


Vol 53, No 4 (2017)
- Year: 2017
- Articles: 13
- URL: https://journals.rcsi.science/0003-6838/issue/view/9104
Article



Prokaryotic cytochromes P450 (Review)
Abstract
The research on the structure and role of bacterial cytochromes P450 are summarized in this review. We consider the organizational features of these enzymes, cytochrome-catalyzed reactions, the distribution of cytochromes among prokaryotes, and their functions in bacterial cells. We cite the data on cytochrome genes and the regulation of their expression in prokaryotes and classify cytochromes by components involved in the electronic transition. We consider the role of bacterial cytochromes in the biodegradation of carbohydrates and xenobiotics by microorganisms and the possible involvement of reactive oxygen species, which are generated in the catalytic cycle of these enzymes, at the initial stages of carbohydrate biodegradation.



Synthesis, structural characterization, and biological properties of pentyl- and isopentyl-α-D-glucosides
Abstract
The study was devoted to the synthesis of pentyl glucosides (PenGn) and isopentyl glucosides (Iso-PenGn) by transglycosylation using recombinant cyclodextrin glycosyltransferase from Bacillus circulans A11, β-cyclodextrin as a glucosyl donor and 1-pentanol and isopentanol as acceptors. TLC and MS analysis indicated at least 3 products which were in accordance with PenGn and IsoPenGn having glucose, maltose and maltotriose attached to the alkyl groups of both alcohols. Two products of each glucoside were purified by preparative TLC and their structures were identified by NMR technique to be pentyl-α-D-glucopyranoside (PenG1), pentyl-α-D-maltopyranoside (PenG2), isopentyl-α-D-glucopyranoside (IsoPenG1) and isopentyl- α-D-maltopyranoside (IsoPenG2). The effect of water-in-hexadecane emulsion on emulsion-forming properties showed that PenG2 had the highest emulsifying activity. Adding PenG2 to the insoluble Corynebacterium glutamicum amylomaltase from Escherichia coli transformants (A406R), helped to perform it to more soluble conformation. Moreover, it was found that PenG1,2 exhibited a higher antibacterial activity against E. coli ATCC 25922 than that of IsoPenG1,2. Hence, the biological properties of the synthesized products may be useful for their applications as emulsifying, solubilizing and antibacterial agents.



Overexpression of functional human FLT3 ligand in Pichia pastoris
Abstract
Growth factors and cytokines including FLT3 Ligand (FLT3L) have many applications in cellular and molecular biology studies, and also as therapeutical agents. FLT3L was expressed in Pichia pastoris through cloning from human leukemic K562 cell line as well as using a codon-optimized synthetic construct. Codon adaptation index (CAI) was increased from 55 in the native sequence up to 95 after optimization. Significant changes occurred in the codons for Pro, Arg, Leu and Ser toward the favored codons in P. pastoris. Both forms of expressed FLT3L (from the native and optimized sequences) were capable of stimulating proliferation of the FDC-P1 cells expressing human wild-type FLT3 (FD–FLT3–WT). Sequence optimization resulted in 55-fold increase in the yield of active FLT3L (290 μg/mL of product in the crude supernatant). Amino acid residues 27–162 are sufficient for the biological function of human FLT3L. Pichia pastoris is a highly efficient and cost-effective system for expression of endotoxin-free FLT3L; however, codon optimization is necessary for its optimal expression.



Properties of extracellular plasmin-like proteases of Aspergillus ochraceus micromycete
Abstract
The properties of two extracellular proteases of Aspergillus ochraceus VKM F-4104D micromycete with plasmin-like activity have been studied. It has been shown that the enzymes differ in pI (5.05 and 6.83) and have similar molecular weights (about 32 and 35 kDa), pH optima (pH 9.0–10.00 at 45°C), and specificities of action on a limited set of chromogenic peptide substrates of trypsin-like proteases. According to inhibitory analysis, both enzymes belong to the serine proteases. Their properties appeared to be similar to those of the protease, protein C activator, which is the main proteolytic enzyme of A. ochraceus VKM F-4104D. Most likely, proteases of this micromyсetes are isoenzymes.



A consortium of immobilized rhodococci for oilfield wastewater treatment in a column bioreactor
Abstract
The possible use of a consortium of actinobacteria from the genus Rhodococcus immobilized on a polymeric carrier has been investigated for oilfield wastewater treatment in a bioreactor. It has been found that Rhodococcus opacus IEGM 263 and Rhodococcus ruber IEGM 231 cells remain viable at high concentrations of mineral salts in water and are able to oxidize oil hydrocarbons up to 62–81%. It has been shown that the consortium of rhodococci was more efficient in the elimination of hydrocarbons from wastewater than monocultures.



Microfungal strains—potential lipid producers for biodiesel
Abstract
The application potential of microfungal strains (Cadophora malorum, Mucor circinelloides, Trichoderma viride, nonsporulating culture Mycelia sterilia) as promising lipid producers is investigated. The C. malorum strain is found to be optimal for oil sludge recycling into biofuel. Its palmitic acid content is 52.9%, and it ensures a cetane number of the obtained biodiesel. The ability of the C. malorum strain to degrade n-alkanes and polyaromatic hydrocarbons allows the effective bioremediation of oil sludge to be performed.



The effects of bioleaching conditions on the nonferrous metals content in copper-zinc concentrate
Abstract
The effects of pH and ferrous iron concentration in cultural medium on the bioleaching of copper-zinc concentrate by mesophilic and moderately thermophilic acidophilic microorganisms were studied. It was revealed that the optimum pH for bioleaching in presence of 5 g/L of ferrous iron was 1.4–1.5. It was shown that bioleaching under optimal conditions led to an increase in the copper content in solid phase from 10.1 to 14% and a decrease in the zinc content from 7.4 to 1.4%. The results of the present work demonstrate that acidophilic microorganisms can be used for treatment of complex sulfide concentrates containing copper and zinc.



Usage of strain-producers of adhesin RapA1 from Rhizobium leguminosarum for the creation of binary biofertilizers
Abstract
Binary biofertilizers consisting of a rhizobial strain specific to the plant Rhizobium leguminosarum and a strain-producer of the RapA1 adhesin protein, which enhances the adhesion of rhizobacteria to the plant roots, have been designed. A system consisting of highly productive bacteria strains and additional strains that enhance the action of the main component have been obtained.



Dehydrogenase and electrochemical activity of Escherichia coli extracts
Abstract
The dehydrogenase activity of Escherichia coli BB cell extracts was studied at different growth stages in the presence of different substrates and triphenyl tetrazolium chloride as an electron acceptor. It was shown that the highest degree of reduction of triphenyl tetrazolium chloride was observed during exponential growth of the bacteria when potassium isocitrate was used as a substrate. It was found that extracts of the bacteria during the exponential phase of growth on an inert glassy carbon electrode in a three-electrode liquid electrochemical cell manifested electrochemical activity in the presence of potassium citrate and methylene blue or potassium hexacyanoferrate(III) as redox mediators.



Analysis of interaction of bacterial cells and bacteriophages in conducting suspensions with an acoustic sensor
Abstract
The possibility of analyzing bacterial cells infected by a specific bacteriophage, using Escherichia coli as an example, with an acoustic sensor directly in suspensions with different initial electrical conductivities was studied. The analysis was based on measurement of the time dependence of phase and the complete loss of output sensor signals of fixed frequency before and after biological interaction of microbial cells and bacteriophages. The aforementioned sensor makes it possible to detect bacterial cells and assess their viability in conducting suspensions. It was shown that the conductivity of the buffer solution should not exceed 10 μS/cm and the minimum detectable concentration of microbial cells was ~104 cells/mL.



Application of magnetite nanoparticles for the development of highly sensitive immunochromatographic test systems for mycotoxin detection
Abstract
Highly sensitive immunochromatographic test systems were developed for the detection of zearalenone (ZEA) and T-2 toxin (T2T) using magnetite nanoparticles (MNPs) for the labeling. In order to detect an analyte with high sensitivity, the competitive reaction was performed with free specific antibodies, while immune complexes were detected by the reaction with label-conjugated anti-species antibodies. The conditions for the synthesis of magnetite nanoparticles conjugated to anti-species antibodies were optimized. The concentrations of specific reagents that provided the highly sensitive detection of T-2 toxin and zearalenone were found. The instrumental detection limit for the determination of T-2 toxin and zearalenone in baby food samples (oat flakes) was 0.1 and 0.05 ng/mL (2.0 and 1.0 ng/g), respectively. The assay time was 15 min. The results of the present study confirm the possibility of the practical use of magnetite nanoparticles for immunochromatographic assay labeling.



Polyelectrolyte-based enzymatic diagnosticum with precipitation detection system for urea assay in solution
Abstract
A polyelectrolyte-based enzymatic diagnosticum with a precipitation detection system that can be used as a biosensor was created. The detection method was based on the change in polyelectrolyte microcapsule weight with respect to the urea content. The possibility of biosensor reutilization was demonstrated. The appropriate ionic precipitator causing precipitation of insoluble carbonate within the microcapsules and the optimal microcapsule titre were found. In the solution of monovalent anions (chlorides), the activity of encapsulated urease was shown to increase monotonically as the square root of the ionic strength depending on the elevation of the salt content. The activity drastically increased in a narrow concentration interval (0.6–0.8 mM) of divalent anions (sulfates) and reached the level of the native enzyme activity.


