Optimizing Image Reconstruction in SENSE Using GPU

Abstract

Parallel magnetic resonance imaging (MRI) (pMRI) uses multiple receiver coils to reduce the MRI scan time. To accelerate the data acquisition process in MRI, less amount of data is acquired from the scanner which leads to artifacts in the reconstructed images. SENSitivity Encoding (SENSE) is a reconstruction algorithm in pMRI to remove aliasing artifacts from the undersampled multi coil data and recovers fully sampled images. The main limitation of SENSE is computing inverse of the encoding matrix. This work proposes the inversion of encoding matrix using Jacobi singular value decomposition (SVD) algorithm for image reconstruction on GPUs to accelerate the reconstruction process. The performance of Jacobi SVD is compared with Gauss–Jordan algorithm. The simulations are performed on two datasets (brain and cardiac) with acceleration factors 2, 4, 6 and 8. The results show that the graphics processing unit (GPU) provides a speed up to 21.6 times as compared to CPU reconstruction. Jacobi SVD algorithm performs better in terms of acceleration in reconstructions on GPUs as compared to Gauss–Jordan method. The proposed algorithm is suitable for any number of coils and acceleration factors for SENSE reconstruction on real time processing systems.