Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology is a peer-reviewed journal that publishes original articles on physical, chemical, and molecular mechanisms that underlie basic properties of biological membranes and mediate membrane-related cellular functions. The primary topics of the journal are membrane structure, mechanisms of membrane transport, bioenergetics and photobiology, intracellular signaling as well as membrane aspects of cell biology, immunology, and medicine. The journal is multidisciplinary and gives preference to those articles that employ a variety of experimental approaches, basically in biophysics but also in biochemistry, cytology, and molecular biology. The journal publishes articles that strive to unveil membrane and cellular functions through innovative theoretical models and computer simulations. Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology is no longer a translation journal. It publishes manuscripts originally submitted in English and translated works. The sources of content are indicated at the article level. The peer review policy of the journal is independent of the manuscript source, ensuring a fair and unbiased evaluation process for all submissions. As part of its aim to become an international publication, the journal welcomes submissions in English from all countries.
 

PEER REVIEW and EDITORIAL POLICY

 

The journal follows the Springer Nature Peer Review Policy, Process and Guidance, Springer Nature Journal Editors' Code of Conduct, and COPE's Ethical Guidelines for Peer-reviewers.

Approximately 10% of the manuscripts are rejected without review based on formal criteria as they do not comply with the submission guidelines. Each manuscript is assigned to one or two peer reviewers. The journal follows a single-blind reviewing procedure. The average period from submission to the first decision is usually at most 28 days. The approximate rejection rate is 15%. The final decision on the acceptance of a manuscript for publication is made by the Editor-in-Chief.

If Editors, including the Editor-in-Chief, publish in the journal, they do not participate in the decision-making process for manuscripts where they are listed as co-authors.

Special issues published in the journal follow the same procedures as all other issues. If not stated otherwise, special issues are prepared by the members of the editorial board without guest editors.
 

Current Issue

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Vol 12, No 4 (2018)

Reviews

The Role of Transmembrane Glycoproteins, Integrins and Serpentines in Platelet Adhesion and Activation
Sveshnikova A.N., Belyaev A.V., Panteleev M.A., Nechipurenko D.Y.
Abstract

Platelets are unique cells of human body: they lack nucleus, are rather small in size (1–2 μm) and involved in several physiological functions, including hemostasis, immunity and angiogenesis. Platelets play a key role in the initiation of thrombosis upon injury of the blood vessels of the arterial bed, in which blood flows with high shear rates are observed. According to the generally accepted concepts, the reaction of platelets to endothelial injury at local shear rates of more than 1000 s–1 is the primary binding of the GPIb-IX-V receptor complex glycoproteins with von Willebrand factor, a large multimeric blood protein which can specifically bind to collagen fibers. For further performance of their functions, and first of all, for stable attachment to the injured surface, platelet has to be activated. There are more than ten types of receptors on the platelet membrane, which trigger several cascades of intracellular signaling that leads to the restructuring of the cytoskeleton, granule secretion and activation of integrins, which provide the ability of platelets to strong adhesion and aggregation. This review is focused on the biophysical aspects of the interaction of transmembrane glycoproteins and integrins with extracellular ligands, as well as modern ideas about the mechanisms of platelet activation that is necessary to stabilize their primary adhesion and aggregation.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):315-326
pages 315-326 views

Articles

Effect of Noradrenaline on the Kinetics of Evoked Acetylcholine Secretion in Mouse Neuromuscular Junction
Tsentsevitsky A.N., Kovyazina I.V., Bukharaeva E.A., Nikolsky E.E.
Abstract

In contrast to frog neuromuscular synapses, where noradrenaline (norepinephrine) and its analogues caused synchronization of the acetylcholine release process, in mouse diaphragm endplates noradrenaline increased the degree of asynchrony of neurosecretion. The effect of noradrenaline on release timing persisted at different levels of external calcium ions (0.25–2.0 mM) and was abolished in presence of both α- and β‑adrenoblockers phentolamine and propranolol. The computer reconstruction of multiquantal endplate currents accounting for experimentally observed modification of release kinetics under noradrenaline showed that the rise time of postsynaptic response changes to a greater extent than the amplitude and falling phase of the multiquantal responses. We conclude that there exists a principal difference in the action of noradrenaline in the cholinergic neuromuscular synapses of warm-blooded and cold-blooded animals that can be accounted for by the differences in the type of adrenoreceptors involved in the modulation of synaptic transmission and/or in the involvement of distinct intracellular pathways triggered by receptor activation.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):327-332
pages 327-332 views
Mathematical Model of Platelet Intracellular Signaling After Activation by Fucoidan
Martyanov A.A., Balabin F.A., Maiorov A.S., Shamova E.V., Panteleev M.A., Sveshnikova A.N.
Abstract

Blood platelets are the cells responsible for prevention of the blood loss. Fucoidan is a brown algae extract that is known to activate platelets via C-type lectin receptor of the second type. On the other hand, different fucoidans are now considered as perspective immunomodulators. Thus, application of fucoidan as a medicinal drug seems to be contradictory. In this work we studied activation of platelets by fucoidan in silico and in vitro. The computational model describes the behavior of the participants of the fucoidan receptor signaling cascade. The model was validated with available experimental data published earlier. In order to confirm the model predictions, the fucoidan-induced activation of platelets was assessed in flow cytometry and aggregometry experiments. The resultant model describes changes in the activity of tyrosine kinases of Syk and Sarc family and subsequent activation of phospholipase Cγ2. One of the main model prediction is a significant increase in the platelet cytosolic calcium level after the activation by fucoidan. This prediction was confirmed in the experiments. Thus, fucoidan, as a true platelet activator, cannot be applied in therapy.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):333-343
pages 333-343 views
Binding of Potassium Ions Inside the Access Channel at the Cytoplasmic Side of Na+,K+-ATPase
Vishnyakova V.Y., Tashkin V.Y., Terentjev A.O., Apell H., Sokolov V.S.
Abstract

Binding of potassium ions through an access channel from the cytoplasmic side of Na+,K+-ATPase and the effect of pH and magnesium ions on this process have been studied. The studies were carried out by a previously developed method of measuring small increments of the admittance (capacitance and conductivity) of a compound membrane consisting of a bilayer lipid membrane with adsorbed membranes fragments containing Na+,K+-ATPase. The capacitance change of the membrane with the Na+,K+-ATPase was induced abruptly by release of protons from a bound form (caged H+) upon a UV-light flash in the absence of magnesium ions. The change of admittance consisted of an initial fast jump and a slow relaxation to a stationary value within a time of about 1–2 s. The kinetics of the capacitance relaxation depended on pH and the concentration of magnesium and potassium ions. The dependence of the rapid capacitance jump on the potassium concentration corresponded to the predictions of the model developed earlier that describes binding of sodium or potassium ions in competition with protons. The effect of magnesium ions can be explained by the assuming that they bind to the Na+,K+-ATPase and affect binding of potassium ions because of either changes in protein conformation or the creation of an electrostatic field in the access channel on the cytoplasmic side.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):344-351
pages 344-351 views
Modeling of the Interaction of Viral Fusion Peptides with the Domains of Liquid-Ordered Phase in a Lipid Membrane
Alexandrova V.V., Galimzyanov T.R., Molotkovsky R.J.
Abstract

Membrane microdomains enriched with sphingomyelin and cholesterol, the so-called rafts, are thicker than the surrounding membrane. To smooth the thickness mismatch, the membrane is deformed, which leads to the formation of a complex asymmetric structure of the raft boundary. The rafts are of great importance in the process of viral infection of the cell: for example, in recent experiments it has been shown that the fusion peptide of human immunodeficiency virus (HIV) tends to be predominantly inserted at the raft boundary, and the effectiveness of the fusion was low in the absence of the rafts. It has been noticed in these studies that such preferential distribution of fusion peptides was not found in the case of influenza virus. In the present paper, we modeled the interaction of fusion peptides with rafts by the methods of elasticity theory of lipid membranes. We have shown that the boundary of the liquid-ordered domains can act as an attractor for the fusion peptides: peptides distribute to the raft boundary and play the role of line-active membrane components. Our model enables to explain the difference of the behavior of different fusion peptides in the presence of rafts in the above mentioned example of the experimental data by different geometry of their insertion into the lipid monolayer. Our results show the fundamental mechanisms by which the geometry of fusion peptide insertion affects their distribution in the lipid membrane.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):352-359
pages 352-359 views
Collapse of Neuronal Energy Balance As a Basis of L-Homocysteine Neurotoxicity
Sitnikova L.S., Ivanova M.A., Stepanenko Y.D., Karelina T.V., Giniatullin R., Sibarov D.A., Abushik P.A., Antonov S.M.
Abstract

Using fluorescence detection methods, neurotoxic effects of L-homocysteine (HCY), L-glutamate (Glu), and N-methyl-D-aspartate (NMDA) on primary culture of rat cerebellar neurons were compared and the agonist-evoked intracellular Ca2+ responses and changes in mitochondrial membrane potential were studied. Long-term (5 h) action of HCY, Glu, or NMDA caused neuronal apoptosis and necrosis that was followed by a decrease of quantity of live cells to 40%. It was revealed using Fluo-3 that neurons differed by intracellular Ca2+ responses to 2-min applications of HCY. In response to all studied agonists, a brief peak or gradual increase of intracellular Ca2+ concentration was observed. Some neurons did not respond to HCY, but all responded to Glu and NMDA. A prolonged (60 min) treatment with agonists caused a rapid or delayed Ca2+ overload, while only a small portion of neurons were able to compensate the intracellular Ca2+ elevation. Six-minute applications of HCY or Glu to neurons induced similar changes of mitochondrial potential (φmit) measured by rhodamine123. In this protocol, the ability of the NMDA receptor agonists to cause the mitochondrial dysfunction could be arranged in the following order: NMDA > Glu = HCY. After a 60-min treatment the observed difference vanished because all of the agonists reduced φmit so that an uncoupling agent FCCP did not cause any additional changes in φmit. Thus, HCY-induced neurotoxicity in cerebellar neurons is comparable to that of Glu. In this feature cerebellar neurons differ from cortical neurons, in which HCY did not significantly change φmit during short-term application. This difference could be related with peculiarities of the HCY action on NMDA receptor subtypes expressed by cerebellar neurons.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):360-368
pages 360-368 views
Study of the Mechanism of the Neuron Sensitization to the Repeated Glutamate Challenge
Sharipov R.R., Krasilnikova I.A., Pinelis V.G., Gorbacheva L.R., Surin A.M.
Abstract

Exposure of cultured neurons to high concentrations of Glu leads to a strong depolarization of mitochondria, which develops synchronously with the secondary rise in the intracellular Ca2+ concentration (delayed calcium deregulation, DCD). In this study, using the primary culture of rat cerebellar neurons, we investigated the mechanism of neuronal sensitization, which manifests itself in the reduction of latent periods of DCD during repeated exposures to Glu. It was shown that the most likely cause of sensitization is the inability of mitochondria to maintain a high transmembrane potential (ΔΨm) as a result of an increase in the proton conductivity of the internal mitochondrial membrane, but not the opening of the mitochondrial permeability transition pore in the inner mitochondrial membrane. Mitochondrial dysfunction reduces the production of ATP, leading to the inability of neurons to quickly restore the concentration of Na+, ATP, and NADH in the intervals between successive Glu administrations. One of the reasons that aggravate the dysfunction of mitochondria and contribute to the sensitization of neurons to the repeated action of Glu is Ca2+ accumulated in the mitochondria during the first glutamate impact.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):369-381
pages 369-381 views
Participation of Endocytosis in Sodium Ion Uptake by the Cells of Arabidopsis thaliana (L.) Heynh in the Suspension Culture
Orlova Y.V., Majorova O.V., Khalilova L.A., Voronkov A.S., Fomenkov A.A., Nosov A.V., Popova L.G., Balnokin Y.V.
Abstract

The involvement of endocytosis in the Na+ ion uptake from the external medium by the cells of suspension culture derived from A. thaliana (Col-0) leaves was investigated. Na+ ion uptake by endocytic structures occurred following the addition of NaCl at the final concentration of 100 mM to the incubation medium. The presence of Na+ in membranous structures was recorded using fluorescence microscopy by colocalization of FM4-64, a marker of endocytosis structures, and Asante NaTRIUM Green-2 TMA+ salt (ANG-2 TMA), a membrane impermeable probe for sodium ions, that enabled the detection of Na+ absorbed by the cells via endocytosis but not through ion channels or transporters of the plasma membrane. Following a 1.5-h incubation of the cells in the presence of NaCl, FM4-64 and ANG-2 TMA, fluorescence of the probes was colocalized in structures with sizes ranging from 800 to 3000 nm. It was shown by electron microscopy that NaCl added to the cell incubation medium stimulated vesiculation and vacuolization of the cytoplasm, formation of plasma membrane invaginations, as well as fusion of microvacuoles with each other. The size of the structures, in which the colocalization of the two probes was detected by fluorescent microscopy, matched the size of the microvacuoles revealed by the electron microscopy. The obtained results indicate the capture of sodium ions contained in the apoplast by endocytosis invaginations, their subsequent internalization by the cells, and transfer into microvacuoles.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):382-389
pages 382-389 views

Short Communication

Forskolin As a Neuroprotector and Modulator of Glutamate-Evoked Ca2+ Entry into Cerebellar Neurons
Ivanova M.A., Sitnikova L.S., Stepanenko Y.D., Karelina T.V., Sibarov D.A., Abushik P.A., Antonov S.M.
Abstract

The analysis of neuronal viability of cerebellar neurons in primary culture during long-lasting (240 min) treatment with glutamate revealed that forskolin (1 μM), an adenylate cyclase activator, prevents apoptosis and necrosis of cells, thus exhibiting neuroprotective properties. As the cytotoxic action of glutamate causes an increase of the intracellular Ca2+ concentration, we further studied forskolin influence on glutamate-evoked Ca2+ responses of neurons. A short-time pretreatment with 1 μM forskolin significantly decreases Ca2+ entry into neurons during glutamate action. The obtained results demonstrate an important role of adenylate cyclase and cAMP in regulation of the Ca2+ entry into neurons and intracellular signaling pathways preventing neuronal death of cerebellar neurons in excytotoxic stress.

Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2018;12(4):390-393
pages 390-393 views

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