Transgenesis in microalga Chlamydomonas reinhardtii: current approaches
- Authors: Virolainen P.A.1, Chekunova E.M.1
-
Affiliations:
- Saint Petersburg State University
- Issue: Vol 22, No 1 (2024)
- Pages: 47-62
- Section: Genetic basis of ecosystems evolution
- URL: https://journals.rcsi.science/ecolgenet/article/view/256750
- DOI: https://doi.org/10.17816/ecogen624418
- ID: 256750
Cite item
Abstract
Microalgae are a rich source of biologically active substances of natural origin, which have potential for use in pharmaceutical, agricultural, food and industrial production. Genetic engineering of microalgae opens up great prospects for creating improved strains that produce various food additives, commercial enzymes, as well as proteins for therapeutic purposes — antibodies, hormones and vaccines. Chlamydomonas reinhardtii P.A. Dang. is a unicellular green alga, a reference organism for studying the genetics of photosynthesis and developing new genetic engineering approaches in microalgae. The advantages of C. reinhardtii include the ability to transform all three of its genomes (nuclear, mitochondrial and chloroplast), low cost and ease of cultivation, safety for humans and the presence of a system for post-translational modification of proteins, which makes this organism a potential platform for use in biotechnology. Over the past few years, significant advances have been made in transgenesis of C. reinhardtii, including the use of new techniques based on the CRISPR/Cas9 genome editing technology. In this review, we summarize the available information on current approaches to transgenesis of the unicellular green alga C. reinhardtii: 1) general principles of transgenic constructs design for transformation of the nuclear and chloroplast genome, 2) popular selection markers used, 3) methods of cell transformation, 4) methods of genome editing using the CRISPR/Cas9 system.
Full Text
##article.viewOnOriginalSite##About the authors
Pavel A. Virolainen
Saint Petersburg State University
Email: st085618@student.spbu.ru
ORCID iD: 0000-0001-5918-9395
SPIN-code: 6564-9350
Scopus Author ID: 57883811500
PhD student
Russian Federation, 7/9 Universitetskaya emb., Saint Petersburg, 199034Elena M. Chekunova
Saint Petersburg State University
Author for correspondence.
Email: e.chekunova@spbu.ru
ORCID iD: 0000-0001-8942-4771
SPIN-code: 2788-6386
Scopus Author ID: 6701797455
Dr. Sci. (Biology), Senior Teacher
Russian Federation, 7/9 Universitetskaya emb., Saint Petersburg, 199034References
- Blaby-Haas CE, Merchant SS. Comparative and functional algal genomics. Annu Rev Plant Biol. 2019;70:605–638. doi: 10.1146/annurev-arplant-050718-095841
- Field CB, Behrenfeld MJ, Randerson JT, Falkowski P. Primary production of the biosphere: Integrating terrestrial and oceanic components. Science. 1998;281(5374):237–240. doi: 10.1126/science.281.5374.237
- Lu Y, Zhang X, Gu X, et al. Engineering microalgae: transition from empirical design to programmable cells. Crit Rev Biotechnol. 2021;41(8):1233–1256. doi: 10.1080/07388551.2021.1917507
- Siddiqui A, Wei Z, Boehm M, Ahmad N. Engineering microalgae through chloroplast transformation to produce high-value industrial products. Biotechnol Appl Biochem. 2019;67(1):30–40. doi: 10.1002/bab.1823
- www.fda.gov. [Internet]. US FDA [cited: 2023 Nov 1]. Available at: https://www.fda.gov/
- Jeon S, Lim J-M, Lee H-G, et al. Current status and perspectives of genome editing technology for microalgae. Biotechnol Biofuels. 2017;10:267. doi: 10.1186/s13068-017-0957-z
- Patel VK, Das A, Kumari R, Kajla S. Recent progress and challenges in CRISPR-Cas9 engineered algae and cyanobacteria. Algal Res. 2023;71:103068. doi: 10.1016/j.algal.2023.103068
- Merchant SS, Prochnik SE, Vallon O, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science. 2007;318(5848):245–250. doi: 10.1126/science.1143609
- Gallaher SD, Fitz-Gibbon ST, Strenkert D, et al. High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates. Plant J. 2018;93(3): 545–565. doi: 10.1111/tpj.13788
- Weeks DP. Genetic transformation of Chlamydomonas nuclear, chloroplast, and mitochondrial genomes. In: Goodenough U, editor. The Chlamydomonas sourcebook. Academic Press, 2023. P. 325–343. doi: 10.1016/B978-0-12-822457-1.00018-2
- Esland L, Larrea-Alvarez M, Purton S. Selectable markers and reporter genes for engineering the chloroplast of Chlamydomonas reinhardtii. Biology (Basel). 2018;7(4):46. doi: 10.3390/biology7040046
- Sun M, Qian K, Su N, et al. Foot-and-mouth disease virus VP1 protein fused with cholera toxin B subunit expressed in Chlamydomonas reinhardtii chloroplast. Biotechnol Lett. 2003; 25(13):1087–1092. doi: 10.1023/a:1024140114505
- He D-M, Qian K-X, Shen G-F, et al. Recombination and expression of classical swine fever virus (CSFV) structural protein E2 gene in Chlamydomonas reinhardtii chroloplasts. Colloids Surf B Biointerfaces. 2007;55(1):26–30. doi: 10.1016/j.colsurfb.2006.10.042
- Siripornadulsil S, Dabrowski K, Sayre R. Microalgal vaccines. In: León R, Galván A, Fernández E, editors. Transgenic microalgae as green cell factories. Advances in experimental medicine and biology. New York: Springer, 2007. Vol. 616. P. 122–128. doi: 10.1007/978-0-387-75532-8_11
- Surzycki R, Greenham K, Kitayama K, et al. Factors effecting expression of vaccines in microalgae. Biologicals. 2009;37(3):133–138. doi: 10.1016/j.biologicals.2009.02.005
- Dreesen IAJ, Charpin-El Hamri G, Fussenegger M. Heat-stable oral alga-based vaccine protects mice from Staphylococcus aureus infection. J Biotechnol. 2010;145(3):273–280. doi: 10.1016/j.jbiotec.2009.12.006
- Michelet L, Lefebvre-Legendre L, Burr SE, et al. Enhanced chloroplast transgene expression in a nuclear mutant of Chlamydomonas. Plant Biotechnol J. 2011;9(5):565–574. doi: 10.1111/j.1467-7652.2010.00564.x
- Gregory JA, Li F, Tomosada LM, et al. Algae-produced Pfs25 elicits antibodies that inhibit malaria transmission. PLoS One. 2012;7(5):37179. doi: 10.1371/journal.pone.0037179
- Gregory JA, Topol AB, Doerner DZ, Mayfield S. Alga-produced cholera toxin-Pfs25 fusion proteins as oral vaccines. Appl Environ Microbiol. 2013;79(13):3917–3925. doi: 10.1128/AEM.00714-13
- Jones CS, Luong T, Hannon M, et al. Heterologous expression of the C-terminal antigenic domain of the malaria vaccine candidate Pfs48/45 in the green algae Chlamydomonas reinhardtii. Appl Microbiol Biotechnol. 2013;97(5):1987–1995. doi: 10.1007/s00253-012-4071-7
- Shamriz S, Ofoghi H. Expression of recombinant PfCelTOS antigen in the chloroplast of Chlamydomonas reinhardtii and its potential use in detection of malaria. Mol Biotechnol. 2019;61(2):102–110. doi: 10.1007/s12033-018-0140-1
- Demurtas OC, Massa S, Ferrante P, et al. A Chlamydomonas-derived human papillomavirus 16 E7 vaccine induces specific tumor protection. PLoS One. 2013;8(4):61473. doi: 10.1371/journal.pone.0061473
- Vlasák J, Bøíza J, Ryba Š, Ludvíková V. Alga-based HPV16 E7 vaccine elicits specific immune response in mice. Asian J Plant Sci Res. 2013;3:141–148.
- Bertalan I, Munder MC, Weiß C, et al. A rapid, modular and marker-free chloroplast expression system for the green alga Chlamydomonas reinhardtii. J Biotechnol. 2015;195:60–66. doi: 10.1016/j.jbiotec.2014.12.017
- Castellanos-Huerta I, Bañuelos-Hernandez B, Tellez G, et al. Recombinant hemagglutinin of avian influenza virus H5 expressed in the chloroplast of Chlamydomonas reinhardtii and evaluation of its immunogenicity in chickens. Avian Dis. 2016;60(4):784–791. doi: 10.1637/11427-042816-Reg
- Beltran-López JI, Romero-Maldonado A, Monreal-Escalante E, et al. Chlamydomonas reinhardtii chloroplasts express an orally immunogenic protein targeting the p210 epitope implicated in atherosclerosis immunotherapies. Plant Cell Rep. 2016;35(5):1133–1141. doi: 10.1007/s00299-016-1946-6
- Berndt AJ, Smalley TN, Ren B, et al. Recombinant production of a functional SARS-CoV-2 spike receptor binding domain in the green algae Chlamydomonas reinhardtii. PLoS One. 2021;16(11):257089. doi: 10.1371/journal.pone.0257089
- Rasala BA, Muto M, Lee PA, et al. Production of therapeutic proteins in algae, analysis of expression of seven human proteins in the chloroplast of Chlamydomonas reinhardtii. Plant Biotechnol J. 2010;8(6):719–733. doi: 10.1111/j.1467-7652.2010.00503.x
- Zhao Y, Shi X, Zhang Z. High-frequency electroporation and expression of human interleukin 4 gene in Chlamydomonas reinhardtii chloroplast. Journal of Huazhong Agricultural University. 2006;25(2):110–116.
- Yang Z, Li Y, Chen F, et al. Expression of human soluble TRAIL in Chlamydomonas reinhardtii chloroplast. Chin Sci Bull. 2006; 51:1703–1709. doi: 10.1007/s11434-006-2041-0
- Mayfield SP, Franklin SE, Lerner RA. Expression and assembly of a fully active antibody in algae. PNAS USA. 2003;100(2):438–442. doi: 10.1073/pnas.0237108100
- Tran M, Zhou B, Pettersson PL, et al. Synthesis and assembly of a full-length human monoclonal antibody in algal chloroplasts. Biotechnol Bioeng. 2009;104(4):663–673. doi: 10.1002/bit.22446
- Barrera DJ, Rosenberg JN, Chiu JG, et al. Algal chloroplast produced camelid VH H antitoxins are capable of neutralizing botulinum neurotoxin. Plant Biotechnol J. 2015;13(1):117–124. doi: 10.1111/pbi.12244
- Wang X, Brandsma M, Tremblay R, et al. A novel expression platform for the production of diabetes-associated autoantigen human glutamic acid decarboxylase (hGAD65). BMC Biotechnol. 2008;8:87. doi: 10.1186/1472-6750-8-87
- Tran M, Van C, Barrera DJ, et al. Production of unique immunotoxin cancer therapeutics in algal chloroplasts. PNAS USA. 2013;110(1):15–22. doi: 10.1073/pnas.1214638110
- Wannathong T, Waterhouse JC, Young REB, et al. New tools for chloroplast genetic engineering allow the synthesis of human growth hormone in the green alga Chlamydomonas reinhardtii. Appl Microbiol Biotechnol. 2016;100(12):5467–5477. doi: 10.1007/s00253-016-7354-6
- Stoffels L, Taunt HN, Charalambous B, Purton S. Synthesis of bacteriophage lytic proteins against Streptococcus pneumoniae in the chloroplast of Chlamydomonas reinhardtii. Plant Biotechnol J. 2017;15(9):1130–1140. doi: 10.1111/pbi.12703
- Akram M, Khan MA, Ahmed N, et al. Cloning and expression of an anti-cancerous cytokine: human IL-29 gene in Chlamydomonas reinhardtii. AMB Expr. 2023;13(1):23. doi: 10.1186/s13568-023-01530-1
- Gregory JA, Shepley-Mctaggart A, Umpierrez M, et al. Immunotherapy using algal-produced Ara h 1 core domain suppresses peanut allergy in mice. Plant Biotechnol J. 2016;14(7):1541–1550. doi: 10.1111/pbi.12515
- Hirschl S, Ralser C, Asam C, et al. Expression and characterization of functional recombinant Bet v 1.0101 in the chloroplast of Chlamydomonas reinhardtii. Int Arch Allergy Immunol. 2017;173(1):44–50. doi: 10.1159/000471852
- Schroda M. Good news for nuclear transgene expression in Chlamydomonas. Cells. 2019;8(12):1534. doi: 10.3390/cells8121534
- Schroda M, Remacle C. Molecular advancements establishing Chlamydomonas as a host for biotechnological exploitation. Front Plant Sci. 2022;13:911483. doi: 10.3389/fpls.2022.911483
- Berthold P, Schmitt R, Mages W. An engineered Streptomyces hygroscopicus aph7'' gene mediates dominant resistance against hygromycin B in Chlamydomonas reinhardtii. Protist. 2002; 153(4):401–412. doi: 10.1078/14344610260450136
- Lumbreras V, Stevens DR, Purton S. Efficient foreign gene expression in Chlamydomonas reinhardtii mediated by an endogenous intron: foreign gene expression in Chlamydomonas. Plant J. 1998;14(4):441–447. doi: 10.1046/j.1365-313X.1998.00145.x
- Baier T, Wichmann J, Kruse O, Lauersen KJ. Intron-containing algal transgenes mediate efficient recombinant gene expression in the green microalga Chlamydomonas reinhardtii. Nucleic Acids Res. 2018;46(13):6909–6919. doi: 10.1093/nar/gky532
- Baier T, Jacobebbinghaus N, Einhaus A, et al. Introns mediate post-transcriptional enhancement of nuclear gene expression in the green microalga Chlamydomonas reinhardtii. PLoS Genet. 2020;16(7):1008944. doi: 10.1371/journal.pgen.1008944
- Picariello T, Hou Y, Kubo T, et al. TIM, a targeted insertional mutagenesis method utilizing CRISPR/Cas9 in Chlamydomonas reinhardtii. PLoS One. 2020;15(5):232594. doi: 10.1371/journal.pone.0232594
- Kasai Y, Harayama S. Construction of marker-free transgenic strains of Chlamydomonas reinhardtii using a Cre/loxP-mediated recombinase system. PLoS One. 2016;11(8):161733. doi: 10.1371/journal.pone.0161733
- Fischer N, Stampacchia O, Redding K, Rochaix J-D. Selectable marker recycling in the chloroplast. Mol Gen Genet. 1996; 251(3):373–380. doi: 10.1007/BF02172529
- Purton S, Rochaix J-D. Characterization of the ARG7 gene of Chlamydomonas reinhardtii and its application to nuclear transformation. Eur J Phycol. 1995;30(2):141–148. doi: 10.1080/09670269500650901
- Kindle KL, Schnell RA, Fernández E, Lefebvre PA. Stable nuclear transformation of Chlamydomonas using the Chlamydomonas gene for nitrate reductase. J Cell Biol. 1989;109(6):2589–2601. doi: 10.1083/jcb.109.6.2589
- Nelson JAE, Savereide PB, Lefebvre PA. The CRY1 gene in Chlamydomona reinhardtii: structure and use as a dominant selectable marker for nuclear transformation. Mol Cell Biol. 1994; 14(6):4011–4019. doi: 10.1128/mcb.14.6.4011-4019.1994
- Sizova I, Fuhrmann M, Hegemann P. A Streptomyces rimosus aphVIII gene coding for a new type phosphotransferase provides stable antibiotic resistance to Chlamydomonas reinhardtii. Gene. 2001;277(1):221–229. doi: 10.1016/s0378-1119(01)00616-3
- Stevens DR, Rochaix J-D, Purton S. The bacterial phleomycin resistance gene ble as a dominant selectable marker in Chlamydomonas. Mol Gen Genet. 1996;251(1):23–30. doi: 10.1007/BF02174340
- Goldschmidt-Clermont M. Transgenic expression of aminoglycoside adenine transferase in the chloroplast: A selectable marker of site-directed transformation of Chlamydomonas. Nucleic Acids Res. 1991;19(15):4083–4089. doi: 10.1093/nar/19.15.4083
- Cerutti H, Johnson AM, Gillham NW, Boynton JE. A eubacterial gene conferring spectinomycin resistance on Chlamydomonas reinhardtii: Integration into the nuclear genome and gene expression. Genetics. 1997;145(1):97–110. doi: 10.1093/genetics/145.1.97
- Bateman J, Purton S. Tools for chloroplast transformation in Chlamydomonas: expression vectors and a new dominant selectable marker. Mol Gen Genet. 2000;263(3):404–410. doi: 10.1007/s004380051184
- Larrea-Alvarez M, Young R, Purton S. A simple technology for generating marker-free chloroplast transformants of the green alga Chlamydomonas reinhardtii. In: Maliga P, editor. Chloroplast Biotechnology. New York: Humana, 2021. P. 293–304. doi: 10.1007/978-1-0716-1472-3_17
- Taunt HN, Jackson HO, Gunnarsson ÍN, et al. Accelerating chloroplast engineering: a new system for rapid generation of marker-free transplastomic lines of Chlamydomonas reinhardtii. Microorganisms. 2023;11(8):1967. doi: 10.3390/microorganisms11081967
- Greiner A, Kelterborn S, Evers H, et al. Targeting of photoreceptor genes in Chlamydomonas reinhardtii via zinc-finger nucleases and CRISPR/Cas9. Plant Cell. 2017;29(10):2498–2518. doi: 10.1105/tpc.17.00659
- Crozet P, Navarro FJ, Willmund F, et al. Birth of a photosynthetic chassis: a MoClo toolkit enabling synthetic biology in the microalga Chlamydomonas reinhardtii. ACS Synth Biol. 2018;7(9):2074–2086. doi: 10.1021/acssynbio.8b00251
- Kindle KL. High-frequency nuclear transformation of Chlamydomonas reinhardtii. PNAS USA. 1990;87(3):1228–1232. doi: 10.1073/pnas.87.3.1228
- Kindle KL, Richards KL, Stern DB. Engineering the chloroplast genome: Techniques and capabilities for chloroplast transformation in Chlamydomonas reinhardtii. PNAS USA. 1991;88(5):1721–1725. doi: 10.1073/pnas.88.5.1721
- Brown LE, Sprecher SL, Keller LR. Introduction of exogenous DNA into Chlamydomonas reinhardtii by electroporation. Mol Cell Biol. 1991;11(4):2328–2332. doi: 10.1128/mcb.11.4.2328-2332.1991
- Park RV, Asbury H, Miller SM. Modification of a Chlamydomonas reinhardtii CRISPR/Cas9 transformation protocol for use with widely available electroporation equipment. MethodsX. 2020;7:100855. doi: 10.1016/j.mex.2020.100855
- Wang L, Yang L, Wen X, et al. Rapid and high efficiency transformation of Chlamydomonas reinhardtii by square-wave electroporation. Biosci Rep. 2019;39(1):BSR20181210. doi: 10.1042/BSR20181210
- Yamano T, Iguchi H, Fukuzawa H. Rapid transformation of Chlamydomonas reinhardtii without cell-wall removal. J Biosci Bioeng. 2013;115(6):691–694. doi: 10.1016/j.jbiosc.2012.12.020
- Shimogawara K, Fujiwara S, Grossman A, Usuda H. High-efficiency transformation of Chlamydomonas reinhardtii by electroporation. Genetics. 1998;148(4):1821–1828. doi: 10.1093/genetics/148.4.1821
- Mini P, Demurtas OC, Valentini S, et al. Agrobacterium-mediated and electroporation-mediated transformation of Chlamydomonas reinhardtii: A comparative study. BMC Biotechnol. 2018;18(1):11. doi: 10.1186/s12896-018-0416-3
- Kang S, Jeon S, Kim S, et al. Development of a pVEC peptide-based ribonucleoprotein (RNP) delivery system for genome editing using CRISPR/Cas9 in Chlamydomonas reinhardtii. Sci Rep. 2020;10(1):22158. doi: 10.1038/s41598-020-78968-x
- Jinek M, Chylinski K, Fonfara I, et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science. 2012;337(6096):816–821. doi: 10.1126/science.1225829
- Ghribi M, Nouemssi SB, Meddeb-Mouelhi F, Desgagné-Penix I. Genome editing by CRISPR-Cas: a game change in the genetic manipulation of Chlamydomonas. Life (Basel). 2020;10(11):25. doi: 10.3390/life10110295
- Jiang W, Brueggeman AJ, Horken KM, et al. Successful transient expression of Cas9 and single guide RNA genes in Chlamydomonas reinhardtii. Eukaryot Cell. 2014;13(11):1465–1469. doi: 10.1128/EC.00213-14
- Guzmán-Zapata D, Sandoval-Vargas J, Macedo-Osorio K, et al. Efficient editing of the nuclear APT reporter gene in Chlamydomonas reinhardtii via expression of a CRISPR-Cas9 module. Int J Mol Sci. 2019;20(5):1247. doi: 10.3390/ijms20051247
- Karas BJ, Diner RE, Lefebvre SC, et al. Designer diatom episomes delivered by bacterial conjugation. Nat Commun. 2015;6:6925. doi: 10.1038/ncomms7925
- Diner RE, Bielinski VA, Dupont CL, et al. Refinement of the diatom episome maintenance sequence and improvement of conjugation-based DNA delivery methods. Front Bioeng Biotechnol. 2016;4:65. doi: 10.3389/fbioe.2016.00065
- Muñoz CF, Sturme MHJ, D’Adamo S, et al. Stable transformation of the green algae Acutodesmus obliquus and Neochloris oleoabundans based on E. coli conjugation. Algal Res. 2019;39:101453. doi: 10.1016/j.algal.2019.101453
- Poliner E, Takeuchi T, Du Z-Y, et al. Nontransgenic marker-free gene disruption by an episomal CRISPR system in the oleaginous microalga, Nannochloropsis oceanica CCMP1779. ACS Synth Biol. 2018;7(4):962–968. doi: 10.1021/acssynbio.7b00362
- Baidukova O, Kelterborn S, Sizova I, Hegemann P. Reverse genetics. In: Goodenough U, editor. The Chlamydomonas sourcebook. 3rd edit. Vol. 1: Introduction to Chlamydomonas and its laboratory use. Academic Press, 2023. P. 421–430. doi: 10.1016/B978-0-12-822457-1.00011-X
- Nievergelt AP, Diener DR, Bogdanova A, et al. Efficient precision editing of endogenous Chlamydomonas reinhardtii genes with CRISPR-Cas. Cell Rep Methods. 2023;3(8):100562. doi: 10.1016/j.crmeth.2023.100562
- Zadabbas Shahabadi H, Akbarzadeh A, Ofoghi H, Kadkhodaei S. Site-specific gene knock-in and bacterial phytase gene expression in Chlamydomonas reinhardtii via Cas9 RNP-mediated HDR. Front Plant Sci. 2023;14:1150436. doi: 10.3389/fpls.2023.1150436
- Jayshree A, Jayashree S, Thangaraju N. Chlorella vulgaris and Chlamydomonas reinhardtii: effective antioxidant, antibacterial and anticancer mediators. Indian J Pharm Sci. 2016;78:575–581. doi: 10.4172/pharmaceutical-sciences.1000155
- Chen K, Wang Y, Zhang R, et al. CRISPR/Cas genome editing and precision plant breeding in agriculture. Annu Rev Plant Biol. 2019;70:667–697. doi: 10.1146/annurev-arplant-050718-100049
- Salomé PA, Merchant SS. A series of fortunate events: introducing Chlamydomonas as a reference organism. Plant Cell. 2019;31(8):1682–1707. doi: 10.1105/tpc.18.00952
Supplementary files
![](/img/style/loading.gif)