CBP AND RAD21 BIND AT THE TERMINI OF FORUM DOMAINS IN HUMAN CHROMOSOMES

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Abstract

Forum-domains are 50–100-kb stretches of DNA delimited by the hot sport of DSBs. These domains possess coordinately expressed genes. However, molecular mechanisms of such regulation are not clear. It is supposed that the proteins specifically binding at the termini of domains could be involved in coordinated regulation of expression. In this study we used the results of precise mapping of hot spots of DSBs and ChIP-Seq data for ten nuclear proteins in HEK293T cell line for a search of proteins specifically binding at forum-domains termini. We detected that two proteins – CBP and RAD24-, which are known to be involved in epigenetic regulation of gene expression and formation of 3D chromosomal structures, bind at the termini. We suppose that these proteins could be involved in coordinated expression of genes in forum-domains.

About the authors

N. A. Tchurikov

Engelhardt Institute of Molecular Biology Russian Academy of Sciences

Author for correspondence.
Email: tchurikov@eimb.ru
Russian Federation, Moscow

I. R. Alembekov

Engelhardt Institute of Molecular Biology Russian Academy of Sciences

Email: tchurikov@eimb.ru
Russian Federation, Moscow

E. S. Klushevskaya

Engelhardt Institute of Molecular Biology Russian Academy of Sciences

Email: tchurikov@eimb.ru
Russian Federation, Moscow

P. B. Meilakh

Engelhardt Institute of Molecular Biology Russian Academy of Sciences

Email: tchurikov@eimb.ru
Russian Federation, Moscow

A. N. Kretova

Engelhardt Institute of Molecular Biology Russian Academy of Sciences

Email: tchurikov@eimb.ru
Russian Federation, Moscow

O. D. Managrova

Engelhardt Institute of Molecular Biology Russian Academy of Sciences

Email: tchurikov@eimb.ru
Russian Federation, Moscow

G. I. Kravatskaya

Engelhardt Institute of Molecular Biology Russian Academy of Sciences

Email: tchurikov@eimb.ru
Russian Federation, Moscow

Y. V. Kravatsky

Engelhardt Institute of Molecular Biology Russian Academy of Sciences

Email: tchurikov@eimb.ru
Russian Federation, Moscow

References

  1. Tchurikov N.A., Kretova O.V., Sosin D.V., Zykov I.A., Zhimulev I.F., Kravatsky Y.V. // Genome-wide profiling of forum domains in Drosophila melanogaster. Nucleic Acids Res. 2011, 39, 3667–3685.
  2. Tchurikov N., Krasnov A.N., Ponomarenko N.A., Golova Y.B., Chernov B.K. // Forum domain in Drosophila melanogaster cut locus possesses looped domains inside. Nucleic Acids Res. 1998, 26, 3221–3227.
  3. Tchurikov N.A., Kretova O.V., Fedoseeva D.M., Sosin D.V., Grachev S.A., Serebraykova M.V., Romanenko S.A., Vorobieva N.V., Kravatsky Y.V. // DNA Double-Strand Breaks Coupled with PARP1 and HNRNPA2B1 Binding Sites Flank Coordinately Expressed Domains in Human Chromosomes. PloS Genet. 2013. V. 9. P. e1003429.
  4. Dudás A., Chovanec M. // DNA double-strand break repair by homologous recombination. Mutat Res. 2004. V. 566 (2), 131–167.
  5. Vilenchik M.M., Knudson A.G. // Radiation dose-rate effects, endogenous DNA damage, and signaling resonance. Proc. Natl.Acad. Sci. USA 2006, V. 103. P. 17874–17879.
  6. Tchurikov N.A., Yudkin D.V., Gorbacheva M.A., Kulemzina A.I., Grischenko I.V., Fedoseeva D.M., Sosin D.V., Kravatsky Y.V., Kretova, O.V. // Hot spots of DNA double-strand breaks in human rDNA units are produced in vivo. Sci. Rep. 2016. V. 6. P. 25866.
  7. Rinaldi C., Pizzul P., Longhese M.P., Bonetti D. // Sensing R-Loop-Associated DNA Damage to Safeguard Genome Stability. Front. Cell Dev. Biol. 2021. V. 8. P. 618157.
  8. Roos W.P., Kaina B. // DNA damage-induced cell death by apoptosis. Trends Mol Med. 2006. V. 12. № 9. P. 440–50.
  9. Stempor P., Ahringer J. // SeqPlots–Interactive software for exploratory data analyses, pattern discovery and visualization in genomics. Wellcome Open Res. 2016. V. 1. P. 14.
  10. Martire S., Nguyen J., Sundaresan A. et al. // Differential contribution of p300 and CBP to regulatory element acetylation in mESCs. BMC Mol and Cell Biol. 2020 V. 21. P. 55.
  11. Cheng H., Zhang N., Pati D. // Cohesin subunit RAD21: From biology to disease. Gene. 2020. V. 758, 2020. P. 44966.
  12. Hoffmann A., Roeder R.G. // Cloning and characterization of human TAF20/15. Multiple interactions suggest a central role in TFIID complex formation. J. Biol. Chem. 1996. V. 271 (30). P. 18194–18202.
  13. Yu Y., Reed R. // FUS functions in coupling transcription to splicing by mediating an interaction between RNAP II and U1 snRNP. Proc Natl Acad Sci U S A. 2015. V. 112 (28). P. 8608–8613.
  14. Sun Y., Xu X., Zhao W., Zhang Y., Chen K., Li Y., Wang X., Zhang M., Xue B., Yu W., Hou Y., Wang C., Xie W., Li C., Kong D., Wang S., Sun Y. // RAD21 is the core subunit of the ohesion complex involved in directing genome organization. Genome Biol. 2023. V. 24 (1). P. 155.
  15. Wei S., Li C., Yin Z., Wen J., Meng H., Xue L., Wang J. // Histone methylation in DNA repair and clinical practice: new findings during the past 5-years”. J Cancer. 2018 V. 9 (12). P. 2072–2081.

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