“Rapid DNA” ― new horizons of forensic DNA profiling using full cycle genetic analyzers

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Abstract

BACKGROUND: The study is a part of a comprehensive research conducted at the Russian Center of Forensic Medical Expertise of the Ministry of Health of the Russian Federation with the ultimate goal of development and implementation of new effective technologies for molecular genetic identity testing and kinship analysis in the realm of national forensic expertise.

AIMS: The objective of the study is to evaluate the possibilities of the “Rapid DNA” technology in application to forensic DNA analysis. One may expect that this technology in the future will ensure the creation of an operational and highly effective procedure for forensic DNA profiling.

MATERIAL AND METHODS: The methodical basis of the work is the genotyping of polymorphic STR-loci of chromosomal DNA in biological material using high-tech fully automated (full cycle) analytical platform RapidHIT: namely, RapidHIT 200 (Integenx, USA) and RapidHIT-ID (Life Technologies/Thermo Fisher, IntegenX (USA) instruments.

RESULTS: Buccal epithelium and blood samples, while being the most common in a forensic DNA testing, have been examined as a validation test objects. Then experiments were carried out with real expert material such as cigarette butts, hair, nails, bones, chewing gum; swabs from different surfaces were examined as test samples as well.

CONCLUSIONS: Based on the data obtained, it can be stated that the Rapid DNA technology as it is implemented in the full-cycle genetic analyzers IntegenX RapidHIT 200 (Integenx, USA) and RapidHIT ID (Thermo Fisher, IntegenX, USA), according to the criteria studied, in general supports the idea of to be introduced into the practice of forensic DNA analysis.

About the authors

Elena Yu. Zemskova

Russian Centre of Forensic Medical Expertise

Email: zemskova@rc-sme.ru
ORCID iD: 0000-0002-2669-0877
SPIN-code: 5835-2788

MD, Cand. Sci. (Med.)

Russian Federation

Natalia R. Sokolova

Russian Centre of Forensic Medical Expertise

Email: sokolova.n@rc-sme.ru
ORCID iD: 0000-0002-0481-7646
SPIN-code: 9381-3968

MD

Russian Federation, 12/13 Polikarpova str., Moscow, 125284

Sergey V. Isupov

Limited Liability Company “LABINDEX”

Email: sergey.isupov@labindex.ru
ORCID iD: 0000-0002-9437-4569
Russian Federation, 12/13 Polikarpova str., Moscow, 125284

Pavel L. Ivanov

Russian Centre of Forensic Medical Expertise

Author for correspondence.
Email: dna@rc-sme.ru
ORCID iD: 0000-0002-4753-3125

Dr. Sci. (Biol.), Professor

Russian Federation, 12/13 Polikarpova str., Moscow, 125284

References

  1. Hopwood AJ, Hurth C, Yang J, et al. Integrated microfluidic system for rapid forensic DNA analysis: sample collection to DNA profile. Anal Chem. 2010;82(16):6991–6999. doi: 10.1021/ac101355r
  2. Liu P, Li X, Greenspoon SA, et al. Integrated DNA purification, PCR, sample cleanup, and capillary electrophoresis microchip for forensic human identification. Lab Chip. 2011;11(6):1041–1048. doi: 10.1039/c0lc00533a
  3. DiZinno J. 90 Minute DNA Profiles on a Fully Validated, Automated System. In: Proc. 7th International DNA Users’ Conference for Investigative Officers, 7 Nov 2013 Interpol Headquarters, Lyon, France. 2013.
  4. Gold S. RapidDNA: a game changer in the law enforcement identification stakes. Biometric Technology Today. 2013;(1):7–10. doi: 10.1016/S0969-4765(13)70015-8
  5. LaRue BL, Moore A, King JL, et al. An evaluation of the RapidHIT® system for reliably genotyping reference samples. Forensic Sci Int Genet. 2014;13:104–111. doi: 10.1016/j.fsigen.2014.06.012
  6. Date-Chong M, Hudlow WR, Buoncristiani MR. Evaluation of the RapidHIT™ 200 and RapidHIT GlobalFiler® Express kit for fully automated STR genotyping. Forensic Sci Int Genet. 2016;23:1–8.
  7. GlobalFiler™ and GlobalFiler™ IQC PCR Amplification Kits [Internet]. Life Technologies Ltd. 7 Kingsland Grange. Woolston, Warrington WA1 4SR. United Kingdom. Available from: https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4477604.pdf. Accessed: 15.10.2021.

Supplementary files

Supplementary Files
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1. JATS XML
2. Fig. 1. Analitycal electropherograms obtained with RapidHIT 200: a ― dried buccal swab on standard applicator; b ― dried blood sample deposited on paper card (punch ⌀ 1,2 мм)

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3. Fig. 2. Analitycal electropherograms (a partial image is shown ) obtained for the two samples of the same buccal swab: a ― with RapidHIT 200; b ― with ABI 3500 (through standard DNA profiling procedure).

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4. Fig. 3. Analitycal electropherograms obtained with RapidHIT 200: a ― cigarette butt; b ― swab from the edge of a coffee cap.

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5. Fig. 4. Analitycal electropherograms (a partial image is shown) obtained for the same blood sample with the genotype D1S1656 {16.3 ; 17}: a ― with RapidHIT ID; b ― with ABI 3500 (through standard DNA profiling procedure).

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Copyright (c) 2021 Zemskova E.Y., Sokolova N.R., Isupov S.V., Ivanov P.L.

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This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

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