Vol 60, No 3 (2019)
- Year: 2019
- Articles: 20
- URL: https://journals.rcsi.science/0022-4766/issue/view/9822
Article
Self-Assembly of Polynuclear Complexes Based on Spacer- Armed Pyridylazoles
Abstract
The paper reviews literature data on the structural features of coordination compounds based on spacer-armed pyridylazoles (pyrazoles, 1,2,4- and 1,2,3-triazoles, tetrazoles). It is shown that the realization of the “maximum site occupancy” (MSO) principle for the metal:ligand ratio of 2:3 leads to the self-assembly of polynuclear clusters, their metal cores having highly symmetric architectures of tetrahedron, trigonal prism, cube, truncated tetrahedron, and cuboctahedron.
Solving the Problem of Electron-Vibrational-Rotational Energy Levels of a Polyatomic Molecule of Arbitrary Structure in Generalized Coordinates
Abstract
In classical mechanics, the problems of the motion of objects with many degrees of freedom are formulated and solved using generalized coordinates rather than Cartesian coordinates. It is shown that a similar approach is also applicable to quantum mechanics. In both cases, the problem statement requires introduction of the potential function in appropriate coordinates and construction of the matrix of kinematic coefficients as a part of the classical expression of kinetic energy in the momentum representation. The possibility of the same problem statement is consistently discussed for the energy levels of polyatomic molecules. Some examples of its solution using generalized coordinates are provided.
Theoretical Modeling of the Structure of N-[2-[(Hydroxyalkylimino)Methyl]Phenyl]-4-Methylbenzene-Sulfamides and Their Mono- and Binuclear Copper(II) Complexes
Abstract
The paper presents a theoretical DFT UB3LYP/6-311++G(d,p) modeling of the structure and magnetic properties of Cu(II) coordination compounds with tridentate Schiff bases derived from 2-tosylaminobenzaldehyde and amino alcohols. It is shown that the elongation of the aliphatic chain in the amine part of ligand systems prevents the formation of binuclear metal-chelate structures. At the same time, mononuclear bis-chelate complexes, as well as mono-adducts containing a coordinated solvent molecule and a tridentate azomethine compound, are formed regardless of the number of methylene units.
Perfluorobenzocyclobutene Radical Anion: A Structurally Flexible Particle
Abstract
The method of time resolved magnetic field effects in the recombination fluorescence of spin-correlated radical ion pairs is used to detect for the first time the perfluorobenzocyclobutene radical anion. The quantum chemical analysis of the potential energy surface testifies that the particle is structurally flexible with respect to the pseudo-rotation coordinate. The calculated values of hyperfine interaction constants averaged over global minima are close to those estimated from the experimental data of time resolved magnetic field effects.
Computational Studies on the Rotamers of 4-Aryl-2-Oxo-1,2,3,4-Tetrahydropyrimidines and 4-Aryl-2-Oxo-1,2-Dihydropyrimidines
Abstract
The potential energy surface of 2-oxo-1,2,3,4-tetrahydropyrimidines (THPMs) is explored by density functional theory at the B3LYP level with a 6-31++G** basis set. All minimum and maximum points display a flat boat conformation of the heterocyclic ring in which the C4-aryl ring occupies a pseudo-axial position. In order to elucidate the comparative effect of the space orientation of the C4-aryl ring or the 5-CO group towards the heterocyclic ring on the total energy content of THPM and also the changes in some characteristic bond lengths and angles, these groups are rotated around the C4-Cn and C5-C7 single bonds, respectively. The results indicate an effect of the orientation of the 5-CO group on the investigated parameters compared to that of the C4-aryl ring. Natural bond orbital (NBO) analysis is carried out to investigate the effect of various intramolecular interactions and also intermolecular interactions with a medium in the calculation on the stabilization energy compared to those in the gas phase calculation. The results indicate that the dipole moments and also the charge densities on the specific atoms are effectively changed by the orientation of the C4-aryl ring and the 5-CO group towards the heterocyclic ring. In addition, bond rotations around the C4-Cn and C5-C7 single bonds in the oxidized compounds 2-oxo-1,2-dihydropyrimidines (DHPMs) are also carried out to compare the effects of these changes with those in THPMs.
Crystal Structure and DFT Study of N-(6-(Diphenylamino)Pyridin-2-Yl)-N-Phenylacetamide
Abstract
The title compound N-(6-(diphenylamino)pyridin-2-yl)-N-phenylacetamide (1) crystallizes in the monoclinic crystal system in the space group P21/n with unit cell parameters a = 9.571(7) Å, b = 9.333(6) Å, c = 22.431(16) Å, β = 100.669(10)°, V = 1969(2) Å3, and Z = 4. The structures of amine and amide units are planar. Dihedral angles of a pyridine ring with the amine and amide planes are 20.19(11)° and 37.21(8)°, respectively, indicating that an electron-rich diphenylamino group makes better conjugation with an electron-deficient pyridine ring. The oxygen atom of the amide group forms an intramolecular hydrogen bond with a hydrogen atom of the pyridine ring.
Raman Spectra of Molecular Crystals with Strong Hydrogen Bonds N-H⋯N in the Temperature Range of 5–300 K
Abstract
In this work, Raman spectra are recorded for the crystals of compounds containing N-H⋯N hydrogen bonds demonstrating proton tautomerism. The spectra are obtained in the temperature range of 5–300 K. The starting temperature of proton tunneling on the bonds is determined from the temperature dependence of peak positions of translational vibrations N⋯N participating in hydrogen bonding. The beginning of proton ordering is found from the half-width temperature dependence. Both parameters of proton tautomerism correlate with the type and strength of the hydrogen bond.
Vibrational Spectra and the Structure of the (1-x)Li0.42K0.58NO3 - xAl2O3 System
Abstract
Vibrational spectroscopy and X-ray diffraction are used to study phase compositions and structural properties of composite systems (composites) based on the LiNO3-KNO3 eutectic binary system with the addition of alumina nanopowder. High nanopowder concentrations are shown to cause amorphization of the salt system.
Computing of 93Nb NMR Parameters of Solid-State Niobates. The Geometry Matters
Abstract
This work aims at studying the influence of structural parameters on computations of the 93Nb quadrupolar interaction and chemical shift parameters in various niobates using first-principles approaches. We demonstrate that some of the computed NMR parameters, especially the isotropic chemical shift and the quadrupolar coupling constant, may differ either the X-ray crystal structure or a relaxed structure used for the calculation of the spectroscopic properties.
The Structure of Water Condensate Nuclei in the Field of Surface Crystalline Defects on the Basal Face of β-AgI
Abstract
The basal face of the silver iodide crystal in the absence of defects in unsaturated water vapors is covered with a continuous monomolecular film with a marked honeycomb-like cellular structure. Nanoscopic surface defects in the shape of a rectangular tower lead to the complete destruction of the film, so that the adsorption mechanism is changed entirely. The adsorption begins on the lateral faces of the defects, where the crystalline electric field prevents the formation of intermolecular hydrogen bonds. Water molecules are held by direct interactions with the crystal lattice ions and are aligned in the form of chains along the force lines of the electric field of the defect without forming stable clusters. At the next stage, the molecules are attached to the top of the defect, and only then the carrying surface between defects is filled. The adsorbate structure is resistant to temperature variations in the range from the freezing point to the boiling point of water. Computer simulation is performed by the Monte Carlo method using a detailed model implying the summation of polarization interactions over large distances.
Frequency Dispersion of the Specific Conductance Coefficient in Aqueous Electrolyte Solutions
Abstract
Analytical expressions for the dynamic specific conductance coefficient σ(ω) and the dynamic electroelasticity modulus ∊(ω) are obtained by solving kinetic equations using specific expressions for the potential energy Φab(r) of the interaction between structural units of the solution and the equilibrium radial distribution function gab(r). Friction coefficients βa and βb are calculated numerically; relaxation times τa, τb, τab along with ∊(ω) and σ(ω) values are determined for aqueous solutions of LiCl, NaCl, KCl, and CsCl as functions of the concentration c, density ρ, and temperature T in a wide frequency range ω. The obtained theoretical data are presented in the form of tables and graphs and are compared with experimental results show a satisfactory agreement between them.
Aggregation of Cationic Chlorin e6 Derivatives in Water and Aqueous Solutions of Polyvinilpyrrolidone
Abstract
Dynamic light scattering and electron absorption spectroscopy are used to study aggregation and disaggregation of mono-, di-, and tricationic chlorins (compounds I-III) as potential photosensitizers (PSs) for the photodynamic therapy (PDT) in water and aqueous solutions of polyvinylpyrrolidone (PVP). The average particle size and the nature of particle distribution are determined. Nanoaggregate compounds I-III are formed at the CPS values in the interval of 0.7-1.2 mmol/kg, the particle size increases during the storage of the solution. The size distribution of dispersed phase particles is monomodal only for the PSs with high water solubility. According to the absorption spectra, large (200–300 nm) PS aggregates are destroyed as a result of minor PVP additives, whereas small aggregates are not completely destroyed even in the presence of a 100-fold molar excess of the polymer surfactant.
An Intriguing Structural and Functional Analogy Between Large Cations and Anion-Centered (X2−Mn+) Clusters Exemplifiedby Double Chalcogenides K, Rb, Cs, TI(I) and Ag(I), Cu(I)
Abstract
The structures of chalcogenides where some large S2−, Se2−, Te2− anions are closely surrounded by 6–12 Cu+ or Ag+ cations in 3–4 coordination are considered. These compact (X2−Mn+) groups, being the anion-centered clusters (ACCs), can be thought as highly charged voluminous analogues of large K, Rb, T1(I), Cs cations. Together they perform related structural functions.
New Molecular Niobium(IV) Complexes NbX4(OPPh3)2 (X = Cl, Br): Synthesis, Crystal and Electronic Structure
Abstract
New molecular niobium(IV) complexes NbCl4(OPPh3)2(1) and NbBr4(OPPh3)2(2) are synthesized by heating respective niobium pentahalide with a mixture of triphenylphosphine and triphenylphosphine oxide. For the obtained compounds the crystal structure is solved: 1P-1, a = 13.3540(5) Å, b = 9.4461(3) Å, c = 9.5635(3) Å, α = 93.084(1)°, β = 121.263(1)°, γ = 115.058(1)°, Z = 1, R1 = 0.0194; 2P-1, a = 13.308(2) Å, b = 9.5934(8) Å, c = 9.5556(9) Å, α = 93.975(3),°, β = 119.391(4)°, γ = 114.740(4)°, Z = 1, R1 = 0.0184. The unpaired electron is mainly located on the niobium atom, which is supported by quantum chemical calculations and EPR spectroscopic results.
Synthesis and Characterization of a Cobalt Coordination Polymer with Bis(4-(1H-Imidazol-1-Yl)Phenyl)Methanone and 1,1′-Biphenyl-2,2′-Dicarboxylate
Abstract
A cobalt coordination polymer with the formula {[Co(bipmo)(bpa)]n · H2O}n(1) (bipmo = = bis(4-(1H-imidazol-1-yl)phenyl)methanone, H2bpa = 1,1′-biphenyl-2,2′-dicarboxylic acid) is synthesized and structurally characterized. The single crystal X-ray diffraction analysis shows that the coordination geometry of the Co(II) ion is a quite distorted octahedron. The Co1 atom is octahedrally coordinated by four O atoms from two bpa2− ligands, and two N atoms from two bipmo ligands. Interestingly, adjacent Co ions are linked by bpa2− bridges to generate an infinite one-dimensional coordination chain along the b axis, which are further connected by bipmo to generate two-dimension layers parallel to the (1 0 1) plane. The thermal stability of the complex are also investigated.
Structure of a One-Dimensional Copper(I) Polymer with Iodine Bridges
Abstract
A novel one-dimensional polymeric Cu(I) halide complex with iodine bridges between copper atoms and 2-phenylquinoline as an N-donor ligand is prepared. The complex is characterized by elemental analyses, IR spectroscopy, and crystallographic studies.The coordination geometry around copper may be described as distorted trigonal planar. The I-Cu-I, Cu-I-Cu, and N-Cu-I angles are 115.90(2)°, 116.37(2)°, and 124.80(8)°, respectively. The Cu-I distances range from 2.563(6) Å to 2.569(6) Å, and the Cu-N bond is 2.016(2) Å, being in good agreement with that in the related structures.
Synthesis, Characterization, and Crystal Structure Analysis of New Mixed Metal Sulfate NaPr(SO4)2(H2O)
Abstract
A crystalline mixed-metal sulfate compound NaPr(SO4)2(H2O) is synthesized under hydrothermal conditions and thoroughly characterized. Sodium bisulfite (NaHSO3) and piperazine are used with praseodymium acetate to obtain this sulfate-based structure. The single crystal structural analysis shows that the compound has the NaCe(SO4)2 · H2O structure type and crystallizes in the trigonal space group P3221 (No. 154) with a = 6.9872(2) Å, c = 12.8935(8) Å, and V = 545.14(4) Å3. The compound has three-dimensional connectivity formed by the sulfate units with Pr and Na centers. Tricapped trigonal prismatic PrO9 units and square-antiprismatic NaO8 units link to the SO4 tetrahedron for building the three-dimensional structure. The compound is also characterized by PXRD, TGA, and FT-IR spectroscopy. The present study illustrates the usefulness of the bisulfite anion and secondary amine for the chiral structure building.
Synthesis, Molecular and Crystal Structure of Ethyl 5-Cyano-2-(Dicyanomethyl)-2-Methyl-4-Oxo-6-Phenyl-3-Azabicyclo[3.1.0]Hexane-1-Carboxylate
Abstract
As a result of triple condensation of malonodinitrile with benzaldehyde and ethyl 2-chloro-3-oxobutanoate a compound with 3-azabicyclo[3.1.0]hexane framework is formed whose crystal structure is determined by X-ray crystallography. In the crystal structure a layered character of the molecular packing is found. Molecules are linked in the layer by H bonds of N-H…O=C and C-H…O=C types and also a large number of atom-atom contacts whose energy corresponds to potential wells.
Coordination Compounds of Lanthanides with Hydrazones of 3-Methyl-1-Phenyl-4-Formylpyrazole-5-One and 1,3,5-Benzenetricarboxylic acid
Abstract
We describe the results of the X-ray diffraction study of a dysprosium(III) complex with trihydrazone of 3-methyl-1-phenyl-4-formylpyrazole-5-one and 1,3,5-benzenetricarboxylic acid, as well as a heteroligand gadolinium(III) complex with tri- and dihydrazone of 3-methyl-1-phenyl-4-formylpyrazole-5-one and 1,3,5-benzenetricarboxylic acid (H3L and H3L1 respectively). It is determined that the homoligand complex of dysprosium has a M4L4 composition and a pseudotetrahedral structure in which metal ions occupy vertices of a trigonal pyramid and trinucleating ligands are located on its sides. The heteroligand gadolinium complex Gd3(L)(HL1)3 has a trigonal structure. Metal ions at the triangle vertices are linked by a trinucleating ligand located above the triangle plane, and three binucleating ligands link the central atoms in pairs. The geometry of dysprosium and gadolinium coordination polyhedra correspond to a three-capped trigonal prism.
Dihydrogenphosphate Anionic Template-Assisted Hydrogen Bonded Networks in 2-Benzylaminopyridinium and 4-Ethyoxyanilinium Dihydrogenphosphate Salts
Abstract
In the title compounds, namely 2-benzylaminopyridinium dihydrogenphosphate C12H13N2+·H2PO2−, (I) and 4-ethoxyanilinium dihydrogenphosphate C8H12NO+·H2PO4−, (II), the H2PO4− anions form a one-dimensional chain and a two-dimensional supramolecular sheet built through O-H⋯ O hydrogen bonds. The asymmetric unit of (II) consists of two symmetry-independent molecules with almost similar geometrical parameters, differing in the orientation of cations with respect to the anions. The 2-benzylaminopyridinium cations of I are linked to the anionic one-dimensional chain, while the 4-ethoxyanilinium cations of II are anchored to the anionic two-dimensional sheet through N-H⋯ O hydrogen bonds. These anion-cation interactions lead to the formation of an organic-inorganic supramolecular one-dimensional chain and two-dimensional sheets in I and II respectively. In dihydrogenphosphate salts the formation of anionic supramolecular motifs and networks are very much influenced by the nature of cations and their interaction with the H2PO4− anions.