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Том 60, № 7 (2019)

Article

Electronic Structure of CO2 and CS2 Crystals

Basalaev Y., Marinova S.

Аннотация

Density functional theory methods are used to study diamond-like crystals CO2 and CS2 with defect chalcopyrite structure (β-SiO2). Equilibrium crystal lattice parameters are determined, energy band spectra are calculated for these crystals and for their cation (C) and anion (O, S) sublattices. The formation of chemical bonding in the crystals is studied by analysing total and partial densities of states and distribution maps of differential and deformation charge densities of valence electrons.

Journal of Structural Chemistry. 2019;60(7):1019-1026
pages 1019-1026 views

Estimating Physicochemical Properties of Simplest Homologue Using Recurrent Relations

Zenkevich I.

Аннотация

It is shown on the examples of normal boiling points (Tb) and relative densities of organic compounds from several homologous series that the values of physicochemical properties (A) of simplest homologues can be estimated from those of the adjacent homologues whose molecules differ by one carbon atom. This can be achieved by using simplest recurrent relations A(n) = aA(n ± 1) + b (n is the number of carbon atoms in the molecule; a, b are the coefficients calculated by the least squares method) which are applicable for all sets of various series with the same homologous differences (CN2 or CF2). It is shown that the estimations based on the data obtained from “zero” or first homologues containing only hydrogen atoms or methyl groups in their molecules are 3-4 times less exact than those obtained for the homologues with larger numbers of carbon atoms in the molecule. This is explained by objective anomalies common to the properties of simplest homologues of all series and caused, among other reasons, by structural factors. A method is proposed to offset the anomalies in Tb values of the first members of the series using additive corrections.

Journal of Structural Chemistry. 2019;60(7):1027-1036
pages 1027-1036 views

Using IR Spectroscopy to Study Structures of Benzylamine Phenol-Formaldehyde Oligomers

Amiraslanova M., Alieva A., Akhmedbekova S., Ibragimova M., Mamedzade F., Rustamov R., Alieva S., Dadasheva N., Isaeva P.

Аннотация

The structures of phenol-formaldehyde oligomers functionalized by benzylamine were studied. The mechanisms of the synthesis and transformations of initial oligomers with various molar ratios of the nitrogen-containing modifier were discussed. The optical densities of the main bonds were obtained by the IR spectroscopy method, the regularities of their changes were reported and substantiated.

Journal of Structural Chemistry. 2019;60(7):1037-1042
pages 1037-1042 views

XPS Study of the Process of HgCdTe Oxidation in a Glow Discharge Oxygen Plasma

Zakirov E., Kesler V.

Аннотация

Initial stages of HgCdTe oxidation in a glow discharge plasma in O2 atmosphere are first studied using the XPS method. The chemical composition of the growing native oxide layer is investigated and the oxidation kinetics is revealed. It is experimentally established that the mechanism of HgCdTe oxidation changes as the oxide thickness reaches 2-3 nm due to the change of the limiting stage of the chemical reaction. The composition of the formed oxide is varies with depth and is characterized by low mercury content. It is suggested that the diffusion of oxygen to the oxide–semiconductor interface and its predominant interaction with tellurium are the main mechanism of the native MCT oxide growth, so that the oxide region bordering the substrate is ∼10% oxygen depleted. The obtained results are discussed and compared with previously reported data on MCT oxidation in RF plasma and in liquid electrolytes.

Journal of Structural Chemistry. 2019;60(7):1043-1051
pages 1043-1051 views

Crystal Structures and Characteristics of Hirshfeld Surfaces of Co(II) β-Iminoketonate Derivatives

Dorovskikh S., Piryazev D., Stabnikov P., Morozova N.

Аннотация

A series of Co β-iminoketonate derivatives with the general formula Co(L1)2, (L1 = i-acac (R = H, R1 = R2 = Me) – (1), Mei-acac (R = R1 = R2 = Me) – (2), i-thd (R = H, R1 = R2 = tBu) – (3), Mei-thd (R = Me, R1 = R2 = tBu) – (4)) and Co(L2) (L2= dmpda(acac)2 – (5) are obtained by the reaction of CoCl2 with the sodium salt of the corresponding β-iminoketonate ligand (L1 = R1C(O)CHC(NR)CR2 or L2 = MeC(O)CHC(Me)(NCH2C(Me)2CH2N)C(Me)CHC(O)Me) in methanol. Complexes 1-5 are characterized by the methods of elemental analysis, X-ray diffraction, and IR spectroscopy. The crystal cell parameters at 293 K are as follows: space group Сс, a = 13.7304(9) Å, b = 5.5516(4) Å, с = 18.4034(12) Å, β = 101.964(2)°, V = 1372.34(16) Å3, Z = 4 (2); space group P21/n, a = 9.953(2) Å, b = 12.074(3) Å, с = 11.161(2) Å, β = 109.924(8)°, V = 1260.9(5) Å3, Z = 2 (3); space group P1̅, a = 11.7982(7) Å, b = 13.1673(9) Å, с = 17.6159(10) Å, α = 71.493(2)°, β = 83.478(2)°, γ = 72.829(2)°, V = 2478.7(3) Å3, Z = 4 (4); space group Pbca, a = 7.8635(2) Å, b = 14.0521(4) Å, с = 29.8715(9) Å, V = 3300.76(16) Å3, Z = 8 (5). Two pairs of shortened contacts are revealed in molecules 2 and 5 when studying their Hirshfeld surfaces. It is shown with the thermogravimetry method that complexes 1 and 2 are the most volatile in the studied series.

Journal of Structural Chemistry. 2019;60(7):1052-1061
pages 1052-1061 views

Isostructurality and Thermal Properties in the Series of Double Complex Salts [M1(NH3)6][M2(C2O4)3]·3H2O (M1 = Co, Ir, M2 = Fe, Cr)

Yusenko K., Pechenyuk S., Vikulova E., Semushina Y., Baidina I., Filatov E.

Аннотация

A series of four isostructural double complex salts are prepared on the basis of [M1(NH3)6]3+ cations and [M2(C2O4)3]3– anions, where M1 = Co, Ir, M2 = Fe, Cr. The salts are crystallized in a hexagonal space group Pc1. According to thermal analysis data, thermal stability in an atmosphere of argon (starting temperature of the decomposition of dehydrated products) of studied compounds depends on the nature of the complex tris-oxalate anion and increases in the series [M1(NH3)6][Co(C2O4)3] < [M1(NH3)6][Fe(C2O4)3] < [M1(NH3)6][Cr(C2O4)3] < [M1(NH3)6][Ir(C2O4)3] (M1 = Co, Ir). Hexammineiridium(III) salts are more stable than cobalt(III) salts with the same anion. Thermal decomposition of [Co(NH3)6][Fe(C2O4)3]·3H2O and [Ir(NH3)6][Fe(C2O4)3]·3H2O salts in an atmosphere of hydrogen leads to the formation of solid solutions Co0.5Fe0.5 and Ir0.5Fe0.5, respectively.

Journal of Structural Chemistry. 2019;60(7):1062-1071
pages 1062-1071 views

Polynuclear Sulfide-Bridging Rh(III) Complexes with P(CH2OH)3

Anyushin A., Kompan’kov N., Abramov P., Sokolov M.

Аннотация

A reaction of RhCl3·3H2O with P(CH2OH)3 (THP) and H2S in methanol results in the formation of a new trinuclear complex [Rh3(μ3-S)22-S)(μ2-Cl)2(THP)6]Cl (1) with a yield of 29%. The structure of 1 is determined by X-ray crystallography. With the same initial compounds with hexamethyldisilthiane as a sulfide source a binuclear [Rh22-S2)(μ2-S)(THP)6]2+ complex is obtained in which mono- and disulfide bridges are present simultaneously. The latter is isolated and structurally characterized as [Rh2(μ-S2)(μ2-S)(THP)6][Mo6Cl14]·0.6MeOH (2) with a yield of 12%. The compounds obtained are characterized by mass spectrometry and 31P NMR spectra.

Journal of Structural Chemistry. 2019;60(7):1072-1079
pages 1072-1079 views

Synthesis, Structure, and Spectral Studies of the (Et4N)4[Nb2O2(C2O4)4(µ-C2O4)] Complex

Shmakova A., Abramov P., Sokolov M.

Аннотация

The bis(oxalate) complex of niobium (NH4)[NbO(C2O4)2(H2O)2]·3H2O can be dissolved in DMF on heating. Ether diffusion into this solution in the presence of Et4NBr leads to the formation of colorless crystals of (Et4N)4[Nb2O2(C2O4)4(μ-C2O4)] (1). The characterization of the obtained compound by single crystal and powder XRD, IR and Raman spectroscopy, and elemental analysis allows to clarify processes occurring with the bis(oxalate) niobium complex in aqueous solutions.

Journal of Structural Chemistry. 2019;60(7):1080-1085
pages 1080-1085 views

Crystal Structure of Na2[OsCl6]

Rudnitskaya O., Kultyshkina E., Dobrokhotova E., Tereshina T., Popova A., Zubavichus Y., Khrustalev V.

Аннотация

Salt Na2[OsCl6] is obtained by the interaction of H2[OsCl6]·H2O with NaCl in boiling concentrated hydrochloric acid. According to the single crystal X-ray diffraction data, the substance crystallizes in the cubic system, space group Fmm, a = 9.7461(11) Å, V= 925.8(3) Å3, Z = 4, R1= 0.029, wR2 = 0.070. The compound is characterized by UV-vis and IR spectroscopy.

Journal of Structural Chemistry. 2019;60(7):1086-1090
pages 1086-1090 views

Structure and Magnetic Properties of Lanthanide Compounds with the 3,6-Di(Tert-Butyl)-1,2-Benzoquinone Radical Anion

Romanenko G., Fokin S., Letyagin G., Bogomyakov A., Ovcharenko V.

Аннотация

Molecular and crystal structures of mononuclear lanthanide (Ln) compounds with the 3,6-di(tert-butyl)-1,2-benzoquinone (SQ) radical anion of the composition [Ln(SQ)3(THF)2] (Ln = Pr, Nd, Eu, Tb, Dy), [Ln(SQ)3(Q)], (Ln = Gd, Eu; Q – 3,6-di(tert-butyl)-1,2-benzoquinone), [La(SQ)3(Q)(THF)], [CeIV(SQ)4], [NaLn(SQ)4(THF)3]·0.25C6H14 (Ln = Gd, Tb), [NaLn(SQ)4(Q)(THF)] (Ln = La, Pr) are determined. The study of the magnetic properties of isolated heterospin solid phases reveals that intramolecular antiferromagnetic exchange interactions between unpaired electrons of SQ moieties dominate in them. At T≤2 K [Dy(SQ)3(THF)2] exhibits the properties typical of a metamagnetic compound.

Journal of Structural Chemistry. 2019;60(7):1091-1100
pages 1091-1100 views

Synthesis and Crystal Structures of Oxidovanadium(V) Complexes Derived from Hydrazones with the Catalytic Property

Zou D., Sun N., Chen W.

Аннотация

Two new structurally similar oxidovanadium(V) complexes [VOL1L] (1) and [VOL2L] (2) (L = acetohydroxamate) derived from N′-(5-bromo-2-hydroxybenzylidene)-2-methylbenzohydrazide (H2L1) and N′-(2-hydroxy-4-methoxybenzylidene)-3-methylbenzohydrazide (H2L2) hydrazones are prepared and characterized by elemental analyses, FT-IR, 1H NMR, and single crystal X-ray diffraction (CIF files CCDC Nos. 1859442 (1) and 1859446 (2)). The V atoms in the complexes are in the octahedral coordination, with hydrazones behaving as binegative donors and acetohydroxamate acting as a mononegative ligand. The complexes function as effective olefin epoxidation catalysts.

Journal of Structural Chemistry. 2019;60(7):1101-1109
pages 1101-1109 views

Crystal Structure of Cationic η3-Methallylpalladium Complexes Bearing Aliphatic Iminopyridine Ligands

Dridi S., Mechria A., Msaddek M.

Аннотация

Three aliphatic ligands are synthesized and fully characterized by IR, 1H and 13C NMR spectroscopy. These ligands react with a zerovalent compound Pd(dba)2 in the presence of methallyloxytris(dimethylamino) phosphonium hexafluorophosphate salt [C4H7OP(NMe2)3]+\({\rm{PF}}_6^-\) as an allylating agent for the synthesis of cationic η3-methallylpalladium complexes to give three cationic mononuclear η33-methallylpalladium complexes in high yields. These formed complexes are characterized by IR, 1H NMR and 13C NMR spectroscopy. One of them is characterized by X-ray diffraction. A DFT-optimized structure is also discussed.

Journal of Structural Chemistry. 2019;60(7):1110-1118
pages 1110-1118 views

Synthesis, Crystal Structure, and Photoluminescence of a Lithium Perchlorate Complex with 18-Crown-6

Jian Y., Fu B., Fu S., Liu X.

Аннотация

The reaction of lithium perchlorate salt and 18-crown-6 (18C-6) in the commercial tetrahydrofuran (THF) solvent leads to a novel important intermediate Li(18C-6)(H2O)2(ClO4)⋅0.5((18C-6)⋅THF) (1). The crystal structure shows it as a mononuclear lithium complex, and the asymmetric unit contains a Li(H2O)2(18C-6) moiety, one half of the 18C-6 guest molecule, one half of the disordered THF solvent molecule, and a perchlorate anion. Solid-state photoluminescence experiments show that complex 1 emits violet luminescence, and its possible emission mechanism is investigated in detail based on theoretical calculations.

Journal of Structural Chemistry. 2019;60(7):1119-1125
pages 1119-1125 views

Synthesis and Crystal Structure of a New Binuclear Copper(II) Carboxylate Complex as a Precursor for Copper(II) Oxide Nanoparticles

Karthik K., Qadir A.

Аннотация

A paddle-wheel copper(II) carboxylate complex of the type [Cu2(2-nb)4(EtOH)2] (1), where 2-nb = 2-nitrobenzoate, is synthesized and characterized by single crystal X-ray diffraction, IR spectroscopy, and elemental analysis. The results show that the complex has a square pyramidal geometry around the metal center. Combustion of copper(II) carboxylate gives copper(II) oxide nanoparticles which were characterized by powder XRD, SEM, EDX, and IR analyses. This study indicates that the coordination compound represents a suitable single precursor for the synthesis of CuO nanoparticles.

Journal of Structural Chemistry. 2019;60(7):1126-1132
pages 1126-1132 views

Synthesis and Electrophoretic Concentration of Hydroxyapatite Nanoparticles in Reverse Micelles of Oxyethylated Surfactant

Podlipskaya T., Bulavchenko A.

Аннотация

By photon correlation spectroscopy the formation of hydroxyapatite nanoparticles in reverse micelles of oxyethylated surfactant Tergitol NP-4 is studied depending on the solubilization capacity of a micellar solution. Stable organosols are obtained, the electrophoretic concentration and the separation of hydroxyapatite nanoparticles from the surfactant excess and synthesis by-products are performed in the presence of an anionic surfactant AOT. According to the transmission electron microscopy data, the shape of hydroxyapatite nanoparticles is elongated (length 40-80 nm, thickness 5-20 nm), which is well consistent with the n-averaged hydrodynamic diameter determined by photon correlation spectroscopy. The nanoparticles are positively charged; their ζ-potential changes from 10 mV to 42 mV, depending on the surfactant and solvent types.

Journal of Structural Chemistry. 2019;60(7):1133-1142
pages 1133-1142 views

Synthesis, Structural Commentary, Supramolecular Architecture and Molecular Docking Investigations of a Novel Thiophene-Fused 1,2,3,4-Tetrahydroisoquinoline Derivative as a Potent Anti-Cancer Agent

Murugavel S., Manikandan N., Ravikumar C., Naveen K., Perumal P.

Аннотация

The 1,2,3,4-tetrahydroisoquinoline derivative compound fused with thiophene (BDTTIQ) is synthesized by the slow evaporation solution growth method and characterized by SCXRD, 1H and 13C NMR techniques. In the synthesized compound, the tetrahydroisoquinoline fragment of BDTTIQ is almost in the half-chair conformation. A 3D supramolecular architecture is attained by intermolecular C-H...0 and C-H...71 interactions in the crystal structure. Molecular docking simulations are carried out to examine the inhibitory nature of the synthesized compound BDTTIQ against ARK1C3 protein.

Journal of Structural Chemistry. 2019;60(7):1143-1149
pages 1143-1149 views

Synthesis, Crysta Structure, and Some Propertie of 4-Hydroxymethylpyridinium Hexafluorosilicate

Gelmboldt V., Shyshkin I., Fonari M., Kravtsov V.

Аннотация

Hexafluorosilicate with the composition (LH)2SiF6 (I), (L = 4-hydroxymethylpyridine) is isolated as the interaction product of an L methanol solution and 45% hydrofluorosilicic acid (L:H2SiF6 = 1:3). It the crystal structure of I the cations and anions are linked by NH···F (N···F of 2.809(2) Å,2.824(2) Å) and OH···F (O···F of 2.7036(18) Å) H bonds; the geometry of the SiF62− anion is a distorted octahedron (Si–F distances 1.6780(11)-1.6877(11) Å). In the IR spectrum of I the absorption bands of the main vibrations are identified; the solubility of I in water and some organic solvents and the degree of hydrolysis of the salt in a 1·10−4 M aqueous solution are determined.

Journal of Structural Chemistry. 2019;60(7):1150-1155
pages 1150-1155 views

Synthesis and Structural Characterization of a Monomeric Mixed Ligand Copper(II) Complex Involving N,N,N′,N′-Tetramethylethylenediamine and Mefenamate

Batool S., Gilani S., Zainab S., Tahir M., Harrison W., Syed Q., Mazhar S.

Аннотация

A monomeric ternary complex [Cu(tmen)(mef)2] (1) (where mef = mefenamate anion (C15H15NO21−, tmen = N,N,N′,N′-tetramethylethylenediamine) is prepared by the reaction of CuCl2·2H2O, mefenamic acid (mefH = 2-(2,3-dimethylphenyl)aminobenzoic acid), and N,N,N′,N′-tetramethylethylenediamine (tmen) in the presence of sodium hydroxide. Complex 1 is characterized by the elemental combustion analysis, UV-visible and FT–IR spectroscopy, thermal analysis, and single crystal X-ray diffraction. From the crystal structure of complex 1, it is evident that each copper(II) ion is six-coordinate and is bonded to chelating tmen, and four O atoms of two mef anions (mef1–). In the crystal, the intramolecular hydrogen bonding exists between the H atom of the –NH group of mef and the O atom of one of the coordinated carboxylate O atoms, belonging to the same mef ligand. Complex 1 is tested for antibacterial properties against four strains, including Staphylococcus aureus, Bacillus spizizenii, Escherichia coli, and Klebsiella pneumonia. The complex shows a biological activity against Staphylococcus aureus and Bacillus spizizenii.

Journal of Structural Chemistry. 2019;60(7):1156-1165
pages 1156-1165 views

Two Novel Tungstate Metal-Organic Complexes: Crystal Structures and Anticancer Activity in Osteogenic Sarcoma

Wang Z., She W., Luo X., Zeng Y., Wang W.

Аннотация

Two novel metal-organic compounds based on tungstate–[Ni(HL1)2(Mo8O26)]·5H2O (1, L1 = 4-[5-(1H-pyrazol-4-yl)-4H-[1,2,4]triazol-3-yl]-pyridine) and [{Ni4(L2)4(H2O)6}(H3PMo12O40)]× 7H2O (2, L2 = 2-(3-carboxypyridin-2-yl) nicotinic acid)–are hydrothermally synthesized and characterized by single crystal X-ray diffraction as well as elemental analysis. In addition, the in vitro anticancer activity of compounds 1 and 2 on three human osteogenic sarcoma cells (MG63, U2OS, and 143B) is further determined via the MTT assay.

Journal of Structural Chemistry. 2019;60(7):1166-1172
pages 1166-1172 views

Synthesis, Crystal Structure, Anti-Bone Cancer Activity and Molecular Docking Investigations of the Heterocyclic Compound 1-((2S,3S)-2-(Benzyloxy)Pentan-3-yl) -4-(4-(4-(4-Hydroxyphenyl)Piperazin-1-yl) Phenyl)-1H-1,2,4-Triazol-5(4H)-One

Lv G., Zhang D., Wang D., Pan L., Liu Y.

Аннотация

Heterocyclic compound 1-((2S,3S)-2-(benzyloxy)pentan-3-yl)-4-(4-(4-(4-hydroxyphenyl)piperazin-1-yl)phenyl)-1H-1,2,4-triazol-5(4H)-one (1) designed using 4-(4-(4-aminophenyl)piperazin-1-yl)phenol (2) and (S)-N′-(2-(benzyloxy)propylidene)formohydrazide (3) as start materials is successfully obtained via a multistep synthesis and finally characterized by IR, 1H NMR, and single crystal X-ray diffraction. In addition, the in vitro anticancer activities of newly synthesized compound 1 are evaluated against three human bone cancer cell lines U2OS, Saos-2, and GC9811. In addition, the molecular docking is used to study the potential antiviral activity of 1 by calculating the binding sites for the 1AS0 protein.

Journal of Structural Chemistry. 2019;60(7):1173-1179
pages 1173-1179 views

Synthesis, Crystal Structure, DNA Binding, and Cytotoxicity of a Zn(II) Complex Constructed from Phenylacetic Acid

Gao X., Gao E., Zhu M.

Аннотация

A novel Zn(II) complex with the formula {[ZnL2(dibe)2]·2H2O}n (synthesized using a carboxylic acid ligand, L = phenylacetic acid, dibe = 4,4′-bipyridine (bipy)) is synthesized at room temperature, characterized and its DNA binding, cleavage, anticancer properties are studied by elemental analysis, infrared spectroscopy, and single crystal X-ray diffraction. The interaction of the complex with fish sperm DNA (FS-DNA) is monitored, which reveals that the complex has the ability to bind to FS-DNA. The complex is further studied for the gel electrophoresis assay with supercoiled plasmid pBR322 DNA. In addition, anticancer activities of the metal complex investigated through MTT in vitro assays, indicate that the complex shows good cytotoxic activity against cancer cell lines. Flow cytometry and apoptosis experiments show that the complex induces apoptosis of HeLa cells, which demonstrates that the complex exhibits a significant cancer cell inhibitory rate.

Journal of Structural Chemistry. 2019;60(7):1180-1188
pages 1180-1188 views

Erratum

Erratum to: Crystal Structure and Luminescent Property of a New Two-Dimensional Polymer Based on 1,4-Bis(4-(Imidazole-1-YL)Benzyl)Piperazine

Zhang C., Tao J., Wang J.

Аннотация

In the original article there was a mistake in the information of the corresponding author. The correct spelling of the names of the authors and their order is: C. Zhang, J.-Q. Tao, and J. Wang*.

Journal of Structural Chemistry. 2019;60(7):1189-1189
pages 1189-1189 views

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