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Volume 53, Nº 6 (2017)

Article

Specific features of chitosan depolymerization by chitinases, chitosanases, and nonspecific enzymes in the production of bioactive chitooligosaccharides (Review)

Aktuganov G., Melent’ev A.

Resumo

The data on features of the hydrolytic cleavage of chitosan by different groups of specific and nonspecific enzymes are summarized. Alternative approaches to the production of chitooligomers and their derivatives are also briefly considered.

Applied Biochemistry and Microbiology. 2017;53(6):611-627
pages 611-627 views

Oxylipins and oxylipin synthesis pathways in fungi

Bachurina G., Kharchenko E., Groza N., Belozerskaya T., Gessler N., Filippovich S.

Resumo

Oxylipins are a family of oxygenated fatty acids that are very diverse with regard to origin, structure, and functions. These compounds are found in almost all living beings and serve both as autoregulators of the development of organisms and as communication molecules. The autoregulatory role of oxylipins in fungi is to control the development, reproduction, synthesis of secondary metabolites (including mycotoxins), and adaptive responses. The role of oxylipins in the regulation of pathogenesis accounts for an important aspect of research on the biological activity of these compounds. The synthetic pathways and functions of oxylipins of fungi, the differences between fungal oxylipins and oxylipins from bacteria, higher plants, and mammals, and the role of oxylipins in the interaction of fungi with other organisms are considered in the present review.

Applied Biochemistry and Microbiology. 2017;53(6):628-639
pages 628-639 views

Cultivation of the microalga Neochloris oleoabundans for biofuels production and other industrial applications (a review)

Abu Hajar H., Riefler R., Stuart B.

Resumo

Microalgae cultivation for biofuels production and other applications has gained considerable interest recently. Despite their simple structures, microalgae can accumulate significant amounts of neutral lipids per dry cell weight compared to other energy crops. Neochloris oleoabundans is a promising microalga known for its high lipid content and biomass growth rate compared to other species cultivated for biofuels synthesis; therefore, it is considered as a suitable candidate for biodiesel synthesis. This review paper covers several key aspects associated with the cultivation and applications of the microalga N. oleoabundans. Biomass composition, factors affecting the growth, and biomass and lipid productivities of this species were addressed. In addition, different growth conditions as well as alternative readily available nutrient media to support the growth of N. oleoabundans were presented in this review.

Applied Biochemistry and Microbiology. 2017;53(6):640-653
pages 640-653 views

Feruloyl esterase from Alternaria tenuissima that hydrolyses lignocellulosic material to release hydroxycinnamic acids

Chi D., Giap V., Anh L., Nghi D.

Resumo

An extracellular feruloyl esterase from the culture filtrates of the isolated fungus Alternaria tenuissima was successfully purified to apparent homogeneity by anion-exchange and size-exclusion chromatography. Peptide fragments of purified enzyme (designated as AltFAE; molecular weight of 30.3 kDa determined by SDS-PAGE) were identified by mass spectrometry using a NanoLC-ESI-MS/MS system. Michaelis-Menten constants (KM) and catalytic efficiencies (kcat/KM) were determined for typical substrates of feruloyl esterase, and the lowest KM of 50.6 μM (i.e., the highest affinity) and the highest kcat/KM (3.1 × 105 s—1 M–1) were observed for methyl p-coumarate and methyl ferulate, respectively. Not least, AltFAE catalyzed conversion of lignocellulosic material (e.g. wood meal) to release hydroxycinnamic products, i.e. ferulic- and p-coumaric acids.

Applied Biochemistry and Microbiology. 2017;53(6):654-660
pages 654-660 views

Expression of the zebrafish β-defensin 3 mature peptide in Pichia pastoris and its purification and antibacterial activity

Tao Y., Song C., Li W.

Resumo

Defensins are abundant in cells and tissues that are involved in host defense against microbial infections. zfDB3 (zebrafish β-defensin 3) is one of 3 copies of defensin β-like genes from zebrafish (Danio rerio). Here we focus on mzfDB3, which is the gene encoding for the zebrafish β-defensin 3 mature peptide. A codon-optimized mzfDB3 gene with a 6×His-tag at the 3′-end was inserted into the pPICZαA expression vector and transformed into Pichia pastoris X-33 cells. The recombinant zebrafish β-defensin 3 mature peptide (rmzfDB3) was induced with 1.0% methanol at 29°C for 72 h and purified by immobilized metal affinity chromatography. MALDI-TOF/TOF analysis confirmed the expected purified product (rmzfDB3, 5.9 kDa). Fermentation supernatant, which contained rmzfDB3, showed antibacterial activity against Grampositive (i.e., Listeria monocytogenes, Staphylococcus aureus, and Bacillus cereus) and Gram-negative (i.e., Escherchia coli BL21, Vibrio parahaemolyticus, Salmonella lignieres, and Pseudomonas aeruginosa) bacteria.

Applied Biochemistry and Microbiology. 2017;53(6):661-668
pages 661-668 views

Rational design of enzyme compositions for the production of functional hydrolysates of cow milk whey proteins

Torkova A., Ryazantseva K., Agarkova E., Kruchinin A., Tsentalovich M., Fedorova T.

Resumo

The design of enzyme compositions for the preparation of functional hydrolysates of whey proteins is studied. Analysis of the protein profiles of the whey from hard, semihard, and soft cheeses showed that the whey contains 50–63% β-lactoglobulin, 19–20% α-lactalbumin, and up to 11% κ-casein. According to the protein profile, the whey from Circassian cheese contains 76% casein (α-, β-, and κ-casein), 12% β-lactoglobulin, and 12% α-lactalbumin. Based on the in silico analysis, the rational design of a multienzyme composition was carried out for the hydrolysis of whey with a known protein composition taking into account the content of amino acid descriptors of biological activity and bitter taste. For the hydrolysis of whey from hard (Montazio), soft (Mozzarella and Gorgonzola), and semihard (Caciotta) cheeses, the determined optimum ratio of the Protamex and Alcalase enzymes was 3.0: 1.0% (90 min, 50°С). For soft pickled unripened cheese (Circassian), the optimum ratio of the Thermolysin and Alcalase enzymes was 2.0: 1.0% (60°С, 120 min). The use of the bioinformatics approach made it possible to obtain hydrolysates with acceptable organoleptic properties and predetermined antioxidant (400–500 μM TE/g protein) and antihypertensive (IC50 537–2500 mg protein/L) activities.

Applied Biochemistry and Microbiology. 2017;53(6):669-679
pages 669-679 views

Plant protein hydrolysates as fish fry feed in aquaculture. Hydrolysis of rapeseed proteins by an enzyme complex from king crab hepatopancreas

Muranova T., Zinchenko D., Kononova S., Belova N., Miroshnikov A.

Resumo

Rapeseed proteins were processed by an enzyme complex isolated from king crab hepatopancreas in order to obtain a hydrolysate for use as fish fry feed. The amino acid composition of the obtained protein preparation was close to the amino acid composition of fishmeal traditionally used in the production of fish feed. SDS-PAGE, HPLC, and mass spectrometric analysis of the products of enzymatic hydrolysis of rapeseed proteins showed that the proteins were hydrolyzed to a high degree. The composition of the hydrolysates depended on the hydrolysis time and included free amino acids (27% of the total weight of the protein mix after 3 h of hydrolysis and 56% after 21 h of hydrolysis), short peptides (2 to 20 amino acid residues), and small amounts of protein fragments with a molecular weight of approximately 14 kDa, as shown by by SDS-PAG electrophoresis.

Applied Biochemistry and Microbiology. 2017;53(6):680-687
pages 680-687 views

Creation of thermostable polypeptide cassettes for amino acid balancing in farm animal rations

Grishin D., Gladilina Y., Aleksandrova S., Pokrovskaya M., Podobed O., Pokrovskii V., Zhdanov D., Sokolov N.

Resumo

The study of the poultry needs in basic nutrients allowed the development of a scheme for obtaining feed polypeptides (“polypeptide cassettes”) enriched with L-amino acids, which are necessary for the metabolism of birds. The amino acid and nucleotide profiles of about 500 bioinformation sequences of thermostable plant proteins and archaea were studied, on the basis of which candidate sequences were selected. In silico, the amino acid and domain composition of the thermostable polypeptides has been optimized. A library of genetically engineered constructs encoding optimized polypeptides with the necessary composition of L-amino acids irreplaceable for poultry has been created. Primary E. coli producer strains were obtained, and the expression and thermostability of the target polypeptides were studied.

Applied Biochemistry and Microbiology. 2017;53(6):688-698
pages 688-698 views

Activity of Na+/K+-ATPase and the content of phospholipids in the blue mussel Mytilus edulis L. during environmental temperature changes

Nemova N., Kaivarainen E., Fokina N.

Resumo

Changes in the activity of Na+/K+-ATPase and content of membrane lipids (phospholipids) in the gills and hepatopancreas of the blue mussel Mytilus edulis L. have been studied during a sharp temperature increase under aquarian managed conditions. The most pronounced changes were recorded in mollusk gills. A correlation of changes in the activity of membrane-bound Na+/K+-ATPase and phospholipid content (mainly phosphatidylserine, phosphatidylinositol, phosphatidylethanolamine, and lysophosphatidylcholine) was revealed; this correlation evidences their mutual involvement in compensation for the temperature effect to help mussels adapt to sharp temperature changes.

Applied Biochemistry and Microbiology. 2017;53(6):699-702
pages 699-702 views

Antimicrobial potential of alkalophilic micromycetes Emericellopsis alkalina

Baranova A., Georgieva M., Bilanenko E., Andreev Y., Rogozhin E., Sadykova V.

Resumo

The ability of alkalophilic micromycetes of the Emericellopsis alkalinа to produce antimicrobial peptides has been studied. Evaluation of the spectrum and the yield of antibiotic compounds has allowed us to choose a promising producer of peptide antimycotics, Emericellopsis аlkalinа А118. The producer exhibits antifungal activity against conditionally pathogenic yeast and mold fungi, i.e., Candida аlbicans, Aspergillus niger, and A. fumigatus. The group of homologous active compounds isolated by the set of identified structural features (molecular weight, the ratio of the absorption at certain wavelengths, and the absence of initiation of Edman sequencing) may be attributed to peptaibols, which are a group of nonribosomal membrane-active antimicrobial peptides with a specificity of action primarily against fungi-micromycetes.

Applied Biochemistry and Microbiology. 2017;53(6):703-710
pages 703-710 views

Effect of potassium sorbate, sodium benzoate, and sodium nitrite on biosynthesis of cyclopiazonic and mycophenolic acids and citrinin by fungi of the Penicillium genus

Zhelifonova V., Antipova T., Kozlovskii A.

Resumo

The effect of potassium sorbate, sodium benzoate, and sodium nitrite used as preservatives in the food industry in the production of such mytotoxins as citrinin cyclopiazonic and mycophenolic acids by the contaminating fungi Penicillium citrinum, P. commune, and P. brevicompactum, respectively, was investigated. It was shown that the effect of preservatives used at concentrations relevant to the food industry on the synthesis of mycotoxins depended on the species-specific biochemical and physiological features of the cultures. The growth of P. brevicompactum was inhibited to the highest degree by sodium nitrite and potassium sorbate, and the growth of P. commune was so inhibited by sodium benzoate. It was established that the introduction of 0.015% sodium nitrite into the medium resulted in 1.3- and 1.4-fold reductions of the production of citrinin and mycophenolic acid, respectively, while the production of cyclopiazonic acid did not change in comparison with the control. The introduction of 0.015% sodium benzoate caused a more than 1.5-fold increase of the concentration of citrinin, cyclopiazonic, and mycophenolic acids, and the addition of 0.02% potassium sorbate increased the production of cyclopiazonic and mycophenolic acids by 1.7 and 2.6 times, respectively.

Applied Biochemistry and Microbiology. 2017;53(6):711-714
pages 711-714 views

Chemical leaching of copper-zinc concentrate with ferric iron biosolution

Fomchenko N., Muravyov M.

Resumo

The process of leaching of copper-zinc concentrate with a solution containing biogenic iron, which is a product of the metabolism of iron-oxidizing microorganisms, was studied. The dependence of leaching rate of metals on temperature and pH was determined. It was shown that up to 98% of zinc and 70% of iron could be removed from the concentrate, while up to 7 and 4 g/L of zinc and copper, respectively, were accumulated in the liquid phase, which was sufficient for metal recovery. It was established that a copper concentrate with copper content up to 16% and only 0.5% of zinc could be obtained after chemical leaching for 340 min at 80°C.

Applied Biochemistry and Microbiology. 2017;53(6):715-718
pages 715-718 views

Hydrogen peroxide-induced salt tolerance in the Arabidopsis salicylate-deficient transformants NahG

Yastreb T., Kolupaev Y., Lugovaya A., Dmitriev A.

Resumo

The effect of hydrogen peroxide treatment on the salt tolerance of wild-type Arabidopsis thaliana L. plants (Col-0) and plants transformed with the bacterial salicylate hydroxylase gene (NahG) was studied. The base tolerance to salt stress caused by 200 mM of NaCl in solution culture was higher in plants with the NahG genotype in comparison with the wild-type plants. Growth inhibition was observed for wild-type plants under the action of exogenous hydrogen peroxide, which was not observed for the NahG transformants; salt tolerance increased in the both types of plants after treatment, which was assessed based on the growth indicators and the ability to preserve the chlorophyll pool following NaCl treatment. The content of endogenous Н2О2 in the leaves of wild-type plants increased significantly following exogenous hydrogen peroxide treatment and salt stress, while it practically did not change in the leaves of the NahG genotype. The SOD activity increased in both genotypes after treatment with exogenous hydrogen peroxide, and remained at an elevated level after salt stress in comparison with the nontreated plants. Furthermore, the catalase activity increased in leaves of the salicylate-deficient genotype but not in the Col-0 genotype. The guaiacol peroxidase activity increased in plants of both genotypes under the action of hydrogen peroxide and salt stress, with the NahG plants demonstrating a higher degree of increase. The Н2О2 treatment facilitated the increase of the proline content in leaves of the plants of both genotypes under conditions of salt stress. It was concluded that there were hydrogen peroxide signal transduction pathways in Arabidopsis plants that were salicylic acid independent and that the antioxidant system functioned more effectively in salicylate-deficient Arabidopsis plants.

Applied Biochemistry and Microbiology. 2017;53(6):719-724
pages 719-724 views

Biosensor for the detection of bacteriophages based on a super-high-frequency resonator

Guliy O., Zaitsev B., Smirnov A., Karavaeva O., Borodina I.

Resumo

Azospirillum lipoferum Sp59b microbial cells were immobilized on the surface of thin polystyrene films modified in plasma from a high-frequency discharge of argon (13.56 MHz). The optimal conditions for immobilization, under which cell activity was maintained with respect to specific bacteriophages, were established. It was shown that it is possible to record the interaction of immobilized microbial cells and bacteriophages with a microwave-based resonant system (5–8.5 GHz). It was found that the biosensor made it possible to distinguish the interaction of bacterial cells with specific bacteriophages from the control, in which such interaction was absent. With the obtained super-high-frequency sensor, it was possible to determine the content of ΦAl-Sp59b bacteriophages in a suspension containing ~106 phages/mL. The analysis time was about 10 min. The viability of microbial cells after immobilization was also determined with this sensor. The results obtained with the use of the sensor on the basis of a super-high-frequency resonator have shown that it is promising for the development of methods to determine viral particles and the viability of microbial cells.

Applied Biochemistry and Microbiology. 2017;53(6):725-732
pages 725-732 views