Vol 63, No 2 (2016)

DNA methylation is the most stable epigenetic modification with a well studied maintenance mechanism in the mitotically dividing cell generations. The plant DNA is methylated at sites of three types, CG, CHG and CHH. The methylation mechanisms of these sites are different and involve functional activity of various DNA methyltransferases and their accessory factors, that largely define the genome locus specificity of methylation. The genome methylation pattern, DNA methylome, in plants is inheritable not only in the dividing cell generations but also to a considerable extent in generations of the whole plants. A great number of spontaneous epimutations, both natural and experimental ones, are known, that have discernible phenotypic manifestations and are stably inheritable in the plant generations as Mendelian traits. A fundamental distinction of such epimutations from classical mutations is their reversibility. The higher plants epigenome is much more flexible compared with their genome. The single-nucleotide epimutation frequency is hundredfolds higher than the mutation frequency. This variability is probably a main source of the plant phenotypic plasticity, that enables them to adapt to changing environment on the time scales too short for adaptive mutations to occur. A dramatic increase in the plant population epigenetic variability on a practically unchanged genetic context is observed when the essential environmental factors are rapidly changing. Being flexible enough for such adaptive changes, on the other hand, epigenome is stable enough for these adaptive variations to be inheritable between the plant generations. Obviously, the epigenetic variations, that enable plants to adapt to the fast changing environmental factors, serve as material for natural selection and other evolutionary processes on the respective time scales. A still another aspect of evolutionary significance is a capability of epigenetic mechanisms to induce transient bursts of genetic variability by transposon mobilization.

In this review, the issues of photobiological synthesis and release of isoprene by chlorophyll-containing cells are considered from the viewpoint of thermodynamics of open nonequilibrium systems, with an emphasis on fundamental significance of the entropy phenomenon. The excretory function of the living cell is envisioned as a result of the total release of energy by dissipative structures. The living cell metabolism represents a continuous transformation of a huge number of biologically significant chemical substances. The complex of these transformations results in maintenance of cell homeostasis. The cell functioning can be viewed as energy flows and matter conversions occurring on biological matrices. The flows of irreversible metabolic reactions proceed under steady-state condition of the system and ensure its balanced disequilibrium. The hypotheses considered in this review are based on the principles of energy dynamics; they permit the description of cell metabolism from the laws of nonequilibrium thermodynamics of open systems. It is concluded that the biogenic release of isoprene ensures entropy dissipation, which is required for regulation of fluxes leading to the formation of terpenoids and allowing the maintenance of cell homeostasis.

Heat stress is one of the major abiotic stresses and affects plant productivity in a negative manner. Photosynthetic processes are largely influenced by heat stress. In spinach (Spinacia oleracea L.) leaves at 40°C the decrease in PSII activity was mainly due to the decreased efficiency to capture excitation energy, increased yield of regulatory energy dissipation mechanism Y(NPQ), and decreased quantum yield Y(II). According to the results below 45°C PSI is stable and protected while at a higher temperature stability of PSI was reduced and protection was not sufficient. Therefore, we conclude that cyclic electron flow plays an important role in protecting PSI from heat stress.

Phleum alpinum L. and Poa pratensis L. are major forage species that often grow in various environments in Tierra del Fuego, Argentina. We performed a greenhouse experiment to investigate how these species acclimate to the different irradiance of the microenvironments where they grow. Both grass species were exposed to three levels of incident irradiance (I4: 4%; I26: 26%, or I64: 64% of ambient sunlight) and two levels of soil moisture content (M30: 30–50% or M60: 60–80% of field capacity) under greenhouse conditions. As irradiance levels increased, the contents of chlorophyll per unit surface area and fresh weight basis increased, and the chlorophyll a/b and carotenoids/chlorophyll ratio also increased. Maximum photosynthetic rate and the light compensation point increased with increasing light availability. Values for these variables varied with time. However, the relationship of these values was not modified in P. alpinum between the irradiance treatments. Contrarily, temporal changes of those variables showed that the maximum photosynthetic rate was similar to that in March in all treatments in P. pratensis. Results indicated that P. alpinum and P. pratensis were able to acclimate to the various experimental environments.

Effect of different duration of dehydration of the apices isolated from in vitro plants on genetic stability was investigated in regenerated plants of wild strawberry (Fragaria vesca L., var. alpine) recovered after cryopreservation according to a precultivation-dehydration protocol. Plant material belongs to a clone (cv. Reine des Vallees) that has been maintained in vitro for more than 25 years in Timiryazev Institute of Plant Physiology. It was shown that duration of desiccation the apices before freezing appreciably affected the rate of postcryogenic recovery of plant growth and coefficient of their subsequent propagation. After 5-h-long desiccation, apices were notable for the highest growth rate. The plants restored from such apices also had the highest coefficient of propagation. For DNA analysis, the samples of leaves were taken separately from each plant after hardening and after cryopreservation. According to the results of RAPD, ISSR, and REMAP analyses, the plants from the chosen clone of strawberry showed some genetic variation prior to cryopreservation (percentage of polymorphic fragments was 9.0%). Plant adaptation to cold did not change the level of genetic variation. Among postcryogenic regenerants, morphologically modified plant forms were not observed, with the level of DNA marker variation decreasing almost two times irrespective of the duration of dehydration. However, in one plant restored after 5-h-long dehydration and cryogenic freezing, a 1200 bp fragment of DNA was lacking, which was detected in all other examined samples (frequency of deviation was 0.9%). Earlier, we did not reveal plant polymorphism of investigated strawberry clone associated with this fragment. Probably, this modification of DNA resulted from the exposure of plant material to dehydration and freezing in liquid nitrogen.

Mapping chromosomal loci responsible for seven morphological and five biochemical traits of quality in populations of doubled haploid lines of leafy, rooted, and oilseed crops of Brassica rapa L. species was performed for the first time. In total, 140 quantitative trait loci (QTLs) were mapped determining manifestation of the studied morphological and biochemical economically important traits of quality under field and greenhouse conditions; the control of the same traits under different growth conditions or simultaneous control of several traits by one locus were noted. Molecular markers genetically linked with the selected QTLs were detected. The block genomic structure of the genetic components (chromosomal loci and linkage groups) determining manifestation of morphological and biochemical traits of quality that make B. rapa plants nutritionally valuable is discussed for the first time. The conclusion is drawn that the revealed QTLs and identified molecular markers may be of interest for the forthcoming study of genetic control by them of economically important characters and for the marker assisted selection in B. rapa.

MicroRNAs (miRNAs) are small endogenous RNAs, involved in plant growth and development as well as in stress responses. Among them, some are highly evolutionally conserved in the plant kingdom, which provides a powerful strategy for identifying miRNAs in a new species. Sweet potato (Ipomoea batatas L.) is one of the important food crops in the world, but few of its miRNAs have been determined. In this study, a total of 24 conserved miRNAs belonged to 14 miRNA families, and 16 novel miRNAs were identified by deep sequencing. Using previously established protocols, a total of 48 potential target genes were predicted for the conserved and novel miRNAs. These target genes are involved in transcription, metabolism, defense response, oxidationreduction processes, etc. Overall, this study provides information concerning the miRNAs precursors in I. batatas, mature miRNAs, and miRNA targets, and it is valuable as the basis for the future research of miRNA functions in I. batatas.