A simple and effective method for assessing chromatin diminution values in copepods using qPCR
- Авторы: Teterina V.1, Galimova Y.2, Sheveleva N.1, Sukhanova L.1, Mayor T.1, Zaitseva A.1, Kirilchik S.1
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Учреждения:
- Limnological Institute, Siberian Branch
- Institute of Molecular and Cellular Biology, Siberian Branch
- Выпуск: Том 52, № 11 (2016)
- Страницы: 1200-1203
- Раздел: Methods
- URL: https://journals.rcsi.science/1022-7954/article/view/188000
- DOI: https://doi.org/10.1134/S1022795416110168
- ID: 188000
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Аннотация
The value of chromatin diminution (CD) in different species of freshwater cyclopoid copepods can differ significantly. The biological and evolutionary roles of these differences remain unclear. To expand the knowledge on CD distribution and magnitude in this group of copepods, a quick method for its evaluation was required. This study proposes a simple approach for CD assessment in copepods using quantitative realtime PCR (qPCR). The magnitude of changes in the genome size was assessed by comparing fluorescence curves of qPCR fragments of target genes for pre- and post-diminution materials. The method was tested on four cyclopoid copepods species. In Cyclops kolensis, CD was assessed as 95.3 ± 1.2; in Acanthocyclops vernalis it was assessed at 94.6 ± 0.8%; at C. insignis, it was 82.3 ± 5.2%; and for the first time, CD was found in Megacyclops viridis at 91.1 ± 2.6%. The advantages of our approach are its rapidity, simplicity and minimal requirements of materials studied.
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Об авторах
V. Teterina
Limnological Institute, Siberian Branch
Автор, ответственный за переписку.
Email: veronika_t@inbox.ru
Россия, Irkutsk, 664033
Yu. Galimova
Institute of Molecular and Cellular Biology, Siberian Branch
Email: veronika_t@inbox.ru
Россия, Novosibirsk, 630090
N. Sheveleva
Limnological Institute, Siberian Branch
Email: veronika_t@inbox.ru
Россия, Irkutsk, 664033
L. Sukhanova
Limnological Institute, Siberian Branch
Email: veronika_t@inbox.ru
Россия, Irkutsk, 664033
T. Mayor
Limnological Institute, Siberian Branch
Email: veronika_t@inbox.ru
Россия, Irkutsk, 664033
A. Zaitseva
Limnological Institute, Siberian Branch
Email: veronika_t@inbox.ru
Россия, Irkutsk, 664033
S. Kirilchik
Limnological Institute, Siberian Branch
Email: veronika_t@inbox.ru
Россия, Irkutsk, 664033