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Том 53, № 3 (2019)

Article

The Potential Role of SnRK1 Protein Kinases in the Regulation of Cell Division in Arabidopsis thaliana

Krasnoperova O., Buy D., Goriunova I., Isayenkov S., Karpov P., Blume Y., Yemets A.

Аннотация

It is known that the sucrose nonfermenting-1 (SNF1)-related protein kinase (SnRK1) subfamily participates in the regulation of carbohydrate metabolism and energy balance. These enzymes are multifunctional and can participate in many other important cellular processes. The role of the SnRK1 protein kinases (KIN10 and KIN11) in the regulation of cell division in Arabidopsis thaliana has been studied in this work. The KIN10 and KIN11 gene knockout lines of A. thaliana were used for this purpose (http://arabidopsis.info/). A low mitotic index was recorded in cells of these mutant lines and a decreased expression level was shown in the cell proliferation markers—the CYCB1;1 gene (B1 type cyclin) and the plant homolog BRCA1 (Breast Cancer Suppressor Protein). The significantly lower mitotic index and expression level of CYCB1;1 and BRCA1 were observed in the mutants grown in the conditions of energy deficiency. The higher expression of CYCB1;1/BRCA1 and KIN10/KIN11 genes was also recorded in the suspension culture of A. thaliana compared with intact sprouts. These data may confirm a possible role of the KIN10/KIN11 protein kinases in the regulation of cell proliferative activity.

Cytology and Genetics. 2019;53(3):185-191
pages 185-191 views

Effects of Exogenous Cytokinins on Spore Germination and Gametophyte Morphogenesis of Dryopteris filix-mas (L.) Schott in vitro Culture

Romanenko K., Kosakivska I., Babenko L., Vasheka O., Romanenko P., Negretsky V., Minarchenko V.

Аннотация

The impact of exogenous cytokinins (kinetin, zeatin, 6-benzylaminopurine, and N6-2-isopentenyladenine) on the pattern of Dryopteris filix-mas (L.) Schott spore germination, gametophyte growth and morphology in vitro have been studied. It was found that all studied cytokinins significantly retarded spore germination, inhibited gametophyte growth, caused deformations and decrease in the thallus size, and suppressed the development of reproductive structures and sporophyte growth at the concentration of 10–5 М. The reduction of the hormone concentration to 10–8 М stimulated the gametophyte development, induced cell divisions, particularly in the apical zone, due to which some of thalli were deformed, promoted the production of rhizoids, affected the formation of antheridia and archegonia, and slowed the sporophyte development.

Cytology and Genetics. 2019;53(3):192-201
pages 192-201 views

Karyological Study of Siberian Larch Species Larix sibirica and Larix gmelinii in Taimyr

Sedel’nikova T., Pimenov A.

Аннотация

A comparative study of karyotypes of two Siberian species of larch—L. sibirica and L. gmelinii—growing in the zone of forest-tundra on the Taimyr Peninsula was carried out. The number of chromosomes has been analyzed and the increase in chromosomal instability in larches in forest-tundra conditions has been shown. The size and morphology of chromosomes and the localization and frequency of secondary constrictions in chromosomes of L. sibirica and L. gmelinii were estimated. The parameters of chromosomes in polyploid cells of L. gmelinii were studied. The asymmetry of karyotypes of L. sibirica and L. gmelinii was analyzed. The spectrum and frequency of chromosome rearrangements in L. sibirica and L. gmelinii were studied. Using the data of the karyological analysis, the issues of differentiation and adaptation of the investigated larch species in Taimyr are discussed.

Cytology and Genetics. 2019;53(3):202-211
pages 202-211 views

On Genotyping Bacterial Strains of the Genera Pectobacterium and Pseudomonas: Pathogens of Bacterioses in Potatoes

Terletskiy V., Lazarev A.

Аннотация

Molecular-genetic research methods make it possible to identify phytopathogens with comprehensive characteristics of their hereditary material. We suggest a genotyping method based on the use of two restriction endonucleases for the cleavage of bacteria’s genomic DNA. Taq DNA polymerase added to the reaction mixture provides labeling of DNA fragments with biotinylated deoxycytosinetriphosphate (Bio-dCTP). The label is only incorporated into DNA having 3-prime recessed ends formed by the first enzyme. The second restriction endonuclease produces only blunt ends of fragments that are unable to incorporate the label. As a result of the DDSL (double digest selective label) reaction, 20–50 distinct DNA fragments are visualized on the filter, the amount and distribution of which are specific for each bacterial strain. This research was carried out using two pairs of restriction enzymes (XbaI/DraI and XbaI/Eco24I). The results indicate the same discriminatory capacity of these enzymes. Some advantage was noted for the XbaI/DraI combination, which makes it possible to detect differences in the region of longer DNA fragments in genetic profiles. The genetic profile generated by the BcuI/Eco32I pair of enzymes in Ps. fluorescens 894 was significantly different from that of Ps. xanthochlora, which could be anticipated while comparing these two species. In general, the results of genotyping agreed with the data on the origin of bacterial strains. In particular, microorganisms with the same genetic profile, D822 and D828, G399 and G400, as well as C960 and C966, were obtained from affected tubers of the same experimental field. This suggests the possibility of the contact spread of the pathogen. In some cases, the identity of strains was observed, despite their different geographic origin. This fact confirms contamination that occurred in the past during the use of the foreign seed potato.

Cytology and Genetics. 2019;53(3):212-218
pages 212-218 views

Site-Directed Mutagenesis of Tryptophan Residues in the Structure of the Catalytic Module of Tyrosyl-tRNA Synthetase from Bos taurus

Zayets V., Tsuvarev A., Kolomiiets L., Kornelyuk A.

Аннотация

Site-directed mutagenesis of the N-terminal catalytic module of Bos taurus tyrosyl-tRNA synthetase (mini-BtTyrRS) with the substitution of three Trp residues by Ala residues in its structure using the modified QuikChange method was performed to study structural dynamic and functional properties of the protein by fluorescence spectroscopy. Point substitutions of tryptophan codons TGG with alanine codons GCG in the cDNA nucleotide sequence of the tyrosyl-tRNA synthetase catalytic module cloned in expression plasmid pET-30a were obtained during sequential PCR reactions using the developed primers. As a result, mini-BtTyrRS cDNAs, whose sequences contain only one tryptophan codon in each of the three positions in the protein structure, were obtained.

Cytology and Genetics. 2019;53(3):219-226
pages 219-226 views

Application of the Pronuclear Scoring System for Predicting the Morphology and Ploidy of Early Human Embryos

Ilyin I., Nikitin O., Gontar J., Buderatska N., Verlinsky O.

Аннотация

The efficiency of in vitro fertilization and embryo transfers into human uteri is low, because approximately 50% of embryos transferred into the uterine cavity are capable to continue their development. This situation has generated the problem of early diagnosis of embryo potential at the stage preceding the selection of morphologically and chromosomally good quality blastocysts. The fertilization quality was assessed 16–18 h after an intracytoplasmic sperm injection (ICSI) micromanipulation by the presence of pronuclei using Z-scores. We examined the size and the location of pronuclei relative to the cell center, the number of nucleoli, and their distribution. The best development and, respectively, the highest implantation potential were demonstrated by embryos developed from zygotes of the Z1 category. Zygotes Z2 and Z3 also formed AA quality blastocysts on day 5. None of the fertilized oocytes forming zygote Z4 developed into a viable embryo. We have established differences in the capability to form AA quality blastocysts between zygotes of categories Z1, Z2, and Z3 and the category Z4 as well as between categories Z1 and Z3. It has been found that the highest number of embryos in which the number of the studied chromosomes corresponded to the norm was formed from zygotes of Z1 and Z2 categories, and a significant difference in the number of embryos in which aneuploidy has not been diagnosed has been found in embryos formed from zygotes of Z1, Z2, and Z3 categories compared with type Z4 zygotes.

Cytology and Genetics. 2019;53(3):227-232
pages 227-232 views

Evaluation into the Role of the VEGF Gene Polymorphism rs2010963 in the Development of Rosacea and its Relationship with Clinical Subtypes of the Disease

Babadjanov O., Karimov H., Arifov S., Boboev K.

Аннотация

The frequency of genotypic variants for the rs2010963 polymorphism in the gene for vascular endothelial growth factor (VEGF) was analyzed in 140 patients with rosacea in 145 almost healthy persons of Uzbek nationality. It was shown that the distribution of genotypes in the studied groups corresponded to the Hardy–Weinberg equilibrium (p > 0.05). Significant differences in the frequency of occurrence for rs2010963 alleles of the VEGF gene were found between groups of patients with rosacea with different clinical subtypes of the disease and a group of almost healthy individuals (p < 0.05). Carrying a functionally unfavorable allele VEGF 634C in the hetero- or homozygous variant significantly increases the risk of developing rosacea. The data indicate the association of this DNA locus with the formation of rosacea in the Uzbek population.

Cytology and Genetics. 2019;53(3):233-238
pages 233-238 views

Genetic Modification of Saccharum officinarum for Herbicide Tolerance

Muhammad Fahad Khan ., Ali Q., Tariq M., Ahmed S., Qamar Z., Nasir I.

Аннотация

Sugarcane is one of the most important worldwide cultivated agro-industrial crops that belong to the family Poaeceae and genus Saccharum. Prescribed study was conducted in Seed Biotechnology Lab, Center of Excellence in Molecular Biology, University of the Punjab, Lahore-Pakistan. The purpose of this study was to alter the genome of sugarcane line CPF246 with herbicide resistance gene GTGene driven by the sugar cane ubiquitin promoter and confirmation through PCR and Dot blot as well as protein expression analysis through ELISA. Results have shown the successful transformation and expression of transgenes against glyphosate resistance. This could prove a mile stone towards putting research efforts in the improvement of Saccharum officinarum for certain traits. Outcomes of this research will be beneficial in minimizing the management cost which people do bear for weed management practices. Success of this study opens new horizons to further improve other characteristics of sugarcane using genetic modification as was done in current study.

Cytology and Genetics. 2019;53(3):239-249
pages 239-249 views

Isolation of Antimicrobials from Native Plants of Taif Governorate

El-Shehawi A., Ahmed M., Elseehy M., Hassan M.

Аннотация

Plant defensins are subgroup of plant antimicrobial peptides that have high potentials in developing safe natural agricultural and pharmaceutical biocontrol products as alternatives for the current chemical pesticides, insecticides, and antibiotics. In this study, the level of defensin gene expression was evaluated in floral buds of 9 native plants from Saudi Arabia environment using reverse transcription and polymerase chain reaction (RT-PCR). As defensins are highly expressed at the mRNA level in Ochradenus baccatus (Ob), it was used for the isolation of defensin peptides using ion exchange chromatography followed by gel filtration using Sephadex G50. SDS-PAGE of ion exchange purified proteins detected several bands in a range of 2–10 kD. These proteins were separated by gel filtration using Sephadex G50. The resultant peptide of 5 kD showed an antimicrobial activity. The peptide inhibited Gram positive and Gram negative bacteria with IC50 ranged from 10 to 25 μg/mL. It also inhibited 25 to 60% of fungal linear growth at concentrations of 12.5 and 25 μg/mL. The present results demonstrate that, we could separate and purify a 5 kD peptide from Ob. This peptide could be utilized to develop natural antimicrobial products.

Cytology and Genetics. 2019;53(3):250-260
pages 250-260 views

Development of Novel Low-Copy Nuclear Gene Primers by Transcriptomes in an Endemic Genus Orinus Hitchc. (Poaceae) from the Qinghai-Tibet Plateau

Yuping Liu ., Su X., Lv T., Chen K.

Аннотация

In the present study, a total of eleven low-copy nuclear gene markers were developed using transcriptomes for the plant genus Orinus Hitchc. (Poaceae), which comprises three species of grasses widely distributed in the Qinghai-Tibet Plateau. These developed markers were successfully amplified and sequenced for 90 individuals from nine populations of three Orinus species. The DNA sequences for the eleven loci ranged from 606 to 1152 aligned based pairs. Compared with four candidate DNA barcoding markers in our previous studies, the newly developed markers had a relatively higher number of parsimony informative sites than three cpDNA spacers (7–20 vs. 1–8), but slightly lower than those of the internal transcribed spacers (ITS). Hence, these novel low-copy nuclear gene primer pairs were validly useful for the study of phylogeography, phylogenetic analysis and population genetics. Moreover, they could be used in phylogeny reconstruction and speciation for a broad range of Orinus and even the entire subtribe Tridentinae.

Cytology and Genetics. 2019;53(3):261-265
pages 261-265 views

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