R and S-Pyruvate-Containing Polysaccharide from the Cell Wall of Rathayibacter sp. VKM AC-2927

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Abstract

The structures of two cell wall glycopolymers from the strainRathayibacter sp. VKM Ac-2927 (family Microbacteriaceae, class Actinomycetes), isolated from linden leaves affected by leaf miner, were established using chemical and NMR spectroscopy methods. The first polymer, rhamnomannan, is a heterogeneous chain polymer composed of regularly alternating α-D-rhamnose and α-D-mannose residues linked by (1→3)- and (1→2)-glycosidic bonds and contains a minor amount of lateral β-D-xylopyranose residues (the structure is presented in the text). The second polymer, acetalized withR- andS-pyruvic acid, consists of branched tetrasaccharide units, →3)-α-D-Galp4,6-(R-Pyr)-(1→3)-β-D-Glcp-(1→6)-[β-D-Galp3,4-(S-Pyr)-(1→4)]-α-D-Manp-(1→. The structure of this polysaccharide is new for representatives of the genusRathayibacterand prokaryotes in general. The results of the present study indicate the structural diversity of microbial glycopolymers and are consistent with previously obtained data on the specificity of their composition for species of the genus Rathayibacter.

About the authors

M. S. Kokoulin

Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch, Russian Academy of Sciences

690022 Vladivostok, Russia

N. V. Potekhina

Faculty of Biology, Lomonosov Moscow State University

Email: potekhina@mail.ru
119234 Moscow, Russia

E. M. Tul’skaya

Faculty of Biology, Lomonosov Moscow State University

119234 Moscow, Russia

Y. V. Ospennikov

All-Russian Collection of Microorganisms (VKM), Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences

142290 Pushchino, Moscow Region, Russia

L. I. Evtushenko

All-Russian Collection of Microorganisms (VKM), Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences

142290 Pushchino, Moscow Region, Russia

References

  1. Evtushenko, L. I., and Dorofeeva, L. V. (2012) Genus XXII.RathayibacterZgurskaya, Evtushenko, Akimov and Kalakoutskii 1993, 147VP in Bergey’s manual of systematic bacteriology (Goodfellow, M., Kämpfer, P., Busse, H-J., Trujillo, M. E., Suzuki, K.-I., Ludwig, W., Whitman, W. B., eds) 2nd Edn, vol. 5. Springer, New York, Dordrecht, Heidelberg, London, pp. 953-964.
  2. Potekhina, N. V., Tul’skaya, E. M., Ospennikov, Y. V., and Evtushenko, L. I. (2023) Cell wall glycopolymers as chemotaxonomic characteristics of the genus and speciesRathayibacter,Microbiology,92, S2-S6,https://doi.org/10.1134/S0026261723603822.
  3. Shashkov, A. S., Potekhina, N. V., Tul’skaya, E. M, Dmitrenok, A. S., Senchenkova, S. N., Torgov, V. I., Dorofeeva, L. V., and Evtushenko, L. I. (2024) New lactate- and pyruvate-containing polysaccharide and rhamnomannan with xylose residues from the cell wall ofRathayibacter oskolensisVKM Ac-2121T,Carbohydr. Res.,540, 109145,https://doi.org/10.1016/j.carres.2024.109145.
  4. Шашков А. С., Потехина Н. В, Тульская Е. М., Дмитренок А. С., Сенченкова С. Н., Дорофеева Л. В., Евтушенко Л. И. (2024) Новыерамнозосодержащие гликополимеры клеточной стенкиRathayibacter festucaeВКМ Ac-1390T,Биохимия,89, 2081-2091,https://doi.org/10.31857/S0320972524120051.
  5. Tarlachkov, S. V., Ospennikov, Y. V., Demidov, A. V., Starodumova, I. P., Dorofeeva, L. V., Prisyazhnaya, N. V., et al. (2022) Draft genome sequences of 9 actinobacteria from the familyMicrobacteriaceaeassociated with insect- and nematode-damaged plants,Microbiol. Res. Announc.,11, e00487-22,https://doi.org/10.1128/mra.00487-22.
  6. Potekhina, N. V., Streshinskaya, G. M., Tul’skaya, E. M., and Shashkov, A. S. (2011) In Methods in Microbiology(Rainey, F. A., and Oren, A., eds), Vol. 38, Academic Press/Elsevier, Amsterdam, pp. 131-164,https://doi.org/10.1016/B978-0-12-387730-7.00020-6.
  7. Dmitrenok, A. S., Streshinskaya, G. M., Tul’skaya, E. M., Potekhina, N. V., Senchenkova, S. N., Shashkov, A. S., Bilan, M. I., Starodumova, I. P., Bueva, O. V., and Evtushenko, L. I. (2017) Pyruvylated cell wall glycopolymers ofPromicromonospora citreaVKM Ac-665TandPromicromonospora sp. VKM Ac-1028,Carbohydr. Res.,449, 34-142,https://doi.org/10.1016/j.carres.2017.07.008.
  8. Leontein, K., Lindberg, B., and Lonngren, J. (1978) Assignment of absolute configuration of sugars by g.l.c. of their acetylated glycosides formed from chiral alcohols,Carbohydr. Res.,62, 359-362,https://doi.org/10.1016/S0008-6215(00)80882-4.
  9. Shashkov, A. S., Lipkind, G. M., Knirel, Y. A., and Kochetkov, N. K. (1988) Stereometrical factors determining the effects of glycosylation on the13C chemical shifts in carbohydrates,Magn. Reson. Chem.,26, 735-747,https://doi.org/10.1002/mrc.1260260904.
  10. Garegg, P.J., Jansson, P.-E., Lindberg, B., Lindh, F., and Lönngren, J. (1980) Configuration of the acetal carbon atom of pyruvic acid acetals in some bacterial polysaccharides,Carbohydr. Res.,79, 127-132,https://doi.org/10.1016/S0008-6215(00)83666-6.
  11. Chun, J., Oren, A., Ventosa, A., Christensen, H., Arahal, D. R., da Costa M. S., Rooney, A. P., Yi, H., Xu, X. W., De Meyer, S., and Trujillo, M. E. (2018) Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes,Int. J. Syst. Evol. Microbiol.,68, 461-466,https://doi.org/10.1099/ijsem.0.002516.

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