Enviar artigo por via de e-mail Fecal Microbiota of Transbaikal Camels (Camelus bactrianus) under Different Systems of Grazing Management
- Autores: Lavrentyeva E.1,2, Banzaraktsaeva T.1, Tsyrenova D.1, Dambaev V.1, Begmatov S.3, Mardanov A.3, Barkhutova D.1
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Afiliações:
- Institute of General and Experimental Biology, Siberian Branch, Russian Academy of Sciences
- Buryat State University named after D. Banzarov
- Research Center of Biotechnology, Russian Academy of Sciences
- Edição: Volume 93, Nº 2 (2024)
- Páginas: 217-222
- Seção: КРАТКИЕ СООБЩЕНИЯ
- URL: https://journals.rcsi.science/0026-3656/article/view/262570
- DOI: https://doi.org/10.31857/S0026365624020224
- ID: 262570
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Resumo
Microbial diversity in the fecal samples of Bactrian camels in Transbaikalia under various grazing management (free grazing (group I), mixed (group II) and stall housing (group III)) was revealed using high-throughput sequencing of the 16S rRNA gene variable regions. The microbial community of the fecal microbiota was found to be diverse and to depend on the camel grazing management. The most common phyla of the camel fecal microbiota were Bacillota and Bacteroidota. The phylum Verrucomicrobiota was a codominant in the fecal microbiota of groups I and II of animals, and Actinomycetota, in the feces of camels of group III. Changes in the fecal microbiota structure and taxonomic diversity occurred as camel grazing management and feeding conditions changed. Free grazing resulted in high diversity of the prokaryotic community in the fecal microbiota. In addition, differences in taxonomic composition depending on sex were found, which were in the abundance of taxa rather than in their presence or absence. The results contribute to the current understanding of the fecal microbiota of camels under different management conditions and provide evidence of the influence of nutrition on the fecal microbiota under different management conditions. Our results may be useful for addressing the issues of reproduction and conservation of the Transbaikal camel (Camelus bactrianus).
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Sobre autores
E. Lavrentyeva
Institute of General and Experimental Biology, Siberian Branch, Russian Academy of Sciences; Buryat State University named after D. Banzarov
Autor responsável pela correspondência
Email: lena_l@mail.ru
Rússia, Ulan-Ude, 660047; Ulan-Ude, 670000
T. Banzaraktsaeva
Institute of General and Experimental Biology, Siberian Branch, Russian Academy of Sciences
Email: lena_l@mail.ru
Rússia, Ulan-Ude, 660047
D. Tsyrenova
Institute of General and Experimental Biology, Siberian Branch, Russian Academy of Sciences
Email: lena_l@mail.ru
Rússia, Ulan-Ude, 660047
V. Dambaev
Institute of General and Experimental Biology, Siberian Branch, Russian Academy of Sciences
Email: lena_l@mail.ru
Rússia, Ulan-Ude, 660047
Sh. Begmatov
Research Center of Biotechnology, Russian Academy of Sciences
Email: lena_l@mail.ru
Rússia, Moscow, 119071
A. Mardanov
Research Center of Biotechnology, Russian Academy of Sciences
Email: lena_l@mail.ru
Rússia, Moscow, 119071
D. Barkhutova
Institute of General and Experimental Biology, Siberian Branch, Russian Academy of Sciences
Email: lena_l@mail.ru
Rússia, Ulan-Ude, 660047
Bibliografia
- Aricha H., Simujide H., Wang C., Zhang J., Lv W., Jimisi X., Liu B., Chen H., Zhang C., He L., Cui Y., Gao R., Aorigele C. Comparative analysis of fecal microbiota of grazing mongolian cattle from different regions in Inner Mongolia, China // Animals (Basel). 2021. V. 11. Art. 1938.
- Bhatt V.D., Dande S.S., Patil N.V., Joshi C.G. Molecular analysis of the bacterial microbiome in the forestomach fluid from the dromedary camel (Camelus dromedarius) // Mol. Biol. Rep. 2013. V. 40. P. 3363–3371.
- Edgar R.C. Search and clustering orders of magnitude faster than BLAST // Bioinformatics. 2010. V. 26. P. 2460–2461.
- Frey B., Rime T., Phillips M., Stierli B., Hajdas I., Widmer F., Hartmann M. Microbial diversity in European alpine permafrost and active layers // FEMS Microbiol. Ecol. 2016. V. 92. Art. fiw018.
- Gharechahi J., Sarikhan S., Han J.L., Ding X. Zh., Salekdeh G.H. Functional and phylogenetic analyses of camel rumen microbiota associated with different lignocellulosic substrates // NPJ Biofilms Microbiomes. 2022. V. 8. Art. 46.
- Gharechahi J., Zahiri H.S., Noghabi K.A., Salekdeh G.H. In-depth diversity analysis of the bacterial community resident in the camel rumen // Syst. Appl. Microbiol. 2015. V. 38. P. 67–76.
- Holechek J.L., Vavra M., Pieper R.D. Botanical composition determination of range herbivore diets: a review // J. Range Manage. 1982. V. 35. P. 309–315.
- He J., Yi L., Hai L. Ming L., Gao W., Ji R. Characterizing the bacterial microbiota in different gastrointestinal tract segments of the Bactrian camel // Sci. Rep. 2018. V. 8. Art. 654.
- He J., Hai L., Orgoldol K., Yi L., Ming L., Guo F., Li G., Ji R. High-throughput sequencing reveals the gut microbiome of the Bactrian camel in different ages // Curr. Microbiol. 2019. V. 76. P. 810–817.
- Henderson G., Cox F., Ganesh S., Jonker A., Young W. Global Rumen Census Collaborators & Janssen, P.H. Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range // Sci. Rep. 2015. V. 5. Art. 14567.
- Huo W., Zhu W., Mao S. Impact of subacute ruminal acidosis on the diversity of liquid and 446 solid-associated bacteria in the rumen of goats // World J. Microbiol. Biotechnol. 2014. V. 30. P. 669–680.
- Rabee A.E., Forster R., Elekwachi C., Sabra E., Lamara M. Comparative analysis of the metabolically active microbial communities in the rumen of dromedary camels under different feeding systems using total rRNA sequencing // Peer J. 2020. V. 8. Art. e10184.
- Rognes T., Flouri T., Nichols B., Quince C., Mahé F. VSEARCH: a versatile open source tool for metagenomics // Peer J. 2016. V. 4. Art. e2584.
- Karnachuk O.V., Panova I.A., Panov V.L., Ikkert O.P., Kadnikov V.V., Rusanov I.I., Avakyan M.R., Glukhova L.B., Lukina A.P., Rakitin A.V., Begmatov S, Beletsky A.V., Pimenov N.V., Ravin N.V. Active sulfate-reducing bacterial community in the camel gut // Microorganisms. 2023. V. 11. Art. 401.
- Liu Y., Zhang G., Yang J., Cheng Y., Ye L., Lai X.H., Yang C., Ma C., Tao Y., Jin D., Lu S., Liu L., Xu J. Arthrobacter caoxuetaonis sp. nov., Arthrobacter zhangbolii sp. nov. and Arthrobacter gengyunqii sp. nov., isolated from Marmota himalayana faeces from Qinghai-Tibet Plateau // Int. J. Syst. Evol. Microbiol. 2023. V. 73. https://doi.org/10.1099/ijsem.0.005742
- Magoc T., Salzberg S. FLASH: Fast length adjustment of short reads to improve genome assemblies // Bioinformatics. 2011. V. 27. P. 2957–2963.
- Ming L., Yi L., Siriguleng., Hasi S., He J., Hai L., Wang Z., Guo F., Qiao X., Jirimutu. Comparative analysis of fecal microbial communities in cattle and Bactrian camels // PLoS One. 2017. V. 12. Art. e0173062.
- Mohandesan E., Fitak R.R., Corander J., Yadamsuren A., Chuluunbat B., Abdelhadi O., Raziq A., Nagy P., Stalder G., Walzer C. Mitogenome sequencing in the genus Camelus reveals evidence for purifying selection and long-term divergence between wild and domestic Bactrian camels // Sci. Rep. 2017. V. 7. Art. 9970.
- Samsudin A.A., Evans P.N., Wright A.D., Aj Jassim R. Molecular diversity of the foregut bacteria community in the dromedary camel (Camelus dromedarius) // Environ. Microbiol. 2011. V. 13. P. 3024–3035.
- Zhang G., Yang J., Jin D., Lai X.H., Lu S., Ren Z., Qin T., Liu L., Pu J., Liu Y., Ye L., Zhou J., Lv X., Tao Y., Xu J. Arthrobacter sunyaminii sp. nov. and Arthrobacter jiangjiafuii sp. nov., new members in the genus Arthrobacter // Int. J. Syst. Evol. Microbiol. 2022. V. 72.
- https://doi.org/10.1099/ijsem.0.005181
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