ANALYSIS OF DNA CONTENT AND NUCLEAR MICROSATELLITE LOCI OF SOME Betula L. REPRESENTATIVES
- Authors: Medvedeva S.O.1, Cherepanova O.E.1, Filippov E.G.1, Teptina A.Y.2
-
Affiliations:
- Botanical Garden, Russian Academy of Sciences, Ural Branch
- Ural Federal University
- Issue: No 6 (2024)
- Pages: 44-51
- Section: RESEARCH ARTICLES
- URL: https://journals.rcsi.science/2311-1410/article/view/297575
- DOI: https://doi.org/10.15372/SJFS20240606
- ID: 297575
Cite item
Full Text
Abstract
Dwarf birch ( Betula nana L.) is a circumpolar low shrub common in the northern hemisphere. Previously, it was suggested that dwarf birch hybridize with a sympathetic species - the downy birch ( Betula pubescens Ehrh.), with the formation of triploid hybrids in the northern regions of Western Eurasia. Data on the presence and intensity of these species hybridization on the territory of the Russian Federation are scarce and require additional study and verification. The purpose of this study was to study the ploidy level of some birch representatives growing in the mountain tundra of the Altai Mountain range to identify hybrid forms. The work used the flow cytometry method in combination with the analysis of nuclear microsatellite loci. The average DNA content of the studied dwarf birch and silver birch ( B. pendula Roth) samples was 2С = 0.966 pg and 2С = 0.974 pg correspondingly, while DNA content of the putative hybrid sample was 1.46 times higher 2C = 1.413 pg, indicating its probable triploid genome. Analysis of nuclear microsatellite loci confirmed the data obtained by flow cytometry. It was shown that nuclear loci L3.1, L7.3, L1.10, L5.4 are most suitable for identifying triploid hybrid birch samples. The work performed confirms the existence of rare triploid hybrids dwarf birch and downy birch in populations of dwarf birch trees growing in the mountain tundra forest in Altai. The analysis shows that the flow cytometry method in combination with microsatellite analysis is an effective tool for searching and verifying triploid birch hybrids.
Keywords
About the authors
S. O. Medvedeva
Botanical Garden, Russian Academy of Sciences, Ural Branch
Author for correspondence.
Email: so.medvedeva@gmail.com
Yekaterinburg, Russian Federation
O. E. Cherepanova
Botanical Garden, Russian Academy of Sciences, Ural Branch
Email: botgarden.olga@gmail.com
Yekaterinburg, Russian Federation
E. G. Filippov
Botanical Garden, Russian Academy of Sciences, Ural Branch
Email: filorch@mail.ru
Yekaterinburg, Russian Federation
A. Yu. Teptina
Ural Federal University
Email: ateptina@gmail.com
Yekaterinburg, Russian Federation
References
- Агапова Н. Д., Архарова К. Б., Вахтина Л. И., Земскова Е. А., Тарвис Л. В. Числа хромосом цветковых растений флоры СССР: семейства Aceraceae - Menyanthaceae. Л.: Наука. Ленингр. отд-ние, 1990. 233 с
- Князев М. С., Третьякова А. С., Подгаевская Е. Н., Золотарева Н. В., Куликов П. В. Конспект флоры Свердловской области. Ч. III: Двудольные растения (Aristolochiaceae - Monotropaceae) // Фиторазнообразие Восточной Европы. 2018. Т. 12. № 2. С. 4-95
- Маслов А. А., Баранов О. Ю., Сирин А. А. Идентификация видов берез в заболоченных лесах центра Русской равнины по результатам молекулярно-генетического анализа // Лесоведение. 2019. № 3. C. 177-187
- Медведева С. О., Черепанова О. Е. Таксономические вопросы рода Betula // Сиб. лесн. журн. 2023. № 2. C. 65-75
- Медведева С. О., Черепанова О. Е., Филиппов Е. Г., Копориков А. Р. Использование ITS-маркеров для определения видовой принадлежности берез секции Apterocaryon // Пробл. ботаники Юж. Сибири и Монголии. 2023. Т. 22. № 2. С. 187-190
- Ревушкин А. С. Высокогорная Флора Алтая. Томск: Изд-во Том. ун-та, 1988. 320 c
- Цвелев Н. Н. Определитель сосудистых растений Северо-Западной России (Ленинградская, Псковская и Новгородская области). СПб.: СПХФА, 2000. 782 с
- Чхобадзе А. Б., Филиппов Д. А., Левашов А. Н. Сосудистые растения Вологодской части Андомской возвышенности // Фиторазнообразие Вост. Европы. 2014. T. 8. № 1. C. 20-42
- Anamthawat-Jónsson K., Thórsson T., Temsch E. M., Greilhuber J. Icelandic birch polyploids - the case of a perfect fit in genome size // J. Bot. 2010. V. 2. Article 347254. 9 p
- Ashburner K., McAllister H. A. The genus Betula: A taxonomic revision of birches. L.: Royal Bot. Gardens, Kew, 2013. 432 p
- Cherepanova O., Medvedeva S., Filippov E., Skaptsov M., Ivchenko T., Teptina A. Biodiversity evolution of a shrub Betula nana L. populations in the Urals // Int. J. For. Res. 2024. V. 2024. Iss. 1. Article 2644583. 14 p
- Doležel J., Greilhuber J., Suda J. Estimation of nuclear DNA content in plants using flow cytometry // Nat. Protoc. 2007. V. 2. Iss. 9. P. 2233-2244
- Doyle J. J., Doyle J. L. Isolation of plant DNA from fresh tissue // Focus. 1990. V. 12. N. 1. P. 13-15
- Ellstrand N. C., Whitkus R., Rieseberg L. H. Distribution of spontaneous plant hybrids // PNAS. 1996. V. 93. Iss. 10. P. 5090-5093
- Furlow J. The genera of Betulaceae in the southeastern United States // J. Arnold Arboret. 1990. V. 71. N. 1. P. 1-67
- Galbraith D. W., Lambert G. M., Macas J., Dolezel J. Analysis of nuclear DNA content and ploidy in higher plants // Curr. Protocols in Cytometry. 1997. V. 2. Iss. 1. Chapter 7 (1). Unit 7.6. Article cy0706s02
- Hampe A., Petit R. J. Conserving biodiversity under climate change: the rear edge matters // Ecol. Lett. 2005. V. 8. Iss. 5. P. 461-467
- Jadwiszczak K., Banaszek A., Jabłonska E., Sozinov O. V. Chloroplast DNA variation of Betula humilis Schrank. in Poland and Belarus // Tree Genet. Genom. 2012. V. 8. Iss. 5. P. 1017-1030
- Karlsdóttir L., Hallsdóttir M., Thorsson A., Anamthawat-Jonsson K. Early Holocene hybridisation between Betula pubescens and B. nana in relation to birch vegetation in Southwest Iceland // Rev. Palaeobot. Palynol. 2012. V. 181 (G 3). P. 1-10
- Koropachinskiy I. Yu. North Asian woody plants. In 2 vol. Novosibirsk: GEO Acad. Publ., 2015. V. 1: Taxaceae - Rosaceae, 527 p.; V. 2: Fabaceae - Asteraceae, 391 p
- Kulju K. K. M., Pekkinen M., Varvio S. Twenty-three microsatellite primer pairs for Betula pendula (Betulaceae) // Molecul. Ecol. Notes. 2004. V. 4. Iss. 3. P. 471-473
- Palmé A. E., Su Q., Palsson S., Lascoux M. Extensive sharing of chloroplast haplotypes among European birches indicates hybridization among Betula pendula, B. pubescens and B. nana // Molecul. Ecol. 2004. V. 13. Iss. 1. P. 167-178
- Peñalba J., Runemark A., Meier J., Singh P., Wogan G., Sánchez-Guillén R., Mallet J., Rometsch S., Menon M., Seehausen O., Kulmuni J., Pereira R. The role of hybridization in species formation and persistence // Cold Spring Harbor Perspectives in Biol. 2024. V. 16. Iss. 3. Article a041445. 24 p
- Pfosser М., Amon A., Lelle Т., Heberle-Bors E. Evaluation of sensitivity of flow cytometry in detecting aneuploidy in wheat using disomic and ditelosomic wheat-rye addition lines // Cytometry. 1995. V. 21. Iss. 4. P. 387-393
- Schley R. J., Twyford A. D, Pennington R. T. Hybridization: a ‘double-edged sword’ for Neotropical plant diversity // Bot. J. Linnean Soc. 2022. V. 199. Iss. 1. P. 331-356
- Temsch E. M., Greilhuber J., Krisai R. Genome size in liverworts // Preslia. 2010. V. 82. P. 63-80
- Thorsson Æ. Th., Palsson S., Sigurgeirsson A., Anamthawat-Jonsson K. Morphological variation among Betula nana (diploid), B. pubescens (tetraploid) and their triploid hybrids in Iceland // Ann. Bot. 2007. V. 99. Iss. 6. P. 1183-1193
- Truong C., Palmé A. E., Felber F., Naciri-Graven Y. Isolation and characterization of microsatellite markers in the tetraploid birch, Betula pubescens ssp. tortuosa // Molecul. Ecol. Notes. 2005. V. 5. Iss. 1. P. 96-98
- Wang N., McAllister H. A., Bartlett P. R., Buggs R. J. A. Molecular phylogeny and genome size evolution of the genus Betula (Betulaceae) // Ann. Bot. 2016. V. 117. Iss. 6. P. 1023-1035
Supplementary files
