Analysis of the genetic diversity of Ayrshire cattle in Russia. Message 2. Genome analysis based on data on the distribution of ROH patterns in Ayrshire cows
- Authors: Ryabova A.E.1, Pozovnikova M.V.1, Dementieva N.V.1, Shcherbakov Y.S.1, Tulinova O.V.1, Romanova E.A.1, Azovtseva A.I.1
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Affiliations:
- Russian Research Institute of Farm Animal Genetics and Breeding — Branch of the L.K. Ernst Federal Research Center for Animal Husbandry
- Issue: Vol 21, No 3 (2023)
- Pages: 235-248
- Section: Genetic basis of ecosystems evolution
- URL: https://journals.rcsi.science/ecolgenet/article/view/148881
- DOI: https://doi.org/10.17816/ecogen568871
- ID: 148881
Cite item
Abstract
BACKGROUND: The analysis of ROH distribution is an important focus of genetic resource conservation programs of cattle. Characterization of ROH-islands allows to identify genetic factors affecting productivity traits of dairy cattle.
AIM: was to analyze intra-breed genetic diversity and population structure of Ayrshire cattle, based on data on distribution of homozygosity patterns, as well as to identify loci associated with selection intensity and utility traits.
MATERIALS AND METHODS: ROH distribution data were obtained using whole genome genotyping on Illumina BovineSNP50 (50K) DNA chips (Illumina Inc., USA). The object of the study was the DNA of Ayrshire cows (600 cows), which belonged to farms with different levels of selection and breeding work.
RESULT: The results of our studies showed a generally similar level of inbredness of the analyzed Ayrshire cattle herds. The homogeneity of the population is confirmed by a large number of animals (72.83%) with FROH values between 0.10 and 0.20. Cluster analysis revealed consolidated groups of individuals, due to their ancestral origins. The discovered ROH-patterns included 268 genes, 32 of which were involved in regulation of the synthesis of protein and fat milk components. The results obtained may be used in breeding programs for Ayrshire cattle in Russia.
CONCLUSIONS: The Russian population of Ayrshire cattle is distinguished by unique qualities in protein and fat milk composition and genome architecture, while maintaining genetic diversity and insignificant traces of Ayrshire cattle gene pool.
Keywords
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##article.viewOnOriginalSite##About the authors
Anna E. Ryabova
Russian Research Institute of Farm Animal Genetics and Breeding — Branch of the L.K. Ernst Federal Research Center for Animal Husbandry
Author for correspondence.
Email: aniuta.riabova2016@yandex.ru
ORCID iD: 0000-0003-2362-2892
SPIN-code: 4336-0310
Scopus Author ID: 57941963400
junior research associate
Russian Federation, Saint PetersburgMarina V. Pozovnikova
Russian Research Institute of Farm Animal Genetics and Breeding — Branch of the L.K. Ernst Federal Research Center for Animal Husbandry
Email: pozovnikova@gmail.com
ORCID iD: 0000-0002-8658-2026
SPIN-code: 5441-6996
Scopus Author ID: 57200383317
Cand. Sci. (Biol.), senior research associate
Russian Federation, Saint PetersburgNatalia V. Dementieva
Russian Research Institute of Farm Animal Genetics and Breeding — Branch of the L.K. Ernst Federal Research Center for Animal Husbandry
Email: dementevan@mail.ru
ORCID iD: 0000-0003-0210-9344
SPIN-code: 8768-8906
Scopus Author ID: 57221619264
Cand. Sci. (Biol.), leading research associate
Russian Federation, Saint PetersburgYury S. Shcherbakov
Russian Research Institute of Farm Animal Genetics and Breeding — Branch of the L.K. Ernst Federal Research Center for Animal Husbandry
Email: yura.10.08.94.94@mail.ru
ORCID iD: 0000-0003-2949-0747
SPIN-code: 3547-1009
Scopus Author ID: 57189759592
junior research associate
Russian Federation, Saint PetersburgOlga V. Tulinova
Russian Research Institute of Farm Animal Genetics and Breeding — Branch of the L.K. Ernst Federal Research Center for Animal Husbandry
Email: tulinova_59@mail.ru
SPIN-code: 3973-6337
Scopus Author ID: 57200384693
Cand. Sci. (Agricultural), leading research associate
Russian Federation, Saint PetersburgElena A. Romanova
Russian Research Institute of Farm Animal Genetics and Breeding — Branch of the L.K. Ernst Federal Research Center for Animal Husbandry
Email: splicing86@gmail.com
ORCID iD: 0000-0002-4225-5533
SPIN-code: 1444-3678
junior research associate
Russian Federation, Saint PetersburgAnastasia I. Azovtseva
Russian Research Institute of Farm Animal Genetics and Breeding — Branch of the L.K. Ernst Federal Research Center for Animal Husbandry
Email: ase4ica15@mail.ru
ORCID iD: 0000-0002-2963-378X
SPIN-code: 5784-2786
junior research associate
Russian Federation, Saint PetersburgReferences
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