Ab initio and QSAR study of several etoposides as anticancer drugs: Solvent effect
- Authors: Sayyadi kord Abadi R.1, Alizadehdakhel A.2, Dorani Shiraz S.1
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Affiliations:
- Department of Chemistry, Rasht Branch
- Department of Chemical Engineering, Rasht Branch
- Issue: Vol 11, No 2 (2017)
- Pages: 307-317
- Section: Chemical Physics of Biological Processes
- URL: https://journals.rcsi.science/1990-7931/article/view/199119
- DOI: https://doi.org/10.1134/S1990793117020130
- ID: 199119
Cite item
Abstract
Quantitative structure-activity relationship (QSAR) of twenty-five different Etoposides derivatives was estimated by means of multiple linear regression (MLR), artificial neural network (ANN), simulated annealing (SA) and genetic algorithm (GA) techniques. The geometric compounds were selected as optimized samples using Gaussian 09W at B3LYP/6-31g. A high predictive ability was observed for the MLR-MLR, MLR-ANN, SA-ANN, MLR-GA and GA-ANN models, with the root mean sum square errors (RMSE) of 0.6265, 0.223, 0.195, 0.161 and 0.061 in gas phase and 0.5864, 0.226, 0.061, 0.106, and 0.0320 in the solvent phase, respectively (N = 25). The results obtained using the GA-ANN method indicated that the activity of derivatives of Etoposide depends on several parameters including Mor 14u, EEig12d, VEA1 and ICR descriptors in gas phase and RDF065p, Qxxe, ISH, RDF 050v and GATS6p descriptors in the solvent phase. Finally, the comparison of the quality of ANN with different MLR methods showed that ANN has a better predictive ability.
Keywords
About the authors
R. Sayyadi kord Abadi
Department of Chemistry, Rasht Branch
Author for correspondence.
Email: sayyadi@iaurasht.ac.ir
Iran, Islamic Republic of, Rasht
A. Alizadehdakhel
Department of Chemical Engineering, Rasht Branch
Email: sayyadi@iaurasht.ac.ir
Iran, Islamic Republic of, Rasht
S. Dorani Shiraz
Department of Chemistry, Rasht Branch
Email: sayyadi@iaurasht.ac.ir
Iran, Islamic Republic of, Rasht
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