Chloroplast microsatellites in barley: the reduction of variability spectrum in cultivated forms
- Authors: Lukhanina N.V1, Sinyavskaya M.G1, Goloenko I.M1, Davydenko O.G1
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Affiliations:
- Institute of Genetics and Cytology of the NASB, Minsk, Republic of Belarus
- Issue: Vol 4, No 1 (2006)
- Pages: 17-21
- Section: Articles
- URL: https://journals.rcsi.science/ecolgenet/article/view/5514
- DOI: https://doi.org/10.17816/ecogen4117-21
- ID: 5514
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Abstract
The chloroplast genomes of 67 accessions of Hordeum vulgare L were surveyed for simple sequence repeat polymorphism. Seven SSR loci were investigated, trnL/trnF and psbI-trnS intergenic regions, as well as two regions 3' trnS genes were polymorphic. The rare variants of these loci were revealed and five rare accessions were found. Our results show an extremely low level of cpDNA polymorphism of cultivated barley.
Keywords
About the authors
Natalia V Lukhanina
Institute of Genetics and Cytology of the NASB, Minsk, Republic of Belarus
Email: cytoplasmic@mail.ru
Marina G Sinyavskaya
Institute of Genetics and Cytology of the NASB, Minsk, Republic of Belarus
Email: cytoplasmic@mail.ru
Inessa M Goloenko
Institute of Genetics and Cytology of the NASB, Minsk, Republic of Belarus
Email: cytoplasmic@mail.ru
Oleg G Davydenko
Institute of Genetics and Cytology of the NASB, Minsk, Republic of Belarus
Email: cytoplasmic@mail.ru
References
- Давыденко О.Г. Роль цитоплазматической изменчивости в эволюции и селекции растений.//Цитология и генетика. -1989. -Т. 24. -С. 66-76.
- Даниленко Н.Г., Давыденко О.Г. Миры геномов органелл. -Минск: Технология, 2003. -494 с.
- Рыжова Н.Н., Кочиева Е.З. Анализ микросателлитных локусов хлоропластного генома перца (род Capsicum).//Генетика. -2004. -T. 40, № 8. -C. 1093-1098.
- Aoki K., Suzuki T., Murakami N. Intraspecific sequence variation of chloroplast DNA among the component species of evergreen broad-leaved forests in Japan.//J. Plant Res. -2003. -Vol. 116. -P. 337-344.
- Chen J., Tauer C.G., Huang Y. Paternal chloroplast inheritance patterns in pine hybrids detected with trnL-trnF intergenic region polymorphism.//Theoretical and Applied Genetics. -2002. -Vol. 104. -P. 1307-1311.
- Dane F., Lang P., Bakhtiyarova R. Comparative analysis of chloroplast DNA variability in wild and cultivated Citrullus speciaes.//Theoretical and Applied Genetics. -2003. -Vol. 108. -P. 958-966.
- Edwards K., Johnstone C., Thompson C. A simple and rapid method for the preparation of plant genomic DNA for PCR analysis.//Nucleic Acids Res. -1991. -Vol. 19. -P. 1349.
- Goloenko I.M., Teljatnicova A.A., Lukhanina N.V., Davydenko O.G. Some nuclei-cytoplasmic combinations of barley substituted lines collection change the productivity characteristics.//In Genetic Collection, Isogenic and Alloplasmic Lines: Proc. Intern. Conf. Jul 30-Aug 3, 2001. -Novosibirsk, 2001 -P. 70-74.
- Ishii T., Mori N., Ogihara Y. Evaluation of allelic diversity at chloroplast microsatellite loci among common wheat and its ancestral species.//Theoretical and Applied Genetics. -2001. -Vol. 103. -P. 896-904.
- Molina-Cano J.-L., Russell J.R., Moralejo M.A. et al. Cloroplast DNA microsatellite analysis supports a polyphyletic origin for barley.//Theoretical and Applied Genetics. -2005. -Vol. 110. -P. 613-619.
- Nei M. Definition and estimation of fixation indices.//Evolution -1986. -Vol. 40. -P. 643-645.
- Nesbitt T.C., Tanksley S.D. Comparative sequencing in the genus Lycopersicon: Implications for the evolution of fruit size in the domestication of cultivated tomatoes.//Genetics. -2002. -Vol. 162. -P. 365-379.
- Nevo E., Beharav A., Meyer R.C. et al. Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in Evolution Canyon, Israel.//Biological Journal of the Linnean Society. -2005. -Vol. 84. -P. 205-224.
- Ogihara Y., Isono K., Kojima T. et al. Structural features of a wheat plastome as reveald by complete sequencing of chloroplast DNA.//Mol. Genet. Genomics. -2002. -Vol. 266. -P. 740-746.
- Provan J., Pamela M. Biss, Darragh Mc Meel et al. Universal primers for the amplification of chloroplast microsatellites in grasses (Poaceae).//Molecular Ecology Notes. -2004. -Vol.4. -P. 262-264.
- Provan J., Powell W., Dewar H. et al. An extreme cytoplasmic bottleneck in the modern European cultivated potato (Solanum tuberosum) is not reflected in decreased levels of nuclear diversity.//Genetics. -1999a. -Vol. 266. -P. 633-639.
- Provan J., Russell J.R., Booth A., Powell W. Polymorphic chloroplast simple sequence repeat primers for systematic and population studies in the genus Hordeum.//Molecular Ecology. -1999b. -Vol. 8. -P. 505-511.
- Russell J.R., Booth A., Fuller J.D. et al. Patterns of polymorphism detected in the chloroplast and nuclear genomes of barley landraces sampled from Syria and Iordan.//Theoretical and Applied Genetics. -2003. -Vol. 107, N 3. -P. 413-421.
- Tsunewaki K. Genetic diversity of the cytoplasm in Triticum and Aegilops. -Tokyo: Japan. Soc. Prom. Sci., 1980. -190 p.