Dynamics of Streptococcus pneumoniae serotype structure in children for the period 2016–2022

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Abstract

BACKGROUND: The need for microbiological monitoring of the distribution of pneumococcal serotypes is associated with changes that occur during routine immunization of children with pneumococcal vaccines.

AIM: To characterize the changes in the serotype structure of Streptococcus pneumoniae obtained from healthy preschool children between 2016 and 2022.

MATERIALS AND METHODS: In total, 1250 healthy children aged <6 years attending kindergartens were examined in multicenter studies (2016–2018 and 2020–2022). Nasopharyngeal pneumococcal isolates (n=265) were obtained using the culture method. S. pneumoniae serotype was determined using polymerase chain reaction.

RESULTS: Between 2016 and 2018, the prevalence of pneumococcal carriage decreased from 27.3 to 17.3%, and by 2022, it increased to 25.6%. Moreover, the correspondence of S. pneumoniae serotypes to the antigenic composition of the 13-valent pneumococcal vaccine decreased from 48.8 to 9.4% and the composition of the 20-valent vaccine from 75.6 to 39.1%. The proportion of “non-vaccine” types of pneumococcus increased from 22% in 2016 to 61% in 2022. Among the “non-vaccine” serotypes/groups, 15AF, 6CD, 23A, and 35F/47F were predominant, and new variants were also discovered: 23B and 35B. The serotypes included in the 13-valent conjugate vaccine were detected among unvaccinated children and were represented by variants 19F, 6A and 6B, 23F. Throughout the observation period, pneumococci of serotypes/groups 15BC, 11AD, and 10A were detected with high frequency.

CONCLUSIONS: Because of the elimination of a significant part of S. pneumoniae “vaccine” serotypes in 2016–2022, the concordance of circulating variants with the antigenic composition of pneumococcal conjugate vaccines significantly decreased. In addition, the new types detected with high frequency are not included in existing pneumococcal vaccines, which necessitates the creation of new immunobiological drugs for pneumococcal infection prevention.

About the authors

Irina N. Protasova

Professor V.F. Voino-Yasenetsky Krasnoyarsk State Medical University

Author for correspondence.
Email: ovsyanka802@gmail.com
ORCID iD: 0000-0001-6521-8615
SPIN-code: 4599-4410

MD, Dr. Sci. (Medicine)

Russian Federation, Krasnoyarsk

Irina V. Feldblium

Perm State Medical University named after Academician E.A. Wagner

Email: irinablum@mail.ru
ORCID iD: 0000-0003-4398-5703
SPIN-code: 3394-9879

MD, Dr. Sci. (Medicine), Professor

Russian Federation, Perm

Natalia V. Bakhareva

Krasnoyarsk Regional Center for AIDS Prevention and Control

Email: bakhareva@kraszdrav.ru
ORCID iD: 0000-0003-2868-1509
Russian Federation, Krasnoyarsk

Ludmila V. Zinovieva

Krasnoyarsk City Children’s Hospital No. 8

Email: Lzinovieva@gdb8.ru
ORCID iD: 0009-0005-5176-6190
Russian Federation, Krasnoyarsk

Sergey V. Sidorenko

Children’s Scientific and Clinical Center for Infectious Diseases

Email: sidorserg@yandex.ru
ORCID iD: 0000-0003-3550-7875
SPIN-code: 7738-7060
Russian Federation, Saint Petersburg

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Supplementary files

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1. JATS XML
2. Fig. 1. Dynamics of Streptococcus pneumoniae serotype distribution in healthy preschool children in 2016–2022.

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