures
Abstract
The biosynthesis of ortho-phtalic acid alkyl esters by intact plants, in vitro plants, and cell cultures was studies. It was established that all of the studied objects produce phtalic esters in considerable quantities. Thus, the biosynthesis of those compounds is a common feature of the plant world. These compounds are secreted in the environment and create a background of phthalate pollution independently of the possible technologic sources.



Thermostability of Photosystem I Trimers and Monomers from the Cyanobacterium Arthrospira platensis
Abstract
The correlation between changes in the circular dichroism (CD) spectra of antenna pigments and the photooxidation kinetics of the primary electron donor (P700) in trimeric and monomeric complexes of photosystem 1 (PS1) after incubation at elevated temperatures was studied to assess the thermostability of photosystem I (PSI) complexes from the cyanobacterium Arthrospira platensis. It was shown that heating of the monomers and trimers to 60 and to 70°C, respectively, caused a 10% decrease in the amplitude of the CD signals of antenna chlorophyll. Thermal disturbance of the spatial organization of the antenna chlorophyll correlated with a lower concentration of photoactive P700. A decrease in the initial rate of P700 photooxidation was observed already after 40°C for both monomers and trimers. This decrease occurred simultaneously with a decrease in the intensity of the carotenoid CD band of trimers but not monomers, which is probably due to the different carotenoid compositions of trimers and monomers. It is assumed that the slowdown of P700 photooxidation kinetics in PS1 complexes at temperatures up to 50–60°C is associated not with impairment of energy migration to the reaction center (P700) but rather with an initial delay of P700 photooxidation due to the changes in the state of the acceptor part of PS1, in particular, the secondary acceptor phylloquinone.



Development of Rapid Immunochromatographic Assay for D-dimer Detection
Abstract
An assay was developed for the rapid detection of a marker of coagulation and fibrinolysis, D‑dimer, based on the principle of immunochromatography in the “sandwich” format. The assay allows the quantification of D-dimer in blood plasma in concentrations ranging from 0.1 to 4.0 µg/mL, covering normal, borderline, and pathological levels of D-dimer. For plasma sample testing, the accuracy of detection was 2–8%. The diagnostic sensitivity and specificity of detection relative to the clinical threshold of the difference between the normal and pathological level of D-dimer (0.5 μg/mL) was 95 and 97%, respectively. The assay duration was 10 min. Testing of plasma samples did not require their dilution or other preliminary preparations. The developed immunochromatographic assay may represent a promising analytical tool for the rapid detection of D-dimer.



Monitoring of Biotechnological Processes by Enzyme Electrodes Modified with Carbon Nanotubes
Abstract
The characteristics of biosensors based on screen-printed electrodes containing glucose oxidase, alcohol oxidase, lactate oxidase, and a mixture of glucose oxidase and γ-amylase are studied. The enzymes have been immobilized in a conductive hydrogel of cross-linked bovine serum albumin modified with carbon nanotubes. The developed biosensors are applicable for the quantification of glucose, ethanol, lactic acid, and starch in fermentation media. The analytical and metrological characteristics of these biosensors are determined. The developed biosensor system allows for quantification of glucose, ethanol, lactate, and starch in the concentration range of 0.1–2.7, 1–27, 0.02–73 mM, and 0.6–21 g/L, respectively. Samples of alcoholic and fermented milk products, kvass, and fermentation mass have been analyzed. Statistical analysis of the assay results shows that glucose, ethanol, lactic acid, and starch concentrations determined by biosensors insignificantly differ from those determined by the reference methods. The developed set of biosensors based on specifically selected enzymes can be used for effective monitoring of biotechnological processes as an alternative to the conventional analytical methods.



Erratum


