Vol 60, No 8 (2019)
- Year: 2019
- Articles: 16
- URL: https://journals.rcsi.science/0022-4766/issue/view/9828
Article
Crystallographic Analysis of Symmetry-Stability Relations in Atomic Structures
Abstract
Widely known and some other structural types as well as mechanisms of structural transformations are considered in the framework of the idea that stability of crystal structures is caused by translational and point spatial symmetries, which reduce the degree of freedom and, therefore, the energy of material particles (atoms, chemically stable atomic groups). The role of highly symmetric spatial “stencils” of atomic arrangement in the solution of the composition—structure problem is shown. Criteria of relative stability of crystal structures are proposed.
Electronic Structure and Magnetic Properties of o-Benzoquinone Iron Complexes with Tetraazamacrocyclic Ligands
Abstract
Structure, energy characteristics, and magnetic properties of o-benzoquinone iron complexes with tetradentate macrocyclic nitrogen containing bases (pyridinophane and tris(2-pyridylmethyl)amine) are studied with a DFT (UTPSSh/6-311++G(d,p)) quantum chemical method. Electron withdrawing substituents in the redox-active ligand stabilize its dianionic form but do not significantly affect the energy difference between the electromers. Strong ferromagnetic exchange interactions are predicted in the isomers of complexes containing a high-spin divalent iron ion and the semiquinone form of o-benzoquinone. According to the calculations, all studied compounds can undergo thermally induced spin crossover transitions.
Quantum Chemical Modeling of Electrochemical Consecutive Reduction of Fe(III) Aqua- and Aqua-Hydroxocomplexes
Abstract
Quantum chemical modeling of Fe(III), Fe(II), and Fe(I) aqua-, aqua-hydroxo-, and aquadihydroxocomplexes is presented. The mechanism of a consecutive transfer of two electrons is studied as these forms are electrochemically reduced from an aqueous solution. The reorganization energy of the solvent and the inner sphere of studied reagents is calculated, standard redox potentials are estimated. Based on Marcus theory, the activation energy of two steps of Fe(III) reduction is estimated and the second electron transfer is shown to be rate controlling, while the energy barrier is increased due to the products of Fe(III) hydrolysis. The model predictions are in qualitative agreement with previously reported experimental data.
Molecular Dynamics Study of the Deposition of Palladium-Silver Films on a Silver Substrate
Abstract
The formation of PdxAg1-x thin films from the gas phase on silver substrates is modeled by molecular dynamics. The effect of substrate temperature on the structure of coatings of various compositions (x = 0, 0.25, 0.5, 0.75, 1) is studied in the range from 300 K to 900 K. The films are shown to have an unevenly deformed fcc structure over the entire range of considered temperatures and compositions. The surface of the coating is not smooth; it contains holes and cavities with a characteristic height difference of several angstroms. No misfit dislocations are formed in the studied systems. Higher substrate temperatures during the deposition of the coating lead to the increased average adsorption energy in the formed layer (which is true for all elemental compositions of the films.) This is caused by the fact that diffusion rate is higher on hotter substrates, and the surface of the coating is therefore smoothed. It is notable that the change of adsorption energy as a function of the substrate temperature during film deposition is directly proportional to the palladium content in the film. A high accuracy (above 0.01 eV) procedure is proposed for the calculation of cohesive energy in the film. This characteristic is shown to be virtually independent on the substrate temperature during nanolayer deposition. This is a direct indication that the structure of the coating volume is not changed, regardless of its elemental composition, as the temperature of formation increases.
Synthesis, Experimental and Theoretical Studies on N,N′-Dipyridoxyl(4-Chloro-1,2-Phenylenediamine) Tetradentate Ligand and Its Copper(II) Complex
Abstract
In this work, N,N′-dipyridoxyl(4-chloro-1,2-phenylenediamine) [=H2L] Schiff base and its Cu(II) complex [Cu(L)] are newly synthesized and characterized by IR, NMR, and mass spectroscopies as well as the elemental analysis. In addition to experimental characterizations, their structural parameters, tautomerism of the H2L, assignment of their IR vibrational bands and NMR chemical shifts together with the natural bond orbital (NBO) analysis are calculated at the density functional theory (DFT) level. The geometry of free H2L Schiff base is not planar, but each of the three aromatic rings lies in a separate plane. However, the [Cu(L)] complex has a square-planar geometry. The dianionic L2− species acts as a tetradentate ligand in the N,N,O-,O- manner. In the structure of the square complex, two phenolic oxygen atoms and two azomethine nitrogen atoms occupy four coordination positions. High-energy gaps approve the stability of two investigated compounds. The DFT-computed values are in good agreement with the experimental ones, confirming the suitability of the optimized geometries for H2L Schiff base and its [Cu(L)] complex.
Cu(II) Complex of a Schiff Base Derived from Pyridoxal: Synthesis, Experimental Characterization, DFT Studies, and Aim Analysis
Abstract
A Cu(II) complex of the N,N′-dipyridoxyl(1,2-diaminobenzene) [=H2L] Schiff base is newly synthesized. The complex is characterized experimentally and theoretically. The density functional theory methods are employed to calculate the optimized geometry along with the natural bond orbital analysis and the vibrational frequency analysis of the complex. The computed IR frequencies are in agreement with the experimental one, confirming the validity of the proposed geometry for the complex. In the optimized geometry of the octahedral complex, dianionic L2– acts as a tetradentate ligand. Two azomethine nitrogen atoms and two phenolate oxygen atoms of the L2– ligand occupy four square positions of the complex. Also, two methanol ligands are perpendicular to the square plane. The large energy gap between the frontier orbitals demonstrates the stability of the complex. The properties of the Cu–N and Cu–O bonds are investigated by the Atoms In Molecules analysis, too.
Spectroscopic (FT-IR, NMR) and Computational Investigation of 2-(2-Aminoethyl)-1,2,3,4,9-Tetrahydrocarbazole: NBO, NLO, FMO, MEP Analysis
Abstract
The FT-IR, 1H and 13C NMR spectroscopic characterization of the title molecule is assessed by quantum chemical simulations in detail and compared with the observed values. First, the possible structures of the substituted carbazole compound are determined by the PES scan in the gas phase at the B3LYP/6-31G(d,p) level. Then, all conformers of the title compound are re-optimized with 6-31G(d,p) and 6-311++G(d,p) basis sets at the B3LYP level in both gas phase and water, and used for the further simulations, including NBO, NLO, FMO, and MEP analyses. The polarized continuum model is used to conduct all calculations simulated in water. This work reveals that the biggest contribution to a decrease in the molecular stabilization energy comes from n → π* and π → π* interactions for all conformers. In addition, the NLO properties imply that this compound can be a suitable candidate for the use in optoelectronic devices.
Elaboration, Vibrational Study and Thermal Behavior of Lacunar Apatites NaPb3−xCdxCa(PO4)3 (0 ≤ x ≤ 1)
Abstract
In this work we are interested in the synthesis of a new solid solution type NaPb3–xCdxCa(PO4)3; (0 ≤ x ≤ 1). The lacunar apatite series are synthesized by a solid-state reaction and studied by X-ray diffraction, infrared and Raman scattering spectroscopy, thermal gravimetric analysis, and differential scanning calorimetry. The crystal structure of these compounds was refined using the Rietveld method. These compounds crystallize in the hexagonal system (space group P63/m) with a number of units per crystal lattice Z = 2. The structure is formed by [PO4]3− tetrahedra and Pb2+/Ca2+/Cd2+ ions, which constitute the basic skeleton of the structure. The Pb2+/Ca2+/Cd2+ ions occupy the 6h sites, whereas the 4f sites are occupied in half by the Pb2+/Ca2+/Cd2+ ions and the other half by the Na+ ions. The observed frequencies in the Raman and infrared spectra are explained and discussed based on the factor group analysis and by comparison with similar apatites. The vibrational spectroscopy results are in good agreement with the X-ray diffraction measurements. The internal modes of (PO4)3− tetrahedra are assigned and corroborate well with the factor group analysis for the symmetry P63/m. We also investigated the thermal stability of these apatite materials by differential scanning calorimetry.
Synthesis, X-Ray Crystal Structure, and Catalytic Epoxidation Property of an Oxovanadium(V) Complex with Hydrazone and Ethyl Maltol Ligands
Abstract
A new oxovanadium(V) complex [VO(BH)(EM)], where BH = N′-(2-hydroxybenzylidene)-4-trifluoromethylbenzohydrazide, EM = ethyl maltol, is synthesized and fully characterized based on the elemental analysis, FT-IR, UV-Vis, and 1H NMR spectra. The complex is also characterized by single crystal X-ray diffraction, which indicates that the V atom adopts the octahedral coordination. The hydrazone ligand behaves as a tridentate ligand, and the ethyl maltol ligand behaves as a bidentate ligand. The catalytic epoxidation property of the complex is investigated.
A Heterotetranuclear Zinc(II)-Cerium(IV) Salamo Complex Possessing Deca- and Dodeca-Coordinated Cerium(IV) Atoms: Synthesis, Structure, and Photophysical Properties
Abstract
A heterotetranuclear zinc(II)-cerium(IV) complex [(ZnL)2Ce(OAc)2][Ce(NO3)6] · Py (H2L = 6,6′-methoxy-2,2′-[1,2-ethylenedioxybis(nitrilomethylidyne)]diphenol and Py = pyridine) is successfully prepared by a one-pot reaction of a Salamo-type ligand H2L with Zn(OAc)2·2H2O, Ce(NO3)3-6H2O, and an auxiliary ligand Py. The Znn-CeIV complex consists of one dicationic [(ZnL)2Ce(OAc)2]2+ unit with a deca-coordinated CeIV atom, one [Ce(NO3)6]2− dianionic unit with a dodeca-coordinated CeIV atom, and one uncoordinated Py molecule. Interestingly, the two CeIV atoms are positive tetravalent, which may probably be due to the oxidation of trivalent Cem atoms during the reaction. Moreover, the photophysical properties of the Znn-CeIV complex are studied.
Synthesis, Structure, Magnetic and Photoluminescent Properties of Lanthanide(III) Complexes with a Ligand Based on 1,10-Phenanthroline and (+)−3-Carene
Abstract
Ionic complexes of the composition [LnL2(NO3)2]2[Ln(NO3)5]3Me2CO (Ln = Sm (1), Eu (2), Tb (3), Dy (4)) with an optically active ligand L containing 1,10-phenanthroline and (+)−3-carene moieties are synthesized. According to the X-ray crystallographic data, the crystal structure of compound 2 is composed of complex [EuL2(NO3)2]+ cations (N6O4 polyhedron) and complex [Eu(NO3)5]2− anions (O10 polyhedron), and also Me2CO molecules. The L and NO3 ligands perform both tridentate and bidentate chelating functions respectively. Complexes 1–4 are isostructural and crystallize in the non-centrosymmetric space group P1; their magnetic properties are studied in the temperature range 2–300 K. The μeff values for 1–4 at 300 K are 3.14 μB, 6.08 μB, 16.76 μB, and 18.30 μB respectively and are typical of Ln3+ ions. For complex 3 significant anisotropy results in a nonlinear field dependence of the magnetization at 2 K. Complexes 1–4 exhibit metal-centered orange (Sm3+), red (Eu3+), green (Tb3+), and yellow (Dy3+) luminescence in the solid state at room temperature. Luminescence quantum yield decreases for solid samples in the order 2 > 1 > 3 ≈ 4.
Structure and Properties of (C4N2H12)[Pt(NO3)6] Salt
Abstract
From a nitrate solution of platinum(IV) hydroxide, (C4N2H12)[Pt(N03)6] salt containing a piperazinium cation is isolated. The salt structure is determined by X-ray crystallography. Crystallographic data are: a=15.589(1)Å, b= 12.919(1) Å, c = 9.889(9)Å, β = 08.625(4)°, space group C2/c, Z=4, ρcalc= 2.306 g/cm3. In the structure, [Pt(NO3)6]2− anions having a shape of a trigonal antiprism are organized into a 3D network by the formation of hydrogen bonds with organic cations. For a series of salts containing [Pt(NO3)6]2− and [Pt2(ώ-OH)2(NO3)8]2− anionic platinum nitrato complexes a relationship between the structure and 195Pt MAS NMR spectra is shown.
Digitogenin-Gitogenin Isomorphous Substitution in the Mixed Crystal from Digitalis Lanata EHRH
Abstract
A crystalline compound is isolated from Digitalis lanata Ehrh. and its molecular and crystal structures are studied by single crystal X-ray diffraction. The X-ray diffraction results show that the crystal is mixed and consists of a crystalline hydrate of isomorphically substituted digitogenin and gitogenin molecules in the 38:62 ratio. The data on the mole ratio are confirmed by high-performance liquid chromatography.
Synthesis, Crystal Structure, and DFT Study of 4-(3,5-Dimethylisoxazol-4-yl)Benzene-1,2-Diol
Abstract
The isoxazole derivative 4-(3,5-dimethylisoxazol-4-yl)benzene-1,2-diol is synthesized and characterized by spectroscopy. The structure is further determined by single crystal X-ray diffraction. We also use the B3LYP method to calculate the optimized structure of the molecule by DFT using the 6-311+G(2d,p) basis set. A comparison of the obtained structures is made. The results show that the crystal structures determined by single crystal X-ray diffraction and the DFT calculation are very close.
Molecular Dynamics Simulation of the Aging Process of the Cysteine-Silver Solution
Abstract
A cysteine-silver solution (CSS) is a low-concentrated supramolecular system capable of gelation as a result of addition of initiating salts. The initial stage of CSS aging is studied in this work by a large-scale all-atom molecular dynamics simulation. From the calculations a possible structure of suprananomers based on silver mercaptide is determined along with their properties allowing them to form a gel network. The results obtained are consistent with the IR spectroscopic data and measurements of the ζ-potential.
Features of the Mocvd Formation of MgO−RuO2 Electron-Emitting Film Structures
Abstract
Thin-film structures based on magnesium and ruthenium oxides are obtained by metal-organic chemical vapor deposition (MOCVD) on flat silicon substrates from volatile bis-(dipivaloylmethanato)(N, N, N’,N’-tetramethylethylenediamine)magnesium(II) and tris-(acetylacetonato)ruthenium(III) complexes in the presence of oxygen. The samples are studied by SEM, EDS, powder XRD, and differential dissolution; their emission characteristics are also measured. The features of the phase formation and the microstructure in the films formed are shown and different forms of magnesium and ruthenium oxides, including nonstoichiometric ones, are found. The MOCVD experimental parameters to form composite structures with high coefficients of electron-induced secondary electron emission (up to 7.2) are determined. These materials can be used as efficient emitting coatings in modern 3D electron multipliers.