Interdisciplinary approaches in plant breeding and genetics: on the anniversary of Academician N.A. Kolchanov

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Abstract

Nikolai Alexandrovich Kolchanov is known primarily as the founder of Russian bioinformatics and systems computer biology, a recognized world-class specialist in this field. Distinctive features of the strategy chosen by Academician Kolchanov in relation to fundamental and practical tasks are a comprehensive view of the problem and the ability to form an interdisciplinary team to solve it. A brief review is devoted to a systematic practice-oriented approach in the field of genetics, genomics, bioinformatics and plant breeding, which have been given special attention in the work of N.A. Kolchanov in recent years. The relationship of this activity with the approval of significant legal acts in the field of genetics is reflected. Analytics in the publication activity of the teams involved in this activity are given, reflecting the time of active development of new trends and the multidisciplinary nature of research.

About the authors

Elena K. Khlestkina

N.I. Vavilov All-Russian Institute of Plant Genetic Resources – VIR; Institute of Cytology and Genetics Siberian Branch of Russian Academy of Sciences

Author for correspondence.
Email: director@vir.nw.ru
ORCID iD: 0000-0002-8470-8254
SPIN-code: 3061-1429
Scopus Author ID: 6603368411
ResearcherId: T-2734-2017

Dr. Sci. (Biol.), Professor, Director

Russian Federation, Saint Petersburg; Novosibirsk

Vadim K. Khlestkin

Institute of Cytology and Genetics Siberian Branch of Russian Academy of Sciences; All-Russian Research Institute of Genetics and Breeding of farm animals – Branch of the L.K. Ernst Federal Research Center for Animal Husbandry

Email: khlestkin@bionet.nsc.ru
ORCID iD: 0000-0001-9605-8028
SPIN-code: 6367-2970
Scopus Author ID: 56368129500

Cand. Sci. (Chem.), Director

Russian Federation, Novosibirsk; Pushkin, Saint Petersburg

References

  1. Heinemeyer T, Wingender E, Reuter I, et al. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res. 1998;26(1):362–367. doi: 10.1093/nar/26.1.362
  2. Kolchanov NA, Podkolodnaya OA, Ananko EA, et al. Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Res. 2000;28(1):298–301. doi: 10.1093/nar/28.1.298
  3. Ivanisenko VA, Pintus SS, Grigorovich DA, Kolchanov NA. PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. Nucleic Acids Res. 2004;32(S2):W549–W554. doi: 10.1093/nar/gkh439
  4. Ivanisenko VA, Pintus SS, Grigorovich DA, Kolchanov NA. PDBSite: a database of the 3D structure of protein functional sites. Nucleic Acids Res. 2005;33(S1):D183–D187. doi: 10.1093/nar/gki105
  5. Kolpakov FA, Ananko EA, Kolesov GB, Kolchanov NA. GeneNet: a gene network database and its automated visualization. Bioinformatics. 1998;14(6):529–537. doi: 10.1093/bioinformatics/14.6.529
  6. Ananko EA, Podkolodny NL, Stepanenko IL, et al. GeneNet: a database on structure and functional organization of gene networks. Nucleic Acids Res. 2002;30(1):398–401. doi: 10.1093/nar/30.1.398
  7. bionet.nsc.ru [Internet]. Federal’nyi issledovatel’skii tsentr Institut tsitologii i genetiki Sibirskogo otdeleniya RAN [cited: 2021 Dec 29]. Available from: https://www.bionet.nsc.ru/ (In Russ.)
  8. nrckigc.ru [Internet]. Kurchatovskii genomnyi tsentr [cited: 2021 Dec 29]. Available from: https://nrckigc.ru/ (In Russ.)
  9. docs.cntd.ru. Ehlektronnyi fond pravovykh i normativno-tekhnicheskikh dokumentov [Internet]. Pis’mo FANO Rossii ot 14 iyulya 2016 goda N007–18.2–11/МК-502 [cited: 2021 Dec 29]. Available from: https://docs.cntd.ru/document/456079505/ (In Russ.)
  10. ckp-rf.ru [Internet]. Nauchno-tekhnologicheskaya infrastruktura Rossiiskoi Federatsii: tsentry kollektivnogo pol’zovaniya nauchnym oborudovaniem i unikal’nye nauchnye ustanovki [cited: 2021 Dec 29]. Available from: https://ckp-rf.ru/ (In Russ.)
  11. pm.cytogen.ru [Internet]. Proektnyi ofis upravleniya bioresursnymi kollektsiyami [cited: 2021 Dec 29]. Available from: http://pm.cytogen.ru/ (In Russ.)
  12. Lashin SA, Afonnikov DA, Genaev MA, et al. An integrated information system on bioresource collections of the FASO of Russia. Vavilov Journal of Genetics and Breeding. 2018;22(3):386–393. (In Russ.) doi: 10.18699/VJ18.360
  13. Kolchanov NA. Bioresursnye kollektsii institutov Ministerstva nauki i vysshego obrazovaniya: opyt inventarizatsii i razvitiya. Book of Abstracs VII international congress and associate symposiums of Vavilov society of geneticists and breeders on the 100th anniversary of the department of genetics of Saint Petersburg state University. June 18–22, 2019. Saint Petersburg, Russia: Izdatel’stvo VVM, 2019. P. 399. Available from: https://events.spbu.ru/eventsContent/events/2018/vogis/VII%20VSGB%20Congress%20Abstracts%202019.pdf (In Russ.)
  14. minobrnauki.gov.ru [Internet]. Protokol No 2021-1930-ФП5-9/3 [cited: 2021 Dec 29]. Available from: https://minobrnauki.gov.ru/upload/iblock/72e/ezs426e0fpjhm3tdytbpgx01rubwklr3.PDF (In Russ.)
  15. Khlestkina EK. Geneticheskie resursy Rossii: ot kollektsii k bioresursnym tsentram. Proceedings on applied botany, genetics and breeding. 2022;183(1):9–30. (In Russ.) doi: 10.30901/2227-8834-2022-1-9-30
  16. Kolchanov NA, Kochetov AV, Salina EA, et al. Sostoyanie i perspektivy ispol’zovaniya marker-orientirovannoi i genomnoi selektsii rastenii. Vestnik Rossijskoj akademii nauk. 2017;87(4):348–354. (In Russ.) doi: 10.7868/S0869587317040107
  17. Mironova VV, Omelyanchuk NA, Yosiphon G, et al. A plausible mechanism for auxin patterning along the developing root. BMC Syst Biol. 2010;4:98. doi: 10.1186/1752-0509-4-98
  18. Mironova VV, Omelyanchuk NA, Novoselova ES, et al. Combined in silico / in vivo analysis of mechanisms providing for root apical meristem self-organization and maintenance. Ann Bot. 2012;110(2):349–360. doi: 10.1093/aob/mcs069
  19. Omelyanchuk NA, Wiebe DS, Novikova DD, et al. Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots. Sci Rep. 2017;7:2489. doi: 10.1038/s41598-017-02476-8
  20. Genaev MA, Doroshkov AV, Pshenichnikova TA, et al. Extraction of quantitative characteristics describing wheat leaf pubescence with a novel image-processing technique. Planta. 2012;236:1943–1954. doi: 10.1007/s00425-012-1751-6
  21. Slynko NM, Goryachkovskaya TN, Shekhovtsov SV, et al. The biotechnological potential of the new crop, Miscanthus cv. Soranovskii. Vavilov Journal of Genetics and Breeding. 2013;17(4/1):765–771. (In Russ.)
  22. Khlestkin VK, Peltek SE, Kolchanov NA. Review of direct chemical and biochemical transformations of starch. Carbohydr Polym. 2018;181:460–476. doi: 10.1016/j.carbpol.2017.10.035
  23. Khlestkin VK, Peltek SE, Kolchanov NA. Target genes for development of potato (Solanum tuberosum L.) Cultivars with desired starch properties (review). Agricultural Biology. 2017;52(1):25–36. (In Russ.) doi: 10.15389/agrobiology.2017.1.25eng

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2. Figure 1. Distribution of publications by N.A. Kolchanov by branches of knowledge (according to Web of Science). Link access: https://www.webofscience.com/wos/woscc/basic-search. Date of access: 31.12.2021

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3. Figure 2. Dynamics of publication activity of the Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences in the direction of plant bioinformatics (a) and individual author's contribution to this publication activity (b): search in the Scopus database using the AF-ID algorithm (Institute of Cytology and Genetics Siberian Branch of the Russian Academy of Sciences 60068684) AND ( ( plant ) ) AND ( bioinformatics ). Access via the link: https://www.scopus.com/. Date of access: 29.12.2021

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4. Figure 3. Dynamics of publication activity of the Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences on potato research (a) and distribution of publications by field of knowledge (b): search in the Scopus database using the AF-ID algorithm (Institute of Cytology and Genetics Siberian Branch of the Russian Academy of Sciences 60068684 ) AND ( potato ). Access mode: https://www.scopus.com/. Date of access: 29.12.2021

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5. Figure 4. Academician N.A. Kolchanov at demonstration potato crops during the Joint Scientific Event Scientific and Practical Conference "Theoretical Foundations and Applied Research in Potato Breeding and Seed Production" (31.07–01.08.2017) and "Field Day: Ecological-geographical and production testing of new varieties of potatoes" (01.08 -02.08.2017), held in Novosibirsk as part of the preparation of the subprogram "Development of selection and seed production of potatoes in the Russian Federation" of the Federal Scientific and Technical Program for the Development of Agriculture for 2017–2025. (Photo courtesy of V.S. Koval, ICG SB RAS.)

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Copyright (c) 2022 Khlestkina E.K., Khlestkin V.K.


 


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